extractCoverageFromVcf {DEploid.utils}R Documentation

Extract VCF information

Description

Extract VCF information

Usage

extractCoverageFromVcf(filename, samplename)

Arguments

filename

VCF file name.

samplename

Sample name

Value

A dataframe list with members of haplotypes, proportions and log likelihood of the MCMC chain.

See Also

Examples

vcfFile = system.file("extdata", "PG0390-C.test.vcf.gz", package = "DEploid.utils")
vcf = extractCoverageFromVcf(vcfFile, "PG0390-C")


[Package DEploid.utils version 0.0.1 Index]