phenoRegressor.rrBLUP.SNP {GROAN}R Documentation

SNP-BLUP using rrBLUP library

Description

Implementation of SNP-BLUP using rrBLUP library. Not to be exported.

Usage

phenoRegressor.rrBLUP.SNP(phenotypes, genotypes, extraCovariates = NULL, ...)

Arguments

phenotypes

phenotypes, a numeric array (n x 1), missing values are predicted

genotypes

SNP genotypes, one row per phenotype (n), one column per marker (m), values in 0/1/2 for diploids or 0/1/2/...ploidy for polyploids. Can be NULL if covariances is present.

extraCovariates

optional extra covariates set, one row per phenotype (n), one column per covariate (w). If NULL no extra covariates are considered.

...

extra parameters are passed to rrBLUP::mixed.solve

Value

The function returns a list with the following fields:


[Package GROAN version 1.3.1 Index]