GOheatmap {GoMiner} | R Documentation |
GOheatmap
Description
generate a matrix to be used as input to a heat map
Usage
GOheatmap(sampleList, x, thresh, fdrThresh = 0.105)
Arguments
sampleList |
character list of gene names |
x |
DB component of return value of GOtable3() |
thresh |
output of GOthresh() |
fdrThresh |
numeric value of FDR acceptance threshold |
Value
returns a matrix to be used as input to a heat map
Examples
## Not run:
# GOGOA3.RData is too large to include in the R package
# you can generate it using the package 'minimalistGODB'
# or you can retrieve it from https://github.com/barryzee/GO
#load("~/GODB_RDATA/GOGOA3.RData")
ONT<-"biological_process"
DB<-GOGOA3$ontologies[[ONT]]
#load("data/cluster52.RData")
sampleList<-cluster52
#load("data/x_thresh.RData")
heatmap<-GOheatmap(sampleList,DB,x_thresh)
## End(Not run)
[Package GoMiner version 1.0 Index]