%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  matchedcc
%global packver   0.1.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.1.1
Release:          1%{?dist}%{?buildtag}
Summary:          'Stata'-Like Matched Case-Control Analysis

License:          GPL (>= 3)
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel >= 4.1.0
Requires:         R-core >= 4.1.0
BuildArch:        noarch
BuildRequires:    R-CRAN-checkmate 
BuildRequires:    R-stats 
BuildRequires:    R-CRAN-cli 
BuildRequires:    R-CRAN-binom 
Requires:         R-CRAN-checkmate 
Requires:         R-stats 
Requires:         R-CRAN-cli 
Requires:         R-CRAN-binom 

%description
Calculate multiple statistics with confidence intervals for matched
case-control data including risk difference, risk ratio, relative
difference, and the odds ratio. Results are equivalent to those from
'Stata', and you can choose how to format your input data. Methods used
are those described on page 56 the 'Stata' documentation for "Epitab -
Tables for Epidemologists" <https://www.stata.com/manuals/repitab.pdf>.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}