%global __brp_check_rpaths %{nil}
%global __requires_exclude ^libmpi
%global packname  geeM
%global packver   0.10.1
%global rlibdir   /usr/local/lib/R/library

Name:             R-CRAN-%{packname}
Version:          0.10.1
Release:          1%{?dist}%{?buildtag}
Summary:          Solve Generalized Estimating Equations

License:          GPL-3
URL:              https://cran.r-project.org/package=%{packname}
Source0:          %{url}&version=%{packver}#/%{packname}_%{packver}.tar.gz


BuildRequires:    R-devel
Requires:         R-core
BuildArch:        noarch
BuildRequires:    R-CRAN-Matrix 
BuildRequires:    R-stats 
BuildRequires:    R-methods 
Requires:         R-CRAN-Matrix 
Requires:         R-stats 
Requires:         R-methods 

%description
GEE estimation of the parameters in mean structures with possible
correlation between the outcomes. User-specified mean link and variance
functions are allowed, along with observation weighting. The 'M' in the
name 'geeM' is meant to emphasize the use of the Matrix package, which
allows for an implementation based fully in R.

%prep
%setup -q -c -n %{packname}

# fix end of executable files
find -type f -executable -exec grep -Iq . {} \; -exec sed -i -e '$a\' {} \;
# prevent binary stripping
[ -d %{packname}/src ] && find %{packname}/src -type f -exec \
  sed -i 's@/usr/bin/strip@/usr/bin/true@g' {} \; || true
[ -d %{packname}/src ] && find %{packname}/src/Make* -type f -exec \
  sed -i 's@-g0@@g' {} \; || true
# don't allow local prefix in executable scripts
find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' {} \;

%build

%install

mkdir -p %{buildroot}%{rlibdir}
%{_bindir}/R CMD INSTALL -l %{buildroot}%{rlibdir} %{packname}
test -d %{packname}/src && (cd %{packname}/src; rm -f *.o *.so)
rm -f %{buildroot}%{rlibdir}/R.css
# remove buildroot from installed files
find %{buildroot}%{rlibdir} -type f -exec sed -i "s@%{buildroot}@@g" {} \;

%files
%{rlibdir}/%{packname}