%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  PLmixed
%global packver   0.1.7
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.7
Release:          1%{?dist}%{?buildtag}
Summary:          Estimate (Generalized) Linear Mixed Models with Factor Structures

License:          GPL (>= 2)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 3.2.2
Requires:         R-core >= 3.2.2
BuildArch:        noarch
BuildRequires:    R-CRAN-Matrix >= 1.1.1
BuildRequires:    R-CRAN-lme4 
BuildRequires:    R-CRAN-numDeriv 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-optimx 
Requires:         R-CRAN-Matrix >= 1.1.1
Requires:         R-CRAN-lme4 
Requires:         R-CRAN-numDeriv 
Requires:         R-stats 
Requires:         R-CRAN-optimx 

%description
Utilizes the 'lme4' and 'optimx' packages (previously the optim() function
from 'stats') to estimate (generalized) linear mixed models (GLMM) with
factor structures using a profile likelihood approach, as outlined in Jeon
and Rabe-Hesketh (2012) <doi:10.3102/1076998611417628> and Rockwood and
Jeon (2019) <doi:10.1080/00273171.2018.1516541>. Factor analysis and item
response models can be extended to allow for an arbitrary number of nested
and crossed random effects, making it useful for multilevel and
cross-classified models.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}