%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  bidsr
%global packver   0.1.0
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.0
Release:          1%{?dist}%{?buildtag}
Summary:          A Brain Imaging Data Structure ('BIDS') Parser

License:          MIT + file LICENSE
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-S7 >= 0.2.0
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-CRAN-data.table 
BuildRequires:    R-CRAN-fastmap 
BuildRequires:    R-CRAN-fs 
BuildRequires:    R-CRAN-jsonlite 
BuildRequires:    R-CRAN-nanotime 
BuildRequires:    R-utils 
BuildRequires:    R-CRAN-uuid 
Requires:         R-CRAN-S7 >= 0.2.0
Requires:         R-CRAN-checkmate 
Requires:         R-CRAN-data.table 
Requires:         R-CRAN-fastmap 
Requires:         R-CRAN-fs 
Requires:         R-CRAN-jsonlite 
Requires:         R-CRAN-nanotime 
Requires:         R-utils 
Requires:         R-CRAN-uuid 

%description
Parse and read the files that comply with the brain imaging data
structure, or 'BIDS' format, see the publication from Gorgolewski, K.,
Auer, T., Calhoun, V. et al. (2016) <doi:10.1038/sdata.2016.44>. Provides
query functions to extract and check the 'BIDS' entity information (such
as subject, session, task, etc.) from the file paths and suffixes
according to the specification. The package is developed and used in the
reproducible analysis and visualization of intracranial
electroencephalography, or 'RAVE', see Magnotti, J. F., Wang, Z., and
Beauchamp, M. S. (2020) <doi:10.1016/j.neuroimage.2020.117341>; see
'citation("bidsr")' for details and attributions.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}