Interface for 'pyDarwin' Machine Learning Pharmacometric Model Development


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Documentation for package ‘Certara.RDarwin’ version 1.1.1

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add_Covariate Add Covariate into PML models
add_CustomSpace Add a Custom Space
add_StParm Add Structural parameter into PML models Dosepoints
Covariate Create a new Covariate object and validate it
create_CustomSpace Create a Custom Space
create_ModelEmax Get the list of objects describing the PML models by set of Emax parameters
create_ModelPD Get the list of objects describing the PML models by set of PD parameters
create_ModelPK Get the list of objects describing the PML models by set of PK parameters
create_pyDarwinOptions Create pyDarwin Options
Dosepoint Create a new Dosepoint object and validate it
get_ModelTermsToMap Get Model Terms to Map
get_PMLParametersSets Get the list of objects describing the PML models by set of PK parameters
InitialEstimate Create an object of class InitialEstimate
list_Covariates List Covariates in the currrent PML set
list_Dosepoints List Dosepoints in the current PML set
list_Observations List Observations in the current PML set
list_Omegas List Unique Omega Names
list_StParms List Structural Parameters in the currrent PML set
list_Thetas List Unique Theta Names
modify_Dosepoint Modify Dosepoint in PML models
modify_Observation Modify Observation class in PML models
modify_Omega Modify Omega Parameters in PML Models
modify_StParm Modify structural parameter in PML models set
modify_StParmCustom Modify custom structural parameter in PML spaces
modify_Theta Modify Theta Parameters in PML Models
Observation Create an instance of Observation class.
ObservationCustom Create an instance of custom Observation class.
Omega Create an Omega instance with validation
output.CustomSpace Output a Custom Space
pyDarwinOptionsGA Create options for the Genetic Algorithm (GA) in pyDarwin.
pyDarwinOptionsGridAdapter Grid Adapter Options for pyDarwin
pyDarwinOptionsPenalty Create pyDarwin Penalty Options
pyDarwinOptionsPostprocess Create pyDarwin Postprocess Options
pyDarwinOptionsPSO Create options for the Particle Swarm Optimization (PSO) in pyDarwin.
remove_Covariate Remove Covariate from PML models
remove_Observation Remove Observation from PML models
remove_StParm Remove structural parameter from PML models
run_pyDarwin Run pyDarwin Model Search
Sigmas Create an instance of Sigmas class.
specify_EngineParams Specify engine parameters for model execution
specify_SimParams Specify engine parameters for model simulation
stop_pyDarwin Stop pyDarwin Model Search
StParm Create an instance of a Structural parameter.
Table Class initializer for NLME tables
Theta Create a new Theta instance with validation.
write_ModelTemplateTokens Prints NLME metamodel template file and token json file using given options, filepaths and data
write_pyDarwinOptions Write pyDarwin options to a JSON file.