GOthresh {GoMiner} | R Documentation |
GOthresh
Description
retrieve lines of m that meet both enrichThresh and countThresh
Usage
GOthresh(m, sampleFDR, enrichThresh, countThresh, fdrThresh)
Arguments
m |
return value of GOenrich3() |
sampleFDR |
component of return value of RCPD() |
enrichThresh |
numerical acceptance threshold for enrichment |
countThresh |
numerical acceptance threshold for gene count |
fdrThresh |
numerical acceptance threshold for fdr |
Value
returns a subset of matrix (m joined with fdr$sampleFDR) with entries meeting all thresholds
Examples
#load("data/x_m.RData")
#load("data/x_fdr.RData")
thresh<-GOthresh(x_m,x_fdr$sampleFDR,enrichThresh=2,countThresh=2,fdrThresh=0.100)
[Package GoMiner version 1.0 Index]