Warning: Permanently added '54.210.246.65' (ED25519) to the list of known hosts. Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-4teza_9q/R-CRAN-BayesXsrc/R-CRAN-BayesXsrc.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-4teza_9q/R-CRAN-BayesXsrc --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1745099881.109336 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 6.1 starting (python version = 3.13.0, NVR = mock-6.1-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-4teza_9q/R-CRAN-BayesXsrc/R-CRAN-BayesXsrc.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-4teza_9q/R-CRAN-BayesXsrc --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1745099881.109336 -r /var/lib/copr-rpmbuild/results/configs/child.cfg Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-4teza_9q/R-CRAN-BayesXsrc/R-CRAN-BayesXsrc.spec) Config(fedora-42-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.1 INFO: Mock Version: 6.1 Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-42-x86_64-1745099881.109336/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (fallback) INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.23.0-1.fc41.noarch python3-dnf-plugins-core-4.10.1-1.fc41.noarch dnf5-5.2.12.0-2.fc41.x86_64 dnf5-plugins-5.2.12.0-2.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 114.1 KiB/s | 30.1 KiB | 00m00s fedora 100% | 359.2 KiB/s | 28.0 KiB | 00m00s Copr repository 100% | 102.6 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 177.6 MiB/s | 13.1 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.37-1.fc42 fedora 8.2 MiB bzip2 x86_64 1.0.8-20.fc42 fedora 99.3 KiB coreutils x86_64 9.6-2.fc42 fedora 5.5 MiB cpio x86_64 2.15-4.fc42 fedora 1.1 MiB diffutils x86_64 3.12-1.fc42 updates 1.6 MiB fedora-release-common noarch 42-26 updates 20.2 KiB findutils x86_64 1:4.10.0-5.fc42 fedora 1.9 MiB gawk x86_64 5.3.1-1.fc42 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.41-3.fc42 updates 0.0 B grep x86_64 3.11-10.fc42 fedora 1.0 MiB gzip x86_64 1.13-3.fc42 fedora 392.9 KiB info x86_64 7.2-3.fc42 fedora 357.9 KiB patch x86_64 2.8-1.fc42 updates 222.8 KiB redhat-rpm-config noarch 342-4.fc42 updates 185.5 KiB rpm-build x86_64 4.20.1-1.fc42 fedora 168.7 KiB sed x86_64 4.9-4.fc42 fedora 857.3 KiB shadow-utils x86_64 2:4.17.4-1.fc42 fedora 4.0 MiB tar x86_64 2:1.35-5.fc42 fedora 3.0 MiB unzip x86_64 6.0-66.fc42 fedora 390.3 KiB util-linux x86_64 2.40.4-7.fc42 fedora 3.4 MiB which x86_64 2.23-1.fc42 fedora 83.4 KiB xz x86_64 1:5.6.3-3.fc42 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.6.0-1.fc42 fedora 2.5 MiB alternatives x86_64 1.32-1.fc42 fedora 62.2 KiB ansible-srpm-macros noarch 1-17.1.fc42 fedora 35.7 KiB audit-libs x86_64 4.0.3-2.fc42 fedora 351.3 KiB basesystem noarch 11-22.fc42 fedora 0.0 B binutils x86_64 2.44-3.fc42 fedora 25.9 MiB build-reproducibility-srpm-macros noarch 0.6.0-1.fc42 fedora 735.0 B bzip2-libs x86_64 1.0.8-20.fc42 fedora 84.6 KiB ca-certificates noarch 2024.2.69_v8.0.401-6.fc42 updates 2.6 MiB coreutils-common x86_64 9.6-2.fc42 fedora 11.1 MiB crypto-policies noarch 20250214-1.gitff7551b.fc42 fedora 137.2 KiB curl x86_64 8.11.1-4.fc42 fedora 450.6 KiB cyrus-sasl-lib x86_64 2.1.28-30.fc42 fedora 2.3 MiB debugedit x86_64 5.1-5.fc42 fedora 192.7 KiB dwz x86_64 0.15-9.fc42 fedora 291.0 KiB ed x86_64 1.21-2.fc42 fedora 146.5 KiB efi-srpm-macros noarch 6-2.fc42 fedora 40.1 KiB elfutils x86_64 0.192-9.fc42 fedora 2.6 MiB elfutils-debuginfod-client x86_64 0.192-9.fc42 fedora 79.9 KiB elfutils-default-yama-scope noarch 0.192-9.fc42 fedora 1.8 KiB elfutils-libelf x86_64 0.192-9.fc42 fedora 1.2 MiB elfutils-libs x86_64 0.192-9.fc42 fedora 667.0 KiB fedora-gpg-keys noarch 42-1 fedora 128.2 KiB fedora-release noarch 42-26 updates 0.0 B fedora-release-identity-basic noarch 42-26 updates 674.0 B fedora-repos noarch 42-1 fedora 4.9 KiB file x86_64 5.46-1.fc42 fedora 100.2 KiB file-libs x86_64 5.46-1.fc42 fedora 11.9 MiB filesystem x86_64 3.18-36.fc42 fedora 112.0 B filesystem-srpm-macros noarch 3.18-36.fc42 fedora 38.2 KiB fonts-srpm-macros noarch 1:2.0.5-21.fc42 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-2.fc42 fedora 38.9 KiB fpc-srpm-macros noarch 1.3-14.fc42 fedora 144.0 B gdb-minimal x86_64 16.2-3.fc42 fedora 13.2 MiB gdbm-libs x86_64 1:1.23-9.fc42 fedora 129.9 KiB ghc-srpm-macros noarch 1.9.2-2.fc42 fedora 779.0 B glibc x86_64 2.41-3.fc42 updates 6.6 MiB glibc-common x86_64 2.41-3.fc42 updates 1.0 MiB glibc-gconv-extra x86_64 2.41-3.fc42 updates 7.2 MiB gmp x86_64 1:6.3.0-4.fc42 fedora 811.3 KiB gnat-srpm-macros noarch 6-7.fc42 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-6.fc42 fedora 60.8 KiB jansson x86_64 2.14-2.fc42 fedora 93.1 KiB json-c x86_64 0.18-2.fc42 fedora 86.7 KiB kernel-srpm-macros noarch 1.0-25.fc42 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-5.fc42 fedora 58.3 KiB krb5-libs x86_64 1.21.3-5.fc42 fedora 2.3 MiB libacl x86_64 2.3.2-3.fc42 fedora 38.3 KiB libarchive x86_64 3.7.7-4.fc42 fedora 930.6 KiB libattr x86_64 2.5.2-5.fc42 fedora 27.1 KiB libblkid x86_64 2.40.4-7.fc42 fedora 262.4 KiB libbrotli x86_64 1.1.0-6.fc42 fedora 841.3 KiB libcap x86_64 2.73-2.fc42 fedora 207.1 KiB libcap-ng x86_64 0.8.5-4.fc42 fedora 72.9 KiB libcom_err x86_64 1.47.2-3.fc42 fedora 67.1 KiB libcurl x86_64 8.11.1-4.fc42 fedora 842.1 KiB libeconf x86_64 0.7.6-1.fc42 fedora 64.6 KiB libevent x86_64 2.1.12-15.fc42 fedora 903.1 KiB libfdisk x86_64 2.40.4-7.fc42 fedora 372.3 KiB libffi x86_64 3.4.6-5.fc42 fedora 82.3 KiB libgcc x86_64 15.0.1-0.11.fc42 fedora 266.6 KiB libgomp x86_64 15.0.1-0.11.fc42 fedora 537.6 KiB libidn2 x86_64 2.3.8-1.fc42 fedora 556.5 KiB libmount x86_64 2.40.4-7.fc42 fedora 356.3 KiB libnghttp2 x86_64 1.64.0-3.fc42 fedora 170.4 KiB libpkgconf x86_64 2.3.0-2.fc42 fedora 78.1 KiB libpsl x86_64 0.21.5-5.fc42 fedora 76.4 KiB libselinux x86_64 3.8-1.fc42 fedora 193.1 KiB libsemanage x86_64 3.8-1.fc42 fedora 308.4 KiB libsepol x86_64 3.8-1.fc42 fedora 826.0 KiB libsmartcols x86_64 2.40.4-7.fc42 fedora 180.4 KiB libssh x86_64 0.11.1-4.fc42 fedora 565.5 KiB libssh-config noarch 0.11.1-4.fc42 fedora 277.0 B libstdc++ x86_64 15.0.1-0.11.fc42 fedora 2.8 MiB libtasn1 x86_64 4.20.0-1.fc42 fedora 176.3 KiB libtool-ltdl x86_64 2.5.4-4.fc42 fedora 70.1 KiB libunistring x86_64 1.1-9.fc42 fedora 1.7 MiB libuuid x86_64 2.40.4-7.fc42 fedora 37.3 KiB libverto x86_64 0.3.2-10.fc42 fedora 25.4 KiB libxcrypt x86_64 4.4.38-7.fc42 updates 284.5 KiB libxml2 x86_64 2.12.10-1.fc42 fedora 1.7 MiB libzstd x86_64 1.5.7-1.fc42 fedora 807.8 KiB lua-libs x86_64 5.4.7-3.fc42 fedora 280.8 KiB lua-srpm-macros noarch 1-15.fc42 fedora 1.3 KiB lz4-libs x86_64 1.10.0-2.fc42 fedora 157.4 KiB mpfr x86_64 4.2.2-1.fc42 fedora 828.8 KiB ncurses-base noarch 6.5-5.20250125.fc42 fedora 326.8 KiB ncurses-libs x86_64 6.5-5.20250125.fc42 fedora 946.3 KiB ocaml-srpm-macros noarch 10-4.fc42 fedora 1.9 KiB openblas-srpm-macros noarch 2-19.fc42 fedora 112.0 B openldap x86_64 2.6.9-3.fc42 fedora 655.1 KiB openssl-libs x86_64 1:3.2.4-3.fc42 fedora 7.8 MiB p11-kit x86_64 0.25.5-5.fc42 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-5.fc42 fedora 395.5 KiB package-notes-srpm-macros noarch 0.5-13.fc42 fedora 1.6 KiB pam-libs x86_64 1.7.0-4.fc42 fedora 126.7 KiB pcre2 x86_64 10.45-1.fc42 fedora 697.7 KiB pcre2-syntax noarch 10.45-1.fc42 fedora 273.9 KiB perl-srpm-macros noarch 1-57.fc42 fedora 861.0 B pkgconf x86_64 2.3.0-2.fc42 fedora 88.5 KiB pkgconf-m4 noarch 2.3.0-2.fc42 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-2.fc42 fedora 989.0 B popt x86_64 1.19-8.fc42 fedora 132.8 KiB publicsuffix-list-dafsa noarch 20250116-1.fc42 fedora 68.5 KiB pyproject-srpm-macros noarch 1.18.1-1.fc42 fedora 1.9 KiB python-srpm-macros noarch 3.13-4.fc42 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc42 fedora 500.0 B qt6-srpm-macros noarch 6.8.2-2.fc42 fedora 464.0 B readline x86_64 8.2-13.fc42 fedora 485.0 KiB rpm x86_64 4.20.1-1.fc42 fedora 3.1 MiB rpm-build-libs x86_64 4.20.1-1.fc42 fedora 206.6 KiB rpm-libs x86_64 4.20.1-1.fc42 fedora 721.8 KiB rpm-sequoia x86_64 1.7.0-5.fc42 fedora 2.4 MiB rust-srpm-macros noarch 26.3-4.fc42 fedora 4.8 KiB setup noarch 2.15.0-13.fc42 fedora 720.9 KiB sqlite-libs x86_64 3.47.2-2.fc42 fedora 1.5 MiB systemd-libs x86_64 257.5-2.fc42 updates 2.2 MiB systemd-standalone-sysusers x86_64 257.5-2.fc42 updates 277.3 KiB tree-sitter-srpm-macros noarch 0.1.0-8.fc42 fedora 6.5 KiB util-linux-core x86_64 2.40.4-7.fc42 fedora 1.4 MiB xxhash-libs x86_64 0.8.3-2.fc42 fedora 90.2 KiB xz-libs x86_64 1:5.6.3-3.fc42 fedora 218.3 KiB zig-srpm-macros noarch 1-4.fc42 fedora 1.1 KiB zip x86_64 3.0-43.fc42 fedora 698.5 KiB zlib-ng-compat x86_64 2.2.4-3.fc42 fedora 137.6 KiB zstd x86_64 1.5.7-1.fc42 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 148 packages Total size of inbound packages is 52 MiB. Need to download 0 B. After this operation, 176 MiB extra will be used (install 176 MiB, remove 0 B). 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Installing json-c-0:0.18-2.fc 100% | 85.9 MiB/s | 88.0 KiB | 00m00s [ 91/150] Installing jansson-0:2.14-2.f 100% | 92.2 MiB/s | 94.4 KiB | 00m00s [ 92/150] Installing libpkgconf-0:2.3.0 100% | 0.0 B/s | 79.2 KiB | 00m00s [ 93/150] Installing pkgconf-0:2.3.0-2. 100% | 7.4 MiB/s | 91.0 KiB | 00m00s [ 94/150] Installing pkgconf-pkg-config 100% | 147.8 KiB/s | 1.8 KiB | 00m00s [ 95/150] Installing xxhash-libs-0:0.8. 100% | 89.4 MiB/s | 91.6 KiB | 00m00s [ 96/150] Installing libbrotli-0:1.1.0- 100% | 274.6 MiB/s | 843.6 KiB | 00m00s [ 97/150] Installing libnghttp2-0:1.64. 100% | 167.5 MiB/s | 171.5 KiB | 00m00s [ 98/150] Installing keyutils-libs-0:1. 100% | 58.3 MiB/s | 59.7 KiB | 00m00s [ 99/150] Installing libcom_err-0:1.47. 100% | 0.0 B/s | 68.2 KiB | 00m00s [100/150] Installing libverto-0:0.3.2-1 100% | 26.6 MiB/s | 27.2 KiB | 00m00s [101/150] Installing libtool-ltdl-0:2.5 100% | 0.0 B/s | 71.2 KiB | 00m00s [102/150] Installing gdbm-libs-1:1.23-9 100% | 128.5 MiB/s | 131.6 KiB | 00m00s [103/150] Installing cyrus-sasl-lib-0:2 100% | 135.5 MiB/s | 2.3 MiB | 00m00s [104/150] Installing rust-srpm-macros-0 100% | 0.0 B/s | 5.6 KiB | 00m00s [105/150] Installing qt6-srpm-macros-0: 100% | 0.0 B/s | 740.0 B | 00m00s [106/150] Installing qt5-srpm-macros-0: 100% | 0.0 B/s | 776.0 B | 00m00s [107/150] Installing perl-srpm-macros-0 100% | 0.0 B/s | 1.1 KiB | 00m00s [108/150] Installing package-notes-srpm 100% | 0.0 B/s | 2.0 KiB | 00m00s [109/150] Installing openblas-srpm-macr 100% | 0.0 B/s | 392.0 B | 00m00s [110/150] Installing ocaml-srpm-macros- 100% | 0.0 B/s | 2.2 KiB | 00m00s [111/150] Installing kernel-srpm-macros 100% | 0.0 B/s | 2.3 KiB | 00m00s [112/150] Installing gnat-srpm-macros-0 100% | 0.0 B/s | 1.3 KiB | 00m00s [113/150] Installing ghc-srpm-macros-0: 100% | 0.0 B/s | 1.0 KiB | 00m00s [114/150] Installing fpc-srpm-macros-0: 100% | 0.0 B/s | 420.0 B | 00m00s [115/150] Installing ansible-srpm-macro 100% | 35.4 MiB/s | 36.2 KiB | 00m00s [116/150] Installing coreutils-common-0 100% | 398.3 MiB/s | 11.2 MiB | 00m00s [117/150] Installing openssl-libs-1:3.2 100% | 432.5 MiB/s | 7.8 MiB | 00m00s [118/150] Installing coreutils-0:9.6-2. 100% | 163.2 MiB/s | 5.5 MiB | 00m00s [119/150] Installing ca-certificates-0: 100% | 2.0 MiB/s | 2.4 MiB | 00m01s [120/150] Installing libarchive-0:3.7.7 100% | 227.7 MiB/s | 932.6 KiB | 00m00s [121/150] Installing krb5-libs-0:1.21.3 100% | 328.5 MiB/s | 2.3 MiB | 00m00s [122/150] Installing libssh-0:0.11.1-4. 100% | 277.1 MiB/s | 567.5 KiB | 00m00s [123/150] Installing gzip-0:1.13-3.fc42 100% | 27.8 MiB/s | 398.4 KiB | 00m00s [124/150] Installing rpm-sequoia-0:1.7. 100% | 402.4 MiB/s | 2.4 MiB | 00m00s [125/150] Installing rpm-libs-0:4.20.1- 100% | 353.2 MiB/s | 723.4 KiB | 00m00s [126/150] Installing rpm-build-libs-0:4 100% | 202.5 MiB/s | 207.4 KiB | 00m00s [127/150] Installing libevent-0:2.1.12- 100% | 295.2 MiB/s | 906.9 KiB | 00m00s [128/150] Installing openldap-0:2.6.9-3 100% | 214.5 MiB/s | 658.9 KiB | 00m00s [129/150] Installing libcurl-0:8.11.1-4 100% | 274.5 MiB/s | 843.2 KiB | 00m00s [130/150] Installing elfutils-debuginfo 100% | 6.2 MiB/s | 82.2 KiB | 00m00s [131/150] Installing elfutils-0:0.192-9 100% | 138.1 MiB/s | 2.6 MiB | 00m00s [132/150] Installing binutils-0:2.44-3. 100% | 327.9 MiB/s | 25.9 MiB | 00m00s [133/150] Installing gdb-minimal-0:16.2 100% | 300.1 MiB/s | 13.2 MiB | 00m00s [134/150] Installing debugedit-0:5.1-5. 100% | 14.7 MiB/s | 195.4 KiB | 00m00s [135/150] Installing curl-0:8.11.1-4.fc 100% | 20.1 MiB/s | 453.1 KiB | 00m00s [136/150] Installing rpm-0:4.20.1-1.fc4 100% | 96.1 MiB/s | 2.5 MiB | 00m00s [137/150] Installing efi-srpm-macros-0: 100% | 0.0 B/s | 41.1 KiB | 00m00s [138/150] Installing lua-srpm-macros-0: 100% | 0.0 B/s | 1.9 KiB | 00m00s [139/150] Installing tree-sitter-srpm-m 100% | 0.0 B/s | 7.4 KiB | 00m00s [140/150] Installing zig-srpm-macros-0: 100% | 0.0 B/s | 1.7 KiB | 00m00s [141/150] Installing fonts-srpm-macros- 100% | 0.0 B/s | 57.0 KiB | 00m00s [142/150] Installing forge-srpm-macros- 100% | 0.0 B/s | 40.3 KiB | 00m00s [143/150] Installing go-srpm-macros-0:3 100% | 0.0 B/s | 62.0 KiB | 00m00s [144/150] Installing python-srpm-macros 100% | 50.9 MiB/s | 52.2 KiB | 00m00s [145/150] Installing redhat-rpm-config- 100% | 93.9 MiB/s | 192.2 KiB | 00m00s [146/150] Installing rpm-build-0:4.20.1 100% | 12.4 MiB/s | 177.4 KiB | 00m00s [147/150] Installing pyproject-srpm-mac 100% | 0.0 B/s | 2.5 KiB | 00m00s [148/150] Installing which-0:2.23-1.fc4 100% | 6.4 MiB/s | 85.6 KiB | 00m00s [149/150] Installing util-linux-0:2.40. 100% | 98.9 MiB/s | 3.5 MiB | 00m00s [150/150] Installing info-0:7.2-3.fc42. 100% | 223.6 KiB/s | 358.3 KiB | 00m02s Complete! Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.6.0-1.fc42.x86_64 alternatives-1.32-1.fc42.x86_64 ansible-srpm-macros-1-17.1.fc42.noarch audit-libs-4.0.3-2.fc42.x86_64 basesystem-11-22.fc42.noarch bash-5.2.37-1.fc42.x86_64 binutils-2.44-3.fc42.x86_64 build-reproducibility-srpm-macros-0.6.0-1.fc42.noarch bzip2-1.0.8-20.fc42.x86_64 bzip2-libs-1.0.8-20.fc42.x86_64 ca-certificates-2024.2.69_v8.0.401-6.fc42.noarch coreutils-9.6-2.fc42.x86_64 coreutils-common-9.6-2.fc42.x86_64 cpio-2.15-4.fc42.x86_64 crypto-policies-20250214-1.gitff7551b.fc42.noarch curl-8.11.1-4.fc42.x86_64 cyrus-sasl-lib-2.1.28-30.fc42.x86_64 debugedit-5.1-5.fc42.x86_64 diffutils-3.12-1.fc42.x86_64 dwz-0.15-9.fc42.x86_64 ed-1.21-2.fc42.x86_64 efi-srpm-macros-6-2.fc42.noarch elfutils-0.192-9.fc42.x86_64 elfutils-debuginfod-client-0.192-9.fc42.x86_64 elfutils-default-yama-scope-0.192-9.fc42.noarch elfutils-libelf-0.192-9.fc42.x86_64 elfutils-libs-0.192-9.fc42.x86_64 fedora-gpg-keys-42-1.noarch fedora-release-42-26.noarch fedora-release-common-42-26.noarch fedora-release-identity-basic-42-26.noarch fedora-repos-42-1.noarch file-5.46-1.fc42.x86_64 file-libs-5.46-1.fc42.x86_64 filesystem-3.18-36.fc42.x86_64 filesystem-srpm-macros-3.18-36.fc42.noarch findutils-4.10.0-5.fc42.x86_64 fonts-srpm-macros-2.0.5-21.fc42.noarch forge-srpm-macros-0.4.0-2.fc42.noarch fpc-srpm-macros-1.3-14.fc42.noarch gawk-5.3.1-1.fc42.x86_64 gdb-minimal-16.2-3.fc42.x86_64 gdbm-libs-1.23-9.fc42.x86_64 ghc-srpm-macros-1.9.2-2.fc42.noarch glibc-2.41-3.fc42.x86_64 glibc-common-2.41-3.fc42.x86_64 glibc-gconv-extra-2.41-3.fc42.x86_64 glibc-minimal-langpack-2.41-3.fc42.x86_64 gmp-6.3.0-4.fc42.x86_64 gnat-srpm-macros-6-7.fc42.noarch go-srpm-macros-3.6.0-6.fc42.noarch gpg-pubkey-105ef944-65ca83d1 grep-3.11-10.fc42.x86_64 gzip-1.13-3.fc42.x86_64 info-7.2-3.fc42.x86_64 jansson-2.14-2.fc42.x86_64 json-c-0.18-2.fc42.x86_64 kernel-srpm-macros-1.0-25.fc42.noarch keyutils-libs-1.6.3-5.fc42.x86_64 krb5-libs-1.21.3-5.fc42.x86_64 libacl-2.3.2-3.fc42.x86_64 libarchive-3.7.7-4.fc42.x86_64 libattr-2.5.2-5.fc42.x86_64 libblkid-2.40.4-7.fc42.x86_64 libbrotli-1.1.0-6.fc42.x86_64 libcap-2.73-2.fc42.x86_64 libcap-ng-0.8.5-4.fc42.x86_64 libcom_err-1.47.2-3.fc42.x86_64 libcurl-8.11.1-4.fc42.x86_64 libeconf-0.7.6-1.fc42.x86_64 libevent-2.1.12-15.fc42.x86_64 libfdisk-2.40.4-7.fc42.x86_64 libffi-3.4.6-5.fc42.x86_64 libgcc-15.0.1-0.11.fc42.x86_64 libgomp-15.0.1-0.11.fc42.x86_64 libidn2-2.3.8-1.fc42.x86_64 libmount-2.40.4-7.fc42.x86_64 libnghttp2-1.64.0-3.fc42.x86_64 libpkgconf-2.3.0-2.fc42.x86_64 libpsl-0.21.5-5.fc42.x86_64 libselinux-3.8-1.fc42.x86_64 libsemanage-3.8-1.fc42.x86_64 libsepol-3.8-1.fc42.x86_64 libsmartcols-2.40.4-7.fc42.x86_64 libssh-0.11.1-4.fc42.x86_64 libssh-config-0.11.1-4.fc42.noarch libstdc++-15.0.1-0.11.fc42.x86_64 libtasn1-4.20.0-1.fc42.x86_64 libtool-ltdl-2.5.4-4.fc42.x86_64 libunistring-1.1-9.fc42.x86_64 libuuid-2.40.4-7.fc42.x86_64 libverto-0.3.2-10.fc42.x86_64 libxcrypt-4.4.38-7.fc42.x86_64 libxml2-2.12.10-1.fc42.x86_64 libzstd-1.5.7-1.fc42.x86_64 lua-libs-5.4.7-3.fc42.x86_64 lua-srpm-macros-1-15.fc42.noarch lz4-libs-1.10.0-2.fc42.x86_64 mpfr-4.2.2-1.fc42.x86_64 ncurses-base-6.5-5.20250125.fc42.noarch ncurses-libs-6.5-5.20250125.fc42.x86_64 ocaml-srpm-macros-10-4.fc42.noarch openblas-srpm-macros-2-19.fc42.noarch openldap-2.6.9-3.fc42.x86_64 openssl-libs-3.2.4-3.fc42.x86_64 p11-kit-0.25.5-5.fc42.x86_64 p11-kit-trust-0.25.5-5.fc42.x86_64 package-notes-srpm-macros-0.5-13.fc42.noarch pam-libs-1.7.0-4.fc42.x86_64 patch-2.8-1.fc42.x86_64 pcre2-10.45-1.fc42.x86_64 pcre2-syntax-10.45-1.fc42.noarch perl-srpm-macros-1-57.fc42.noarch pkgconf-2.3.0-2.fc42.x86_64 pkgconf-m4-2.3.0-2.fc42.noarch pkgconf-pkg-config-2.3.0-2.fc42.x86_64 popt-1.19-8.fc42.x86_64 publicsuffix-list-dafsa-20250116-1.fc42.noarch pyproject-srpm-macros-1.18.1-1.fc42.noarch python-srpm-macros-3.13-4.fc42.noarch qt5-srpm-macros-5.15.15-1.fc42.noarch qt6-srpm-macros-6.8.2-2.fc42.noarch readline-8.2-13.fc42.x86_64 redhat-rpm-config-342-4.fc42.noarch rpm-4.20.1-1.fc42.x86_64 rpm-build-4.20.1-1.fc42.x86_64 rpm-build-libs-4.20.1-1.fc42.x86_64 rpm-libs-4.20.1-1.fc42.x86_64 rpm-sequoia-1.7.0-5.fc42.x86_64 rust-srpm-macros-26.3-4.fc42.noarch sed-4.9-4.fc42.x86_64 setup-2.15.0-13.fc42.noarch shadow-utils-4.17.4-1.fc42.x86_64 sqlite-libs-3.47.2-2.fc42.x86_64 systemd-libs-257.5-2.fc42.x86_64 systemd-standalone-sysusers-257.5-2.fc42.x86_64 tar-1.35-5.fc42.x86_64 tree-sitter-srpm-macros-0.1.0-8.fc42.noarch unzip-6.0-66.fc42.x86_64 util-linux-2.40.4-7.fc42.x86_64 util-linux-core-2.40.4-7.fc42.x86_64 which-2.23-1.fc42.x86_64 xxhash-libs-0.8.3-2.fc42.x86_64 xz-5.6.3-3.fc42.x86_64 xz-libs-5.6.3-3.fc42.x86_64 zig-srpm-macros-1-4.fc42.noarch zip-3.0-43.fc42.x86_64 zlib-ng-compat-2.2.4-3.fc42.x86_64 zstd-1.5.7-1.fc42.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-42-x86_64-1745099881.109336/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-4teza_9q/R-CRAN-BayesXsrc/R-CRAN-BayesXsrc.spec) Config(child) 0 minutes 9 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm) Config(fedora-42-x86_64) Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-42-x86_64-1745099881.109336/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management from host and used with --installroot: rpm-4.20.1-1.fc41.x86_64 rpm-sequoia-1.7.0-2.fc41.x86_64 python3-dnf-4.23.0-1.fc41.noarch python3-dnf-plugins-core-4.10.1-1.fc41.noarch dnf5-5.2.12.0-2.fc41.x86_64 dnf5-plugins-5.2.12.0-2.fc41.x86_64 Finish: chroot init Start: build phase for R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm Start: build setup for R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Wrote: /builddir/build/SRPMS/R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Updating and loading repositories: updates 100% | 185.9 KiB/s | 30.1 KiB | 00m00s fedora 100% | 314.8 KiB/s | 28.0 KiB | 00m00s Copr repository 100% | 85.5 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 138.4 MiB/s | 13.1 MiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing: R-devel x86_64 4.5.0-3.fc42~bootstrap copr_base 0.0 B Installing dependencies: R-core x86_64 4.5.0-3.fc42~bootstrap copr_base 103.7 MiB R-core-devel x86_64 4.5.0-3.fc42~bootstrap copr_base 411.0 KiB R-java x86_64 4.5.0-3.fc42~bootstrap copr_base 0.0 B R-java-devel x86_64 4.5.0-3.fc42~bootstrap copr_base 0.0 B R-rpm-macros noarch 1.2.1-12.fc42 fedora 5.6 KiB abattis-cantarell-vf-fonts noarch 0.301-14.fc42 fedora 192.7 KiB alsa-lib x86_64 1.2.14-2.fc42 updates 1.4 MiB annobin-docs noarch 12.88-1.fc42 fedora 98.6 KiB annobin-plugin-gcc x86_64 12.88-1.fc42 fedora 991.7 KiB avahi-libs x86_64 0.9~rc2-2.fc42 fedora 183.6 KiB bzip2-devel x86_64 1.0.8-20.fc42 fedora 309.8 KiB cairo x86_64 1.18.2-3.fc42 fedora 1.8 MiB cmake-filesystem x86_64 3.31.6-2.fc42 fedora 0.0 B cpp x86_64 15.0.1-0.11.fc42 fedora 37.8 MiB cups-filesystem noarch 1:2.4.12-2.fc42 updates 0.0 B cups-libs x86_64 1:2.4.12-2.fc42 updates 618.7 KiB dbus-libs x86_64 1:1.16.0-3.fc42 fedora 349.5 KiB default-fonts-core-sans noarch 4.2-4.fc42 fedora 11.9 KiB desktop-file-utils x86_64 0.28-1.fc42 fedora 218.4 KiB emacs-filesystem noarch 1:30.0-4.fc42 fedora 0.0 B flexiblas x86_64 3.4.5-1.fc42 fedora 50.4 KiB flexiblas-devel x86_64 3.4.5-1.fc42 fedora 4.9 MiB flexiblas-netlib x86_64 3.4.5-1.fc42 fedora 10.9 MiB flexiblas-netlib64 x86_64 3.4.5-1.fc42 fedora 11.0 MiB flexiblas-openblas-openmp x86_64 3.4.5-1.fc42 fedora 39.2 KiB flexiblas-openblas-openmp64 x86_64 3.4.5-1.fc42 fedora 39.2 KiB fontconfig x86_64 2.16.0-2.fc42 fedora 764.7 KiB fonts-filesystem noarch 1:2.0.5-21.fc42 fedora 0.0 B freetype x86_64 2.13.3-2.fc42 fedora 858.2 KiB fribidi x86_64 1.0.16-2.fc42 fedora 194.3 KiB gcc x86_64 15.0.1-0.11.fc42 fedora 110.9 MiB gcc-c++ x86_64 15.0.1-0.11.fc42 fedora 41.3 MiB gcc-gfortran x86_64 15.0.1-0.11.fc42 fedora 40.3 MiB gcc-plugin-annobin x86_64 15.0.1-0.11.fc42 fedora 57.2 KiB glib2 x86_64 2.84.1-1.fc42 updates 14.7 MiB glibc-devel x86_64 2.41-3.fc42 updates 2.3 MiB gnutls x86_64 3.8.9-3.fc42 fedora 3.6 MiB google-noto-fonts-common noarch 20250301-1.fc42 fedora 17.7 KiB google-noto-sans-vf-fonts noarch 20250301-1.fc42 fedora 1.4 MiB graphite2 x86_64 1.3.14-18.fc42 fedora 195.8 KiB harfbuzz x86_64 10.4.0-1.fc42 fedora 2.7 MiB java-21-openjdk x86_64 1:21.0.6.0.7-6.fc42 fedora 1.0 MiB java-21-openjdk-devel x86_64 1:21.0.6.0.7-6.fc42 fedora 11.2 MiB java-21-openjdk-headless x86_64 1:21.0.6.0.7-6.fc42 fedora 201.8 MiB javapackages-filesystem noarch 6.4.0-5.fc42 fedora 2.0 KiB jbigkit-libs x86_64 2.1-31.fc42 fedora 121.4 KiB kernel-headers x86_64 6.14.0-63.fc42 fedora 6.5 MiB less x86_64 668-2.fc42 fedora 405.8 KiB libICE x86_64 1.1.2-2.fc42 fedora 198.4 KiB libRmath x86_64 4.5.0-3.fc42~bootstrap copr_base 242.7 KiB libRmath-devel x86_64 4.5.0-3.fc42~bootstrap copr_base 19.9 KiB libSM x86_64 1.2.5-2.fc42 fedora 105.0 KiB libX11 x86_64 1.8.11-1.fc42 fedora 1.3 MiB libX11-common noarch 1.8.11-1.fc42 fedora 1.2 MiB libX11-devel x86_64 1.8.11-1.fc42 fedora 1.0 MiB libX11-xcb x86_64 1.8.11-1.fc42 fedora 10.9 KiB libXau x86_64 1.0.12-2.fc42 fedora 76.9 KiB libXau-devel x86_64 1.0.12-2.fc42 fedora 7.5 KiB libXcomposite x86_64 0.4.6-5.fc42 fedora 44.4 KiB libXext x86_64 1.3.6-3.fc42 fedora 90.0 KiB libXft x86_64 2.3.8-8.fc42 fedora 168.4 KiB libXi x86_64 1.8.2-2.fc42 fedora 84.6 KiB libXmu x86_64 1.2.1-3.fc42 fedora 199.3 KiB libXrender x86_64 0.9.12-2.fc42 fedora 50.0 KiB libXt x86_64 1.3.1-2.fc42 fedora 429.7 KiB libXtst x86_64 1.2.5-2.fc42 fedora 33.5 KiB libdatrie x86_64 0.2.13-11.fc42 fedora 57.8 KiB libdeflate x86_64 1.23-2.fc42 fedora 122.7 KiB libdeflate-devel x86_64 1.23-2.fc42 fedora 25.9 KiB libfontenc x86_64 1.1.8-3.fc42 fedora 70.9 KiB libgfortran x86_64 15.0.1-0.11.fc42 fedora 3.3 MiB libicu x86_64 76.1-4.fc42 fedora 36.3 MiB libicu-devel x86_64 76.1-4.fc42 fedora 5.0 MiB libjpeg-turbo x86_64 3.1.0-2.fc42 fedora 803.2 KiB liblerc x86_64 4.0.0-8.fc42 fedora 636.1 KiB libmpc x86_64 1.3.1-7.fc42 fedora 164.5 KiB libpng x86_64 2:1.6.44-2.fc42 fedora 241.7 KiB libquadmath x86_64 15.0.1-0.11.fc42 fedora 317.9 KiB libquadmath-devel x86_64 15.0.1-0.11.fc42 fedora 21.9 KiB libstdc++-devel x86_64 15.0.1-0.11.fc42 fedora 16.0 MiB libthai x86_64 0.1.29-10.fc42 fedora 783.4 KiB libtiff x86_64 4.7.0-3.fc42 fedora 619.1 KiB libtirpc x86_64 1.3.6-1.rc3.fc42.2 fedora 199.0 KiB libtirpc-devel x86_64 1.3.6-1.rc3.fc42.2 fedora 251.6 KiB libwebp x86_64 1.5.0-2.fc42 fedora 947.6 KiB libxcb x86_64 1.17.0-5.fc42 fedora 1.1 MiB libxcb-devel x86_64 1.17.0-5.fc42 fedora 2.7 MiB libxcrypt-devel x86_64 4.4.38-7.fc42 updates 30.8 KiB libzstd-devel x86_64 1.5.7-1.fc42 fedora 208.0 KiB lksctp-tools x86_64 1.0.20-2.fc42 fedora 250.3 KiB make x86_64 1:4.4.1-10.fc42 fedora 1.8 MiB mkfontscale x86_64 1.2.3-2.fc42 fedora 45.0 KiB nettle x86_64 3.10.1-1.fc42 fedora 790.5 KiB nspr x86_64 4.36.0-5.fc42 fedora 315.5 KiB nss x86_64 3.109.0-1.fc42 fedora 1.9 MiB nss-softokn x86_64 3.109.0-1.fc42 fedora 1.9 MiB nss-softokn-freebl x86_64 3.109.0-1.fc42 fedora 852.4 KiB nss-sysinit x86_64 3.109.0-1.fc42 fedora 18.1 KiB nss-util x86_64 3.109.0-1.fc42 fedora 204.8 KiB openblas x86_64 0.3.29-1.fc42 fedora 111.7 KiB openblas-openmp x86_64 0.3.29-1.fc42 fedora 43.7 MiB openblas-openmp64 x86_64 0.3.29-1.fc42 fedora 43.9 MiB pango x86_64 1.56.3-1.fc42 fedora 1.0 MiB pcre2-devel x86_64 10.45-1.fc42 fedora 2.1 MiB pcre2-utf16 x86_64 10.45-1.fc42 fedora 626.3 KiB pcre2-utf32 x86_64 10.45-1.fc42 fedora 598.2 KiB pixman x86_64 0.44.2-2.fc42 fedora 674.2 KiB tcl8 x86_64 1:8.6.15-10.fc42 fedora 4.3 MiB tk8 x86_64 1:8.6.15-5.fc42 fedora 3.2 MiB tre x86_64 0.8.0-47.20140228gitc2f5d13.fc42 fedora 75.8 KiB tre-common noarch 0.8.0-47.20140228gitc2f5d13.fc42 fedora 81.0 KiB tre-devel x86_64 0.8.0-47.20140228gitc2f5d13.fc42 fedora 10.7 KiB ttmkfdir x86_64 3.0.9-72.fc42 fedora 118.5 KiB tzdata noarch 2025b-1.fc42 fedora 1.6 MiB tzdata-java noarch 2025b-1.fc42 fedora 100.1 KiB xdg-utils noarch 1.2.1-3.fc42 fedora 346.3 KiB xml-common noarch 0.6.3-66.fc42 fedora 78.4 KiB xorg-x11-fonts-Type1 noarch 7.5-40.fc42 fedora 863.3 KiB xorg-x11-proto-devel noarch 2024.1-4.fc42 fedora 1.7 MiB xz-devel x86_64 1:5.6.3-3.fc42 fedora 255.6 KiB zlib-ng-compat-devel x86_64 2.2.4-3.fc42 fedora 107.0 KiB Transaction Summary: Installing: 122 packages Total size of inbound packages is 260 MiB. Need to download 0 B. After this operation, 803 MiB extra will be used (install 803 MiB, remove 0 B). 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Finish: build setup for R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm Start: rpmbuild R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm Building target platforms: x86_64 Building for target x86_64 warning: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.wkX4lg Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.BBB1qN + umask 022 + cd /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + cd /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + rm -rf BayesXsrc + /usr/bin/mkdir -p BayesXsrc + cd BayesXsrc + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/BayesXsrc_3.0-6.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + find -type f -executable -exec grep -Iq . '{}' ';' -exec sed -i -e '$a\' '{}' ';' + '[' -d BayesXsrc/src ']' + find BayesXsrc/src -type f -exec sed -i s@/usr/bin/strip@/usr/bin/true@g '{}' ';' + '[' -d BayesXsrc/src ']' + find BayesXsrc/src/Makefile BayesXsrc/src/Makefile.inner.win BayesXsrc/src/Makefile.win -type f -exec sed -i s@-g0@@g '{}' ';' + find -type f -executable -exec sed -Ei 's@#!( )*/usr/local/bin@#!/usr/bin@g' '{}' ';' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.rb4Ya2 + umask 022 + cd /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BayesXsrc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.t6hx9H + umask 022 + cd /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + '[' /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT ++ dirname /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT + mkdir -p /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + mkdir /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT + CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -mtls-dialect=gnu2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd BayesXsrc + mkdir -p /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT/usr/local/lib/R/library + /usr/bin/R CMD INSTALL -l /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT/usr/local/lib/R/library BayesXsrc * installing *source* package ‘BayesXsrc’ ... ** this is package ‘BayesXsrc’ version ‘3.0-6’ ** package ‘BayesXsrc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/andrea/baseline.cpp -o bayesxsrc/andrea/baseline.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/andrea/baseline.cpp: In constructor ‘MCMC::pspline_baseline::pspline_baseline(MCMC::MCMCoptions*, MCMC::DISTRIBUTION*, MCMC::FULLCOND_const*, const datamatrix&, const datamatrix&, const unsigned int&, const unsigned int&, const MCMC::knotpos&, const double&, const unsigned int&, const unsigned int&, const MCMC::fieldtype&, const ST::string&, const ST::string&, const ST::string&, const int&, const unsigned int&, const datamatrix&)’: bayesxsrc/andrea/baseline.cpp:197:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 197 | for(i=0;i, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 1387 | for(j=0;j, unsigned int>::value_type’ {aka ‘unsigned int’} [-Wsign-compare] 1438 | if (j == matquant[blocksize-min]-2) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/baseline.cpp:1449:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1449 | for(i=0;iget_nrobs();i++) | ~^~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/baseline.cpp:1509:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1509 | for(i=0;iget_nrobs();i++) | ~^~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/baseline.cpp:1530:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1530 | for(i=0;iget_nrobs();i++,freqwork++,workindex++) | ~^~~~~~~~~~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/andrea/cox.cpp -o bayesxsrc/andrea/cox.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/andrea/IWLS_baseline.cpp -o bayesxsrc/andrea/IWLS_baseline.o /bin/sh: line 1: gsl-config: command not found In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/mcmc/mcmc_nonpbasis.h:33, from bayesxsrc/andrea/IWLS_baseline.h:31, from bayesxsrc/andrea/IWLS_baseline.cpp:20: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ 2099 | decomp(); | ^~~~~~ bayesxsrc/andrea/IWLS_baseline.cpp:497:18: required from here 497 | prec_env.solveU(beta,betahelp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | kget_nrobs();i++,freqwork++,workindex++) | ~^~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/multibaseline.cpp:207:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 207 | for(i=0;iget_nrobs();i++,freqwork++,workindex++) | ~^~~~~~~~~~~~~~~~~~~ bayesxsrc/andrea/multibaseline.cpp:438:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 438 | for(i=0;iget_nrobs();i++,freqwork++,workindex++) | ~^~~~~~~~~~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/andrea/multistate.cpp -o bayesxsrc/andrea/multistate.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/Random.cpp -o bayesxsrc/bib/Random.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/bib/Random.cpp: In function ‘double randnumbers::pbivnu(const double&, const double&, const double&)’: bayesxsrc/bib/Random.cpp:1223:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1223 | for(int j=0; j') && (i+1 < len) && (str[i+1] == '=') ) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp:602:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 602 | else if ( (str[i] == '<') && (i+1 < len) && (str[i+1] == '=') ) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp:612:44: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 612 | else if ( (str[i] == '!') && (i+1 < len) && (str[i+1] == '=') ) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘int ST::string::isfunction(ST::string&, ST::string&) const’: bayesxsrc/bib/clstring.cpp:678:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 678 | if (endbr == len-1) | ~~~~~~^~~~~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘int ST::string::issubscribing(ST::string&, ST::string&) const’: bayesxsrc/bib/clstring.cpp:703:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 703 | if (endbr == len-1) | ~~~~~~^~~~~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘int ST::string::isint() const’: bayesxsrc/bib/clstring.cpp:807:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 807 | while ((i < len) && (h == 1)) | ~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘std::vector ST::string::strtoken(const ST::string&, bool) const’: bayesxsrc/bib/clstring.cpp:979:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 979 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:983:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 983 | while ( (i < len) && (str[i] == ' ') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:994:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 994 | while ( (i < len) && (parsingsigns.checksign(str[i]) == -1) ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘int ST::string::strtoken_quot(std::vector&, const ST::string&, bool) const’: bayesxsrc/bib/clstring.cpp:1013:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1013 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1017:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1017 | while ( (i < len) && (str[i] == ' ') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1031:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1031 | while ( (i < len) && (parsingsigns.checksign(str[i]) == -1) ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1039:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1039 | while ( ( i< len) && (str[i] != '"') ) | ~^~~~~ bayesxsrc/bib/clstring.cpp:1042:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1042 | if ( ( i < len) && (str[i] == '"') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘std::vector ST::string::strtoken2(const ST::string&, bool&) const’: bayesxsrc/bib/clstring.cpp:1072:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1072 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1095:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1095 | if (anf < len) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘std::vector ST::string::strtoken2_quot(const ST::string&, bool&, bool&) const’: bayesxsrc/bib/clstring.cpp:1117:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1117 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1133:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1133 | while ( ( i< len) && (str[i] != '"') ) | ~^~~~~ bayesxsrc/bib/clstring.cpp:1136:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1136 | if ( ( i < len) && (str[i] == '"') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1154:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1154 | if (anf < len) | ~~~~^~~~~ bayesxsrc/bib/clstring.cpp: In member function ‘std::__cxx11::list ST::string::strtokenlist(const ST::string&, bool) const’: bayesxsrc/bib/clstring.cpp:1252:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1252 | while (i < len) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1256:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1256 | while ( (i < len) && (str[i] == ' ') ) | ~~^~~~~ bayesxsrc/bib/clstring.cpp:1267:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1267 | while ( (i < len) && (parsingsigns.checksign(str[i]) == -1) ) | ~~^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/command.cpp -o bayesxsrc/bib/command.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/data.cpp -o bayesxsrc/bib/data.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/bib/data.cpp: In member function ‘void dataset::filldata(std::istream&, ST::string&, const unsigned int&)’: bayesxsrc/bib/data.cpp:370:21: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 370 | if ((*i).size() != o) | ~~~~~~~~~~~~^~~~ bayesxsrc/bib/data.cpp:370:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 370 | if ((*i).size() != o) | ^~ bayesxsrc/bib/data.cpp:373:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 373 | i++; | ^ bayesxsrc/bib/data.cpp: In member function ‘void dataset::marketing(std::vector&, ST::string&, int&, double&)’: bayesxsrc/bib/data.cpp:1497:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1497 | while(j&, std::vector&)’: bayesxsrc/bib/dataobj.cpp:210:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 210 | while (i::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495, from bayesxsrc/bib/data.h:31: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/envmatrix.cpp -o bayesxsrc/bib/envmatrix.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/envmatrix_penalty.cpp -o bayesxsrc/bib/envmatrix_penalty.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/graph.cpp -o bayesxsrc/bib/graph.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/bib/graph.cpp: In constructor ‘graph::graph(const ST::string&)’: bayesxsrc/bib/graph.cpp:204:46: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 204 | if( (i==weightcheck) && (token.size()==2*edgesi) ) | ~~~~~~~~~~~~^~~~~~~~~~ bayesxsrc/bib/graph.cpp:217:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 217 | if (token.size() == edgesi) | ~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/graph.cpp:246:28: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 246 | if (token.size() == edgesi*2) | ~~~~~~~~~~~~~^~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/map.cpp -o bayesxsrc/bib/map.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/bib/map.cpp: In constructor ‘MAP::map::map(const datamatrix&, const double&, const MAP::metric&)’: bayesxsrc/bib/map.cpp:687:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 687 | for (i=1;i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 838 | for(j=0;j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 850 | for(j=0;j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 862 | for(j=0;j >&, std::vector >&, std::vector&, statmatrix&)’: bayesxsrc/bib/map.cpp:1901:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1901 | for(i=posbeghelp[inveffindex(j,0)];i<=posendhelp[inveffindex(j,0)];i++) `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/mapobject.cpp -o bayesxsrc/bib/mapobject.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/model.cpp -o bayesxsrc/bib/model.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/model_remlreg.cpp -o bayesxsrc/bib/model_remlreg.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/model_stepwise.cpp -o bayesxsrc/bib/model_stepwise.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/option.cpp -o bayesxsrc/bib/option.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/bib/option.cpp: In member function ‘virtual int stroption::parse(const ST::string&)’: bayesxsrc/bib/option.cpp:364:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 364 | while ((i < admissible.size()) && (h == -1)) | ~~^~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/option.cpp: In member function ‘void optionlist::parsemultiple(const ST::string&)’: bayesxsrc/bib/option.cpp:663:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 663 | while (j < token.size()) | ~~^~~~~~~~~~~~~~ bayesxsrc/bib/option.cpp:694:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 694 | while ( (j&)’: bayesxsrc/bib/sparsemat.cpp:218:25: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘unsigned int’ [-Wsign-compare] 218 | if (index(k,0) == c) | ~~~~~~~~~~~^~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/statmat.cpp -o bayesxsrc/bib/statmat.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/statmat_penalty.cpp -o bayesxsrc/bib/statmat_penalty.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/statobj.cpp -o bayesxsrc/bib/statobj.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/bib/statobj.cpp: In function ‘int findstatobject(const std::vector&, const ST::string&, const ST::string&)’: bayesxsrc/bib/statobj.cpp:159:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 159 | while ( (i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4373 | for (j=0;j::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 163 | while ( (i < datasets->size()) && (existing == false) ) | ~~^~~~~~~~~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/bib/vectorn.cpp -o bayesxsrc/bib/vectorn.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/adjacency.cpp -o bayesxsrc/dag/adjacency.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/dagobject.cpp -o bayesxsrc/dag/dagobject.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/fullcond_dag.cpp -o bayesxsrc/dag/fullcond_dag.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/fullcond_dag_d.cpp -o bayesxsrc/dag/fullcond_dag_d.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/fullcond_dag_ia.cpp -o bayesxsrc/dag/fullcond_dag_ia.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/fullcond_dag_ia_mixed.cpp -o bayesxsrc/dag/fullcond_dag_ia_mixed.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/fullcond_rj.cpp -o bayesxsrc/dag/fullcond_rj.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/dag/fullcond_rj.cpp: In member function ‘void MCMC::FULLCOND_rj::outres_dags()’: bayesxsrc/dag/fullcond_rj.cpp:1486:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1486 | for(k=freq_size-1; k>=freq_size-limit_number; k--) | ~^~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/dag/fullcond_rj.cpp:1570:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1570 | for(k=freq_size-1; k>=freq_size-limit_number; k--) | ~^~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/dag/fullcond_rj.cpp: In member function ‘void MCMC::FULLCOND_rj::outres_essentials()’: bayesxsrc/dag/fullcond_rj.cpp:1661:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1661 | for(k=list_size-1; k>=list_size-limit_number; k--) | ~^~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/dag/fullcond_rj.cpp:1745:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1745 | for(k=list_size-1; k>=list_size-limit_number; k--) | ~^~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/dag/fullcond_rj.cpp: In member function ‘void MCMC::FULLCOND_rj::write_out_resfile()’: bayesxsrc/dag/fullcond_rj.cpp:1880:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1880 | for(i=0; i statmatrix::corr() [with T = double]’: bayesxsrc/dag/fullcond_rj.cpp:1378:31: required from here 1378 | correlation.assign(data.corr()); | ~~~~~~~~~^~ bayesxsrc/bib/statmat.cpp:1334:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1334 | for (i=0;i statmatrix::get_cov_iX(int, int) [with T = double]’: bayesxsrc/bib/statmat.cpp:1518:37: required from ‘statmatrix statmatrix::partial_var() [with T = double]’ 1518 | cov_iX.assign(cov_all.get_cov_iX(i,j)); | ~~~~~~~~~~~~~~~~~~^~~~~ bayesxsrc/dag/fullcond_rj.cpp:1379:39: required from here 1379 | partial_corr.assign(data.partial_var()); | ~~~~~~~~~~~~~~~~^~ bayesxsrc/bib/statmat.cpp:1421:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1421 | for(k=0; krows(); k++) | ~^~~~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/fullcond_rj_int.cpp -o bayesxsrc/dag/fullcond_rj_int.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/fullcond_rj_mix.cpp -o bayesxsrc/dag/fullcond_rj_mix.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/func_dag.cpp -o bayesxsrc/dag/func_dag.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/ia.cpp -o bayesxsrc/dag/ia.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/dag/ia_mixed.cpp -o bayesxsrc/dag/ia_mixed.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/leyre/nbinomial.cpp -o bayesxsrc/leyre/nbinomial.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/leyre/zip.cpp -o bayesxsrc/leyre/zip.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/baseline_reml.cpp -o bayesxsrc/mcmc/baseline_reml.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/mcmc/baseline_reml.cpp: In member function ‘void MCMC::baseline_reml::multDG(datamatrix&, const datamatrix&)’: bayesxsrc/mcmc/baseline_reml.cpp:392:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 392 | for(i=0;i::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const’ at bayesxsrc/bib/statmat.cpp:1158:28, inlined from ‘MCMC::baseline_reml::baseline_reml(MCMC::MCMCoptions*, statmatrix const&, statmatrix const&, statmatrix const&, unsigned int const&, unsigned int const&, unsigned int const&, unsigned int const&, unsigned int const&, MCMC::knotpos const&, MCMC::fieldtype const&, ST::string const&, ST::string const&, ST::string const&, double const&, double const&, MCMC::knotpos const&, int const&, bool const&, double const&)’ at bayesxsrc/mcmc/baseline_reml.cpp:69:35: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘MCMC::baseline_reml::baseline_reml(MCMC::MCMCoptions*, statmatrix const&, statmatrix const&, statmatrix const&, unsigned int const&, unsigned int const&, unsigned int const&, unsigned int const&, unsigned int const&, MCMC::knotpos const&, MCMC::fieldtype const&, ST::string const&, ST::string const&, ST::string const&, double const&, double const&, MCMC::knotpos const&, int const&, bool const&, double const&)’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/distribution.cpp -o bayesxsrc/mcmc/distribution.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/mcmc/distribution.cpp: In member function ‘void MCMC::DISTRIBUTION::substr_linearpred(const datamatrix&, const bool&)’: bayesxsrc/mcmc/distribution.cpp:1643:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1643 | else | ^~~~ bayesxsrc/mcmc/distribution.cpp:1646:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1646 | for(i=0;i::rank(statmatrix&, statmatrix&, int, int, int) const [with T = double]’: bayesxsrc/mcmc/distribution.cpp:6661:20: required from here 6661 | linpred_null.rank(rang_gepoolt,index_gesamt,0,linpred_null.rows()-1,0); // Raenge berechnen | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp:887:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 887 | while(i<=ende-start) | ~^~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp:890:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 890 | while( (i<=ende-start) && (this->get(index(i,0),col)-this->get(index(i-1,0),col))::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ In member function ‘Array2D::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::rank(statmatrix&, statmatrix&, int, int, int) const’ at bayesxsrc/bib/statmat.cpp:897:38, inlined from ‘MCMC::DISTRIBUTION_binomial::compute_auc()’ at bayesxsrc/mcmc/distribution.cpp:6661:20: bayesxsrc/bib/tarray2d.h:218:29: warning: ‘rang_gepoolt.m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ~~~~~^ bayesxsrc/mcmc/distribution.cpp: In member function ‘MCMC::DISTRIBUTION_binomial::compute_auc()’: bayesxsrc/mcmc/distribution.cpp:6660:22: note: ‘rang_gepoolt.m_row’ was declared here 6660 | statmatrix rang_gepoolt(linpred_null.rows(),1); | ^~~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/fullcond.cpp -o bayesxsrc/mcmc/fullcond.o /bin/sh: line 1: gsl-config: command not found In file included from bayesxsrc/bib/tpremat.h:31, from bayesxsrc/bib/tmatrix.h:34, from bayesxsrc/bib/statmat.h:26, from bayesxsrc/mcmc/fullcond.h:27, from bayesxsrc/mcmc/fullcond.cpp:22: In member function ‘Array2D::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/fullcond_merror.cpp -o bayesxsrc/mcmc/fullcond_merror.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/mcmc/fullcond_merror.cpp: In constructor ‘MCMC::fullcond_merror::fullcond_merror(MCMC::MCMCoptions*, MCMC::spline_basis*, MCMC::DISTRIBUTION*, const datamatrix&, const ST::string&, const ST::string&, const ST::string&, const double&, const double&, datamatrix&, const bool&, const int&, const unsigned int&)’: bayesxsrc/mcmc/fullcond_merror.cpp:285:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 285 | for(j=0; j&, unsigned int, unsigned int, MCMC::effecttype)’: bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp:3613:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 3613 | for (k=(*itbeg);k<=(*itend);k++,workindex++) | ~^~~~~~~~~~ In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/mcmc/mcmc_nonpbasis.h:33, from bayesxsrc/mcmc/fullcond_nonp_gaussian.h:27, from bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp:22: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ 2099 | decomp(); | ^~~~~~ bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp:2382:17: required from here 2382 | precenv.solveU(beta,betahelp); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::operator()(unsigned int, unsigned int)’, inlined from ‘MCMC::FULLCOND_nonp_gaussian::FULLCOND_nonp_gaussian(MCMC::MCMCoptions*, MCMC::DISTRIBUTION*, statmatrix const&, statmatrix const&, MCMC::FULLCOND_const*, double const&, double const&, ST::string const&, ST::string const&, ST::string const&, ST::string const&, ST::string const&, unsigned int const&)’ at bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp:1652:6: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘d.m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp: In member function ‘MCMC::FULLCOND_nonp_gaussian::FULLCOND_nonp_gaussian(MCMC::MCMCoptions*, MCMC::DISTRIBUTION*, statmatrix const&, statmatrix const&, MCMC::FULLCOND_const*, double const&, double const&, ST::string const&, ST::string const&, ST::string const&, ST::string const&, ST::string const&, unsigned int const&)’: bayesxsrc/mcmc/fullcond_nonp_gaussian.cpp:1648:16: note: ‘d’ declared here 1648 | datamatrix d(dx.rows(),1); | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp -o bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp: In member function ‘void MCMC::FULLCOND_nonp_gaussian_stepwise::update_gauss()’: bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:1477:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1477 | if(kombimatrix==true) | ^~ bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:1479:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1479 | if(numberofmatrices==3) | ^~ In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/mcmc/mcmc_nonpbasis.h:33, from bayesxsrc/mcmc/fullcond_nonp_gaussian.h:27, from bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.h:26, from bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:22: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:505:41: required from here 505 | precenv_neu.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::decomp() [with T = double]’: bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:980:21: required from here 980 | precenv.decomp(); | ~~~~~~~~~~~~~~^~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ 2369 | *invdiag -= inv(i+k+1,i)*getL(i+k+1,i); | ~~~~^~~~~~~~~ bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.cpp:505:41: required from here 505 | precenv_neu.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ 2099 | decomp(); | ^~~~~~ bayesxsrc/mcmc/kriging2.cpp:900:18: required from here 900 | prec_env.solveU(beta,betahelp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’: bayesxsrc/mcmc/mcmc_nonp.cpp:1550:14: required from here 1550 | prec.solveL(randnorm[b-a],fc_random[b-a]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:987:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 987 | for (j=0;j+i+1<=p;j++) | ~~~~~^~~ bayesxsrc/bib/bandmat.cpp: In instantiation of ‘void symbandmatrix::decomp() [with T = double]’: bayesxsrc/bib/bandmat.cpp:943:5: required from ‘void symbandmatrix::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’ 943 | decomp(); | ^~~~~~ bayesxsrc/mcmc/mcmc_nonp.cpp:1550:14: required from here 1550 | prec.solveL(randnorm[b-a],fc_random[b-a]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:592:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 592 | for (k=0;k::operator()(unsigned int, unsigned int)’, inlined from ‘MCMC::PenaltyMatrix::make_categories2(statmatrix const&, unsigned int const&, unsigned int&, std::vector >&)’ at bayesxsrc/mcmc/mcmc_nonp.cpp:144:16: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ bayesxsrc/mcmc/mcmc_nonp.cpp: In member function ‘MCMC::PenaltyMatrix::make_categories2(statmatrix const&, unsigned int const&, unsigned int&, std::vector >&)’: bayesxsrc/mcmc/mcmc_nonp.cpp:130:19: note: ‘index’ declared here 130 | statmatrix index(moddata.rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/mcmc_nonpbasis.cpp -o bayesxsrc/mcmc/mcmc_nonpbasis.o /bin/sh: line 1: gsl-config: command not found In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/mcmc/mcmc_nonpbasis.h:33, from bayesxsrc/mcmc/mcmc_nonpbasis.cpp:22: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2589:5: required from ‘T envmatrix::getLogDet() [with T = double]’ 2589 | decomp(); | ^~~~~~ bayesxsrc/mcmc/mcmc_nonpbasis.cpp:316:24: required from here 316 | return Kenv.getLogDet(); | ~~~~~~~~~~~~~~^~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k&, const ST::string&, const ST::string&)’: bayesxsrc/mcmc/randomeffect.cpp:100:5: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 100 | int h; | ^ bayesxsrc/mcmc/randomeffect.cpp: In member function ‘void MCMC::FULLCOND_random::update_linpred_diff(datamatrix&, datamatrix&)’: bayesxsrc/mcmc/randomeffect.cpp:1233:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1233 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1249:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1249 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1268:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1268 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp: In member function ‘virtual void MCMC::FULLCOND_random::update_linpred(const bool&)’: bayesxsrc/mcmc/randomeffect.cpp:1292:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1292 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1307:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1307 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1323:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1323 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1345:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1345 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1360:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1360 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp:1374:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1374 | if (*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect.cpp: In member function ‘virtual void MCMC::FULLCOND_random::get_effectmatrix(datamatrix&, std::vector&, unsigned int, unsigned int, MCMC::effecttype)’: bayesxsrc/mcmc/randomeffect.cpp:1443:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1443 | for(j=*itbeg;j<=*itend;j++,workindex++) | ~^~~~~~~~ bayesxsrc/mcmc/randomeffect.cpp:1435:16: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 1435 | unsigned n; | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/randomeffect_stepwise.cpp -o bayesxsrc/mcmc/randomeffect_stepwise.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/mcmc/randomeffect_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_random_stepwise::create_weight(datamatrix&)’: bayesxsrc/mcmc/randomeffect_stepwise.cpp:313:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 313 | if(*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_random_stepwise::update_bootstrap(const bool&)’: bayesxsrc/mcmc/randomeffect_stepwise.cpp:668:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 668 | if(*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_random_stepwise::save_betamean()’: bayesxsrc/mcmc/randomeffect_stepwise.cpp:747:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 747 | if(*itbeg != -1) | ~~~~~~~^~~~~ bayesxsrc/mcmc/randomeffect_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_random_stepwise::update()’: bayesxsrc/mcmc/randomeffect_stepwise.cpp:894:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 894 | if(*itbeg != -1) | ~~~~~~~^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/remlest.cpp -o bayesxsrc/mcmc/remlest.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/mcmc/remlest_multi.cpp -o bayesxsrc/mcmc/remlest_multi.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/mcmc/remlest_multi.cpp: In constructor ‘remlest_multinomial::remlest_multinomial(std::vector&, datamatrix&, const ST::string&, const ST::string&, const int&, const double&, const double&, const double&, const double&, const datamatrix&, const datamatrix&, const bool&, std::ostream*)’: bayesxsrc/mcmc/remlest_multi.cpp:50:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | for(int i=0; i&, datamatrix&, const ST::string&, const ST::string&, const int&, const double&, const double&, const double&, const double&, const datamatrix&, const datamatrix&, const bool&, std::ostream*)’: bayesxsrc/mcmc/remlest_multi2.cpp:50:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 50 | for(int i=0; i&, datamatrix&, const ST::string&, const ST::string&, const int&, const double&, const double&, const double&, const double&, const datamatrix&, const datamatrix&, const bool&, std::ostream*)’: bayesxsrc/mcmc/remlest_multi3.cpp:51:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 51 | for(int i=0; i::decomp2(unsigned int) [with T = double]’: bayesxsrc/mcmc/tvariance2dim.cpp:294:22: required from here 294 | K11.decomp2(row-nrrows+1); | ~~~~~~~~~~~^~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:1141:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1141 | if(start<=bandwidth) | ~~~~~^~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:1223:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1223 | if(kband > k) | ~~~~~~^~~ bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2589:5: required from ‘T envmatrix::getLogDet() [with T = double]’ 2589 | decomp(); | ^~~~~~ bayesxsrc/mcmc/tvariance2dim.cpp:60:27: required from here 60 | detalt = K11.getLogDet(); | ~~~~~~~~~~~~~^~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ 2099 | decomp(); | ^~~~~~ bayesxsrc/psplines/IWLS_pspline.cpp:621:18: required from here 621 | prec_env.solveU(beta,betahelp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const’ at bayesxsrc/bib/statmat.cpp:1158:28, inlined from ‘MCMC::bsplinemat::make_Bspline(bool const&, statmatrix const&, bool const&)’ at bayesxsrc/psplines/bsplinemat.cpp:190:35: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘MCMC::bsplinemat::make_Bspline(bool const&, statmatrix const&, bool const&)’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/psplines/fullcond_pspline_gaussian.cpp -o bayesxsrc/psplines/fullcond_pspline_gaussian.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/psplines/fullcond_pspline_gaussian.cpp: In member function ‘virtual void MCMC::FULLCOND_pspline_gaussian::update()’: bayesxsrc/psplines/fullcond_pspline_gaussian.cpp:477:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 477 | for(i=0;i::mult(const statmatrix&, statmatrix&) const [with T = double]’: bayesxsrc/psplines/fullcond_pspline_gaussian.cpp:358:13: required from here 358 | K.mult(gamma,muy2); | ~~~~~~^~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:1420:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1420 | if (end >= dim) | ~~~~^~~~~~ bayesxsrc/bib/bandmat.cpp:1423:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1423 | for (k = beg; k <= end; k++) | ~~^~~~~~ In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/mcmc/mcmc_nonpbasis.h:33: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ 2099 | decomp(); | ^~~~~~ bayesxsrc/psplines/fullcond_pspline_gaussian.cpp:365:20: required from here 365 | prec_env.solveU(beta,betahelp); // betahelp = P^(-1) * muy | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/psplines/fullcond_pspline_stepwise.cpp -o bayesxsrc/psplines/fullcond_pspline_stepwise.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/psplines/fullcond_pspline_stepwise.cpp: In member function ‘virtual void MCMC::FULLCOND_pspline_stepwise::change_Korder(double)’: bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:1817:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1817 | if((decreasing || increasing) && type==RW2 && spline.var(0)==0) | ^~ bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:1819:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1819 | rankK = nrpar-1; | ^~~~~ bayesxsrc/psplines/fullcond_pspline_stepwise.cpp: In member function ‘void MCMC::FULLCOND_pspline_stepwise::update_gauss()’: bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:2009:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2009 | for(i=0;i::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:986:34: required from here 986 | prec_env.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::decomp() [with T = double]’: bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:1152:22: required from here 1152 | prec_env.decomp(); | ~~~~~~~~~~~~~~~^~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ 2369 | *invdiag -= inv(i+k+1,i)*getL(i+k+1,i); | ~~~~^~~~~~~~~ bayesxsrc/psplines/fullcond_pspline_stepwise.cpp:986:34: required from here 986 | prec_env.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’: bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:1625:18: required from here 1625 | prec.solveL(standnormal,beta); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:987:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 987 | for (j=0;j+i+1<=p;j++) | ~~~~~^~~ bayesxsrc/bib/bandmat.cpp: In instantiation of ‘void symbandmatrix::solve(const statmatrix&, statmatrix&, const unsigned int&, const unsigned int&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:1628:17: required from here 1628 | prec.solve(muy,betahelp,0,0); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:1047:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1047 | for(i=1;i::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:2754:28: required from here 2754 | prec_env.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ 2099 | decomp(); | ^~~~~~ bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:842:20: required from here 842 | prec_env.solveU(proposal,betahelp); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::decomp() [with T = double]’: bayesxsrc/bib/bandmat.cpp:943:5: required from ‘void symbandmatrix::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’ 943 | decomp(); | ^~~~~~ bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:1625:18: required from here 1625 | prec.solveL(standnormal,beta); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:592:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 592 | for (k=0;k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ 2369 | *invdiag -= inv(i+k+1,i)*getL(i+k+1,i); | ~~~~^~~~~~~~~ bayesxsrc/psplines/fullcond_pspline_surf_gaussian.cpp:2754:28: required from here 2754 | prec_env.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::decomp() [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:972:22: required from here 972 | prec_env.decomp(); | ~~~~~~~~~~~~~~~^~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1116:34: required from here 1116 | prec_env.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’: bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1896:16: required from here 1896 | prec.solveL(standnormal,beta); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:987:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 987 | for (j=0;j+i+1<=p;j++) | ~~~~~^~~ bayesxsrc/bib/bandmat.cpp: In instantiation of ‘void symbandmatrix::solve(const statmatrix&, statmatrix&, const unsigned int&, const unsigned int&) [with T = double]’: bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1899:15: required from here 1899 | prec.solve(muy,betahelp,0,0); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:1047:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1047 | for(i=1;i::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ 2369 | *invdiag -= inv(i+k+1,i)*getL(i+k+1,i); | ~~~~^~~~~~~~~ bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1116:34: required from here 1116 | prec_env.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::decomp() [with T = double]’: bayesxsrc/bib/bandmat.cpp:943:5: required from ‘void symbandmatrix::solveL(const datamatrix&, datamatrix&) [with T = double; datamatrix = statmatrix]’ 943 | decomp(); | ^~~~~~ bayesxsrc/psplines/fullcond_pspline_surf_stepwise.cpp:1896:16: required from here 1896 | prec.solveL(standnormal,beta); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:592:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 592 | for (k=0;krankK) | ~~~^~~~~~ In file included from bayesxsrc/bib/tpremat.h:31, from bayesxsrc/bib/tmatrix.h:34, from bayesxsrc/bib/statmat.h:26, from bayesxsrc/mcmc/mcmc.h:27, from bayesxsrc/psplines/mcmc_pspline.h:26, from bayesxsrc/psplines/mcmc_pspline.cpp:22: In member function ‘Array2D::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/psplines/mcmc_pspline_surf.cpp -o bayesxsrc/psplines/mcmc_pspline_surf.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/psplines/mcmc_pspline_surf.cpp: In member function ‘virtual void MCMC::FULLCOND_pspline_surf::update()’: bayesxsrc/psplines/mcmc_pspline_surf.cpp:1000:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1000 | while(firstit != first.end() && end < likep->get_nrobs() && *firstit < en) | ~~~~~~~~~^~~~ bayesxsrc/psplines/mcmc_pspline_surf.cpp:1091:20: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1091 | for(k=0;kFULLCOND_pspline_surf::max) | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/psplines/spline_basis.cpp -o bayesxsrc/psplines/spline_basis.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/psplines/spline_basis.cpp: In member function ‘virtual void MCMC::spline_basis::get_effectmatrix(datamatrix&, std::vector&, unsigned int, unsigned int, MCMC::effecttype)’: bayesxsrc/psplines/spline_basis.cpp:180:12: warning: variable ‘worksplinehelp’ set but not used [-Wunused-but-set-variable] 180 | double * worksplinehelp; | ^~~~~~~~~~~~~~ bayesxsrc/psplines/spline_basis.cpp: In constructor ‘MCMC::spline_basis::spline_basis(MCMC::MCMCoptions*, const datamatrix&, const unsigned int&, const unsigned int&, const MCMC::knotpos&, const MCMC::fieldtype&, const ST::string&, const ST::string&, const ST::string&, const double&, const double&, const bool&, const double&, const double&, const double&, const double&, const int&, const double&)’: bayesxsrc/psplines/spline_basis.cpp:445:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 445 | for(j=1; j::solve(const statmatrix&, statmatrix&, const unsigned int&, const unsigned int&) [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3057:15: required from here 3057 | prec.solve(betaweight,betahelp,0,0); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:1047:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 1047 | for(i=1;i::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3240:28: required from here 3240 | prec_env.inverse_envelope(invprec); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::decomp() [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3258:16: required from here 3258 | XX_env.decomp(); | ~~~~~~~~~~~~~^~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3261:27: required from here 3261 | L(i,j) = XX_env.getL(i,j); | ~~~~~~~~~~~^~~~~ bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::mult(const statmatrix&, statmatrix&) const [with T = double]’: bayesxsrc/psplines/spline_basis.cpp:3264:9: required from here 3264 | K.mult(L.transposed(),help); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:1420:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 1420 | if (end >= dim) | ~~~~^~~~~~ bayesxsrc/bib/bandmat.cpp:1423:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1423 | for (k = beg; k <= end; k++) | ~~^~~~~~ bayesxsrc/bib/bandmat.cpp: In instantiation of ‘void symbandmatrix::decomp() [with T = double]’: bayesxsrc/bib/bandmat.cpp:1037:5: required from ‘void symbandmatrix::solve(const statmatrix&, statmatrix&, const unsigned int&, const unsigned int&) [with T = double]’ 1037 | decomp(); | ^~~~~~ bayesxsrc/psplines/spline_basis.cpp:3057:15: required from here 3057 | prec.solve(betaweight,betahelp,0,0); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/bandmat.cpp:592:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 592 | for (k=0;k::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ In member function ‘envmatrix::operator=(envmatrix const&)’, inlined from ‘envmatrix::operator=(envmatrix const&)’ at bayesxsrc/bib/envmatrix.cpp:331:22, inlined from ‘MCMC::spline_basis::spline_basis(MCMC::MCMCoptions*, MCMC::DISTRIBUTION*, MCMC::FULLCOND_const*, MCMC::fieldtype const&, ST::string const&, unsigned int const&, unsigned int const&, MCMC::knotpos const&, int const&, ST::string const&, ST::string const&, bool const&, double const&, double const&, double const&, double const&, unsigned int const&)’ at bayesxsrc/psplines/spline_basis.cpp:322:25: bayesxsrc/bib/envmatrix.cpp:344:18: warning: ‘D.105208.bandwidth’ may be used uninitialized [-Wmaybe-uninitialized] 344 | bandwidth = em.bandwidth; | ~~~^~~~~~~~~ bayesxsrc/psplines/spline_basis.cpp: In member function ‘MCMC::spline_basis::spline_basis(MCMC::MCMCoptions*, MCMC::DISTRIBUTION*, MCMC::FULLCOND_const*, MCMC::fieldtype const&, ST::string const&, unsigned int const&, unsigned int const&, MCMC::knotpos const&, int const&, ST::string const&, ST::string const&, bool const&, double const&, double const&, double const&, double const&, unsigned int const&)’: bayesxsrc/psplines/spline_basis.cpp:322:25: note: ‘’ declared here 322 | XX_env = envmatdouble(); | ^ In member function ‘envmatrix::operator=(envmatrix const&)’, inlined from ‘envmatrix::operator=(envmatrix const&)’ at bayesxsrc/bib/envmatrix.cpp:331:22, inlined from ‘MCMC::spline_basis::spline_basis(MCMC::MCMCoptions*, MCMC::DISTRIBUTION*, MCMC::FULLCOND_const*, MCMC::fieldtype const&, ST::string const&, unsigned int const&, unsigned int const&, MCMC::knotpos const&, int const&, ST::string const&, ST::string const&, bool const&, double const&, double const&, double const&, double const&, unsigned int const&)’ at bayesxsrc/psplines/spline_basis.cpp:323:27: bayesxsrc/bib/envmatrix.cpp:344:18: warning: ‘D.105209.bandwidth’ may be used uninitialized [-Wmaybe-uninitialized] 344 | bandwidth = em.bandwidth; | ~~~^~~~~~~~~ bayesxsrc/psplines/spline_basis.cpp: In member function ‘MCMC::spline_basis::spline_basis(MCMC::MCMCoptions*, MCMC::DISTRIBUTION*, MCMC::FULLCOND_const*, MCMC::fieldtype const&, ST::string const&, unsigned int const&, unsigned int const&, MCMC::knotpos const&, int const&, ST::string const&, ST::string const&, bool const&, double const&, double const&, double const&, double const&, unsigned int const&)’: bayesxsrc/psplines/spline_basis.cpp:323:27: note: ‘’ declared here 323 | prec_env = envmatdouble(); | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/psplines/spline_basis_surf.cpp -o bayesxsrc/psplines/spline_basis_surf.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/psplines/spline_basis_surf.cpp: In member function ‘virtual void MCMC::spline_basis_surf::outresults()’: bayesxsrc/psplines/spline_basis_surf.cpp:1212:1: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 1212 | else | ^~~~ bayesxsrc/psplines/spline_basis_surf.cpp:1214:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 1214 | outres << "pmean "; | ^~~~~~ bayesxsrc/psplines/spline_basis_surf.cpp:1242:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1242 | if(mapexisting) | ^~ bayesxsrc/psplines/spline_basis_surf.cpp:1244:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1244 | outres << *effitx << " " << *effity << " "; | ^~~~~~ bayesxsrc/psplines/spline_basis_surf.cpp:1603:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1603 | for(i=0;i::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC.cpp -o bayesxsrc/structadd/FC.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC.cpp: In member function ‘void MCMC::FC::compute_autocorr(const ST::string&, unsigned int) const’: bayesxsrc/structadd/FC.cpp:367:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 367 | for(c=0;c::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_hrandom.cpp -o bayesxsrc/structadd/FC_hrandom.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_hrandom.cpp: In member function ‘bool MCMC::FC_hrandom::posteriormode_additive()’: bayesxsrc/structadd/FC_hrandom.cpp:605:8: warning: variable ‘conv2’ set but not used [-Wunused-but-set-variable] 605 | bool conv2 = true; | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_hrandom_variance.cpp -o bayesxsrc/structadd/FC_hrandom_variance.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_hrandom_variance.cpp: In member function ‘virtual void MCMC::FC_hrandom_variance::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_hrandom_variance.cpp:38:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 38 | int f; | ^ bayesxsrc/structadd/FC_hrandom_variance.cpp: In member function ‘virtual void MCMC::FC_hrandom_variance_ssvs::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_hrandom_variance.cpp:221:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 221 | int f; | ^ bayesxsrc/structadd/FC_hrandom_variance.cpp: In member function ‘virtual void MCMC::FC_hrandom_variance_ssvs::update()’: bayesxsrc/structadd/FC_hrandom_variance.cpp:334:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 334 | for (i=0;i&, std::vector&)’: bayesxsrc/structadd/FC_hrandom_variance_vec.cpp:39:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 39 | int f; | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.cpp -o bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.cpp: In member function ‘virtual void MCMC::FC_hrandom_variance_vec_nmig::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.cpp:38:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 38 | int f; | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_linear.cpp -o bayesxsrc/structadd/FC_linear.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_linear.cpp: In member function ‘void MCMC::FC_linear::update_IWLS()’: bayesxsrc/structadd/FC_linear.cpp:219:12: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 219 | double h = 0.0; | ^ bayesxsrc/structadd/FC_linear.cpp: In member function ‘virtual void MCMC::FC_linear::update()’: bayesxsrc/structadd/FC_linear.cpp:374:16: warning: variable ‘logold’ set but not used [-Wunused-but-set-variable] 374 | double logold = 0.0; | ^~~~~~ bayesxsrc/structadd/FC_linear.cpp: In member function ‘void MCMC::FC_linear::create_matrices()’: bayesxsrc/structadd/FC_linear.cpp:615:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 615 | for (i=0;i::solveroot(const statmatrix&, statmatrix&, statmatrix&) [with T = double]’: bayesxsrc/structadd/FC_linear.cpp:226:22: required from here 226 | XWXroot.solveroot(Xtresidual,help,mode); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp:122:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 122 | for (i=0;irows();i++,hrp++,bp++) | ~^~~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp: In instantiation of ‘void statmatrix::solveroot_t(const statmatrix&, statmatrix&) [with T = double]’: bayesxsrc/structadd/FC_linear.cpp:236:24: required from here 236 | XWXroot.solveroot_t(help,proposal); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp:100:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 100 | if (i < this->rows()-1) | ~~^~~~~~~~~~~~~~~~ bayesxsrc/bib/statmat.cpp:103:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 103 | for (j=i+1;jrows();j++,xp++) | ~^~~~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_mult.cpp -o bayesxsrc/structadd/FC_mult.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_mult.cpp: In member function ‘virtual bool MCMC::FC_mult::posteriormode()’: bayesxsrc/structadd/FC_mult.cpp:257:12: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 257 | bool h = FCmulteffect.posteriormode(); | ^ bayesxsrc/structadd/FC_mult.cpp:300:12: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 300 | bool h = FCmulteffect.posteriormode(); | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_shared.cpp -o bayesxsrc/structadd/FC_shared.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_nonp.cpp -o bayesxsrc/structadd/FC_nonp.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_nonp.cpp: In member function ‘virtual void MCMC::FC_nonp::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_nonp.cpp:78:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 78 | int f; | ^ bayesxsrc/structadd/FC_nonp.cpp: In member function ‘void MCMC::FC_nonp::get_linparam()’: bayesxsrc/structadd/FC_nonp.cpp:322:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 322 | for (i=0;i::decomp() [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2099:5: required from ‘void envmatrix::solveU(datamatrix&, const datamatrix&) [with T = double; datamatrix = statmatrix]’ 2099 | decomp(); | ^~~~~~ bayesxsrc/structadd/FC_nonp.cpp:401:30: required from here 401 | designp->precision.solveU(param,paramhelp); // param contains now the proposed | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_nonp_variance.cpp -o bayesxsrc/structadd/FC_nonp_variance.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_nonp_variance.cpp: In member function ‘virtual void MCMC::FC_nonp_variance::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_nonp_variance.cpp:47:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 47 | int f; | ^ bayesxsrc/structadd/FC_nonp_variance.cpp: In member function ‘virtual void MCMC::FC_nonp_variance_varselection::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_nonp_variance.cpp:722:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 722 | int f; | ^ bayesxsrc/structadd/FC_nonp_variance.cpp: In member function ‘MCMC::FC_tensor_omega::update()’: bayesxsrc/structadd/FC_nonp_variance.cpp:1562:12: warning: ‘maxlogprob’ may be used uninitialized [-Wmaybe-uninitialized] 1562 | double maxlogprob; | ^~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_nonp_variance_vec.cpp -o bayesxsrc/structadd/FC_nonp_variance_vec.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_predict.cpp -o bayesxsrc/structadd/FC_predict.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_predict.cpp: In member function ‘virtual void MCMC::FC_predict::outresults(std::ofstream&, std::ofstream&, std::ofstream&, const ST::string&)’: bayesxsrc/structadd/FC_predict.cpp:644:12: warning: variable ‘scalehelp’ set but not used [-Wunused-but-set-variable] 644 | double scalehelp = 0.0; | ^~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_predict_mult.cpp -o bayesxsrc/structadd/FC_predict_mult.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_predict_mult.cpp: In member function ‘void MCMC::FC_predict_mult::outresults_DIC(std::ofstream&, std::ofstream&, std::ofstream&, const ST::string&)’: bayesxsrc/structadd/FC_predict_mult.cpp:296:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 296 | for (j=0;j responsep; | ^~~~~~ bayesxsrc/structadd/FC_predict_mult.cpp:771:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 771 | if (likep[j]->outpredictor) | ^~ bayesxsrc/structadd/FC_predict_mult.cpp:773:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 773 | workmeanmat[j] = workmean; | ^~~~~~~~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_cv.cpp -o bayesxsrc/structadd/FC_cv.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_variance_pen_vector.cpp -o bayesxsrc/structadd/FC_variance_pen_vector.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_variance_pen_vector.cpp: In member function ‘void MCMC::FC_variance_pen_vector::add_variable(datamatrix&, std::vector&, std::vector&)’: bayesxsrc/structadd/FC_variance_pen_vector.cpp:42:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 42 | int f; | ^ bayesxsrc/structadd/FC_variance_pen_vector.cpp: In member function ‘void MCMC::FC_variance_pen_vector_ssvs::add_variable(datamatrix&, std::vector&, std::vector&)’: bayesxsrc/structadd/FC_variance_pen_vector.cpp:658:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 658 | for(int i=0;i, int>::value_type’ {aka ‘int’} [-Wsign-compare] 1715 | for (j=posbeg[i];j<=posend[i];j++) In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/bib/envmatrix_penalty.h:27, from bayesxsrc/structadd/design.h:31, from bayesxsrc/structadd/design.cpp:22: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::decomp() [with T = double]’: bayesxsrc/structadd/design.cpp:36:13: required from here 36 | XWX.decomp(); | ~~~~~~~~~~^~ bayesxsrc/bib/envmatrix.cpp:568:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 568 | k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2517:20: required from ‘statmatrix envmatrix::getL() const [with T = double]’ 2517 | R(i,j) = getL(i,j); | ~~~~^~~~~ bayesxsrc/structadd/design.cpp:37:26: required from here 37 | datamatrix R = XWX.getL(); | ~~~~~~~~^~ bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh::get(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2530:19: required from ‘statmatrix envmatrix::get() const [with T = double]’ 2530 | S(i,j) = get(i,j); | ~~~^~~~~ bayesxsrc/structadd/design.cpp:39:24: required from here 39 | datamatrix Kd = K.get(); | ~~~~~^~ bayesxsrc/bib/envmatrix.cpp:307:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 307 | if(jh::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/design_hrandom.cpp -o bayesxsrc/structadd/design_hrandom.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/design_mrf.cpp -o bayesxsrc/structadd/design_mrf.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/design_mrf.cpp: In member function ‘virtual void MCMC::DESIGN_mrf::init_data(const datamatrix&, const datamatrix&)’: bayesxsrc/structadd/design_mrf.cpp:192:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 192 | for (j=0;j&, std::vector&)’: bayesxsrc/structadd/design_pspline.cpp:66:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 66 | int f; | ^ In file included from bayesxsrc/bib/envmatrix.h:484, from bayesxsrc/bib/envmatrix_penalty.h:27, from bayesxsrc/structadd/design.h:31, from bayesxsrc/structadd/design_pspline.h:28, from bayesxsrc/structadd/design_pspline.cpp:22: bayesxsrc/bib/envmatrix.cpp: In instantiation of ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’: bayesxsrc/structadd/design_pspline.cpp:687:31: required from here 687 | precision.inverse_envelope(precisioninv); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2384:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2384 | if(dim-i+k::getL(const unsigned int&, const unsigned int&) const [with T = double]’: bayesxsrc/bib/envmatrix.cpp:2369:38: required from ‘void envmatrix::inverse_envelope(envmatrix&) [with T = double]’ 2369 | *invdiag -= inv(i+k+1,i)*getL(i+k+1,i); | ~~~~^~~~~~~~~ bayesxsrc/structadd/design_pspline.cpp:687:31: required from here 687 | precision.inverse_envelope(precisioninv); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ bayesxsrc/bib/envmatrix.cpp:2504:8: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2504 | if(jh 0) | ^~ bayesxsrc/structadd/distr.cpp:415:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 415 | optionsp->out(" Number of observations with positive weights: " + | ^~~~~~~~ bayesxsrc/structadd/distr.cpp: In member function ‘virtual bool MCMC::DISTR::posteriormode()’: bayesxsrc/structadd/distr.cpp:827:10: warning: variable ‘h’ set but not used [-Wunused-but-set-variable] 827 | double h = 0.0; | ^ In file included from bayesxsrc/bib/tpremat.h:31, from bayesxsrc/bib/tmatrix.h:34, from bayesxsrc/bib/statmat.h:26, from bayesxsrc/structadd/distr.h:26, from bayesxsrc/structadd/distr.cpp:22: In member function ‘Array2D::operator()(unsigned int, unsigned int)’, inlined from ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’ at bayesxsrc/bib/statmat.cpp:1158:28: bayesxsrc/bib/tarray2d.h:218:24: warning: ‘MEM[(struct Array2D *)&index].m_row’ may be used uninitialized [-Wmaybe-uninitialized] 218 | return m_row[ i ][ j ]; | ^~~~~ In file included from bayesxsrc/bib/statmat.h:495: bayesxsrc/bib/statmat.cpp: In member function ‘statmatrix::quantile(double const&, unsigned int const&) const [clone .isra.0]’: bayesxsrc/bib/statmat.cpp:1153:19: note: ‘index’ declared here 1153 | statmatrix index(this->rows(),1); | ^~~~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/distr_categorical.cpp -o bayesxsrc/structadd/distr_categorical.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/distr_categorical_mult.cpp -o bayesxsrc/structadd/distr_categorical_mult.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/distr_mixture.cpp -o bayesxsrc/structadd/distr_mixture.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/distr_mixture.cpp: In member function ‘virtual void MCMC::DISTR_gaussianmixture::update()’: bayesxsrc/structadd/distr_mixture.cpp:219:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 219 | for (j=0;j, std::vector, std::vector, double*, std::vector*>)’: bayesxsrc/structadd/distr_gamlss_nadja.cpp:16367:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 16367 | for(i=0;i, std::vector, double*)’: bayesxsrc/structadd/distr_gamlss_nadja.cpp:16489:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 16489 | for(i=0;i, std::vector, std::vector, double*, std::vector*>)’: bayesxsrc/structadd/distr_gamlss_nadja.cpp:24880:12: warning: variable ‘expminuslambda’ set but not used [-Wunused-but-set-variable] 24880 | double expminuslambda; | ^~~~~~~~~~~~~~ bayesxsrc/structadd/distr_gamlss_nadja.cpp: In member function ‘virtual void MCMC::DISTR_gaussiancopula_binary_dagum_latent::compute_iwls_wweightschange_weightsone(double*, double*, double*, double*, double&, const bool&)’: bayesxsrc/structadd/distr_gamlss_nadja.cpp:26984:10: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 26984 | double u; | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/distr_gamlss_copula.cpp -o bayesxsrc/structadd/distr_gamlss_copula.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/distr_zeroadjusted.cpp -o bayesxsrc/structadd/distr_zeroadjusted.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/mcmcsim.cpp -o bayesxsrc/structadd/mcmcsim.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/mcmcsim.cpp: In member function ‘bool MCMC::MCMCsim::simulate(ST::string&, const int&, const bool&, const bool&)’: bayesxsrc/structadd/mcmcsim.cpp:214:10: warning: variable ‘c’ set but not used [-Wunused-but-set-variable] 214 | bool c = false; | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/model_parameters.cpp -o bayesxsrc/structadd/model_parameters.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/superbayesreg.cpp -o bayesxsrc/structadd/superbayesreg.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/superbayesreg.cpp: In member function ‘virtual int superbayesreg::parse(const ST::string&)’: bayesxsrc/structadd/superbayesreg.cpp:1639:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 1639 | int u = 0; | ^ bayesxsrc/structadd/superbayesreg.cpp: In member function ‘bool superbayesreg::create_distribution()’: bayesxsrc/structadd/superbayesreg.cpp:2483:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2483 | for(i=0;i::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 3814 | if (distr_dirichlets.size() == nrc) | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ bayesxsrc/structadd/superbayesreg.cpp:5702:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5702 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5734 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5771 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5800 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5828 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5856 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5892 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5935 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5945 | for(lengi=0;lengi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5949 | for(lengi=0;lengi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5984 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6014 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6044 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6072 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6100 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6130 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6162 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6204 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6242 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6272 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6302 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6331 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6360 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6388 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6418 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6450 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6492 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6527 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6555 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6583 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6611 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6639 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6667 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6697 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 6738 | for(coi=0;coi::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9424 | for(j=0; j&, std::vector&)’: bayesxsrc/structadd/design_kriging.cpp:90:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 90 | int f; | ^ bayesxsrc/structadd/design_kriging.cpp: In member function ‘void MCMC::DESIGN_kriging::compute_knots(const std::vector >&, const std::vector >&, unsigned int, double, double, std::vector >&, std::vector >&)’: bayesxsrc/structadd/design_kriging.cpp:482:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 482 | while(covcritnew&, std::vector&)’: bayesxsrc/structadd/design_userdefined.cpp:83:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 83 | int f; | ^ bayesxsrc/structadd/design_userdefined.cpp: In member function ‘virtual void MCMC::DESIGN_userdefined_tensor::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/design_userdefined.cpp:734:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 734 | int f; | ^ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_predictive_check.cpp -o bayesxsrc/structadd/FC_predictive_check.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_predict_predictor.cpp -o bayesxsrc/structadd/FC_predict_predictor.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/structadd/FC_merror.cpp -o bayesxsrc/structadd/FC_merror.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/structadd/FC_merror.cpp: In member function ‘virtual void MCMC::FC_merror::read_options(std::vector&, std::vector&)’: bayesxsrc/structadd/FC_merror.cpp:40:7: warning: variable ‘f’ set but not used [-Wunused-but-set-variable] 40 | int f; | ^ bayesxsrc/structadd/FC_merror.cpp: In constructor ‘MCMC::FC_merror::FC_merror(MCMC::GENERAL_OPTIONS*, const ST::string&, const ST::string&, std::vector&, std::vector&, datamatrix&, datamatrix&, datamatrix&, MCMC::FC_nonp*)’: bayesxsrc/structadd/FC_merror.cpp:195:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} [-Wsign-compare] 195 | for (k=FCp->designp->posbeg[j];k<=FCp->designp->posend[j];k++,workindex++) `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/main.cpp -o bayesxsrc/main.o /bin/sh: line 1: gsl-config: command not found bayesxsrc/main.cpp: In function ‘int main(int, char**)’: bayesxsrc/main.cpp:35:9: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable] 35 | char *ptr; | ^~~ `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/samson/multgaussian.cpp -o bayesxsrc/samson/multgaussian.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/adaptiv/fullcond_adaptiv.cpp -o bayesxsrc/adaptiv/fullcond_adaptiv.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` -I"/usr/include/R" -DNDEBUG -I/usr/local/include -Ibayesxsrc/. -I"bayesxsrc/bib" -I"bayesxsrc/alex" -I"bayesxsrc/adaptiv" -I"bayesxsrc/andrea" -I"bayesxsrc/dag" -I"bayesxsrc/graph" -I"bayesxsrc/mcmc" -I"bayesxsrc/psplines" -I"bayesxsrc/samson" -I"bayesxsrc/leyre" -I"bayesxsrc/structadd" `gsl-config --cflags` -D__BUILDING_GNU -D__BUILDING_LINUX -DTEMPL_INCL_DEF -D_MSC_VER2 -DNO_TEMPLATE_FRIENDS -DINCLUDE_REML -DINCLUDE_MCMC -DBUILD_FOR_BAYESXSRC -fpic `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` -c bayesxsrc/alex/mixture.cpp -o bayesxsrc/alex/mixture.o /bin/sh: line 1: gsl-config: command not found `"/usr/lib64/R/bin/R" CMD config CXX14` `"/usr/lib64/R/bin/R" CMD config CXX14STD` `"/usr/lib64/R/bin/R" CMD config CXX14FLAGS` bayesxsrc/andrea/baseline.o bayesxsrc/andrea/cox.o bayesxsrc/andrea/IWLS_baseline.o bayesxsrc/andrea/multibaseline.o bayesxsrc/andrea/multistate.o bayesxsrc/bib/Random.o bayesxsrc/bib/adminparse_gnu.o bayesxsrc/bib/bandmat.o bayesxsrc/bib/bandmat_penalty.o bayesxsrc/bib/bayesreg.o bayesxsrc/bib/bayesreg2.o bayesxsrc/bib/bayesreg3.o bayesxsrc/bib/clstring.o bayesxsrc/bib/command.o bayesxsrc/bib/data.o bayesxsrc/bib/dataobj.o bayesxsrc/bib/envmatrix.o bayesxsrc/bib/envmatrix_penalty.o bayesxsrc/bib/graph.o bayesxsrc/bib/map.o bayesxsrc/bib/mapobject.o bayesxsrc/bib/model.o bayesxsrc/bib/model_remlreg.o bayesxsrc/bib/model_stepwise.o bayesxsrc/bib/option.o bayesxsrc/bib/realobs.o bayesxsrc/bib/realvar.o bayesxsrc/bib/remlreg.o bayesxsrc/bib/sparsemat.o bayesxsrc/bib/statmat.o bayesxsrc/bib/statmat_penalty.o bayesxsrc/bib/statobj.o bayesxsrc/bib/stepwisereg.o bayesxsrc/bib/use.o bayesxsrc/bib/vectorn.o bayesxsrc/dag/adjacency.o bayesxsrc/dag/dagobject.o bayesxsrc/dag/fullcond_dag.o bayesxsrc/dag/fullcond_dag_d.o bayesxsrc/dag/fullcond_dag_ia.o bayesxsrc/dag/fullcond_dag_ia_mixed.o bayesxsrc/dag/fullcond_rj.o bayesxsrc/dag/fullcond_rj_int.o bayesxsrc/dag/fullcond_rj_mix.o bayesxsrc/dag/func_dag.o bayesxsrc/dag/ia.o bayesxsrc/dag/ia_mixed.o bayesxsrc/leyre/nbinomial.o bayesxsrc/leyre/zip.o bayesxsrc/mcmc/baseline_reml.o bayesxsrc/mcmc/distribution.o bayesxsrc/mcmc/fullcond.o bayesxsrc/mcmc/fullcond_merror.o bayesxsrc/mcmc/fullcond_mult.o bayesxsrc/mcmc/fullcond_nonp_gaussian.o bayesxsrc/mcmc/fullcond_nonp_gaussian_stepwise.o bayesxsrc/mcmc/gaussian_heteroskedastic.o bayesxsrc/mcmc/hrandom.o bayesxsrc/mcmc/kriging2.o bayesxsrc/mcmc/kriging.o bayesxsrc/mcmc/mcmc.o bayesxsrc/mcmc/mcmc_const.o bayesxsrc/mcmc/mcmc_const_stepwise.o bayesxsrc/mcmc/mcmc_nonp.o bayesxsrc/mcmc/mcmc_nonpbasis.o bayesxsrc/mcmc/mcmcsimul.o bayesxsrc/mcmc/mcmcsimul2.o bayesxsrc/mcmc/mcmcsimul2_multi.o bayesxsrc/mcmc/randomeffect.o bayesxsrc/mcmc/randomeffect_stepwise.o bayesxsrc/mcmc/remlest.o bayesxsrc/mcmc/remlest_multi.o bayesxsrc/mcmc/remlest_multi2.o bayesxsrc/mcmc/remlest_multi3.o bayesxsrc/mcmc/tvariance.o bayesxsrc/mcmc/tvariance2dim.o bayesxsrc/mcmc/variance_nonp.o bayesxsrc/mcmc/variance_nonp_vector.o bayesxsrc/mcmc/variance_nonp_vector_nigmix.o bayesxsrc/psplines/IWLS_pspline.o bayesxsrc/psplines/bsplinemat.o bayesxsrc/psplines/fullcond_pspline_gaussian.o bayesxsrc/psplines/fullcond_pspline_stepwise.o bayesxsrc/psplines/fullcond_pspline_surf_gaussian.o bayesxsrc/psplines/fullcond_pspline_surf_stepwise.o bayesxsrc/psplines/mcmc_pspline.o bayesxsrc/psplines/mcmc_pspline_surf.o bayesxsrc/psplines/spline_basis.o bayesxsrc/psplines/spline_basis_surf.o bayesxsrc/structadd/FC.o bayesxsrc/structadd/FC_hrandom.o bayesxsrc/structadd/FC_hrandom_variance.o bayesxsrc/structadd/FC_hrandom_variance_vec.o bayesxsrc/structadd/FC_hrandom_variance_vec_nmig.o bayesxsrc/structadd/FC_linear.o bayesxsrc/structadd/FC_mult.o bayesxsrc/structadd/FC_shared.o bayesxsrc/structadd/FC_nonp.o bayesxsrc/structadd/FC_nonp_variance.o bayesxsrc/structadd/FC_nonp_variance_vec.o bayesxsrc/structadd/FC_predict.o bayesxsrc/structadd/FC_predict_mult.o bayesxsrc/structadd/FC_cv.o bayesxsrc/structadd/FC_variance_pen_vector.o bayesxsrc/structadd/GENERAL_OPTIONS.o bayesxsrc/structadd/MASTER_obj.o bayesxsrc/structadd/design.o bayesxsrc/structadd/design_hrandom.o bayesxsrc/structadd/design_mrf.o bayesxsrc/structadd/design_pspline.o bayesxsrc/structadd/distr.o bayesxsrc/structadd/distr_categorical.o bayesxsrc/structadd/distr_categorical_mult.o bayesxsrc/structadd/distr_mixture.o bayesxsrc/structadd/distr_gamlss.o bayesxsrc/structadd/distr_gamlss_nadja.o bayesxsrc/structadd/distr_gamlss_copula.o bayesxsrc/structadd/distr_zeroadjusted.o bayesxsrc/structadd/mcmcsim.o bayesxsrc/structadd/model_parameters.o bayesxsrc/structadd/superbayesreg.o bayesxsrc/structadd/design_kriging.o bayesxsrc/structadd/design_userdefined.o bayesxsrc/structadd/FC_predictive_check.o bayesxsrc/structadd/FC_predict_predictor.o bayesxsrc/structadd/FC_merror.o bayesxsrc/main.o bayesxsrc/samson/multgaussian.o bayesxsrc/adaptiv/fullcond_adaptiv.o bayesxsrc/alex/mixture.o -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 `gsl-config --libs` -o BayesX /bin/sh: line 1: gsl-config: command not found installing via 'install.libs.R' to /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT/usr/local/lib/R/library/00LOCK-BayesXsrc/00new/BayesXsrc ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘BayesXsrc’ finding HTML links ... done run.bayesx html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesXsrc) + test -d BayesXsrc/src + cd BayesXsrc/src + rm -f '*.o' '*.so' + rm -f /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT/usr/local/lib/R/library/R.css + find /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT/usr/local/lib/R/library -type f -exec sed -i s@/builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT@@g '{}' ';' + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 3.0.6-1.fc42.copr8925150 --unique-debug-suffix -3.0.6-1.fc42.copr8925150.x86_64 --unique-debug-src-base R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BayesXsrc find-debuginfo: starting Extracting debug info from 1 files DWARF-compressing 1 files sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT Handler jar skipped: jar handler requires $SOURCE_DATE_EPOCH to be set Handler gzip skipped: gzip handler requires $SOURCE_DATE_EPOCH to be set Handler zip skipped: zip handler requires $SOURCE_DATE_EPOCH to be set Scanned 37 directories and 293 files, processed 3 inodes, 0 modified (0 replaced + 0 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/SPECPARTS/rpm-debuginfo.specpart Processing files: R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.x86_64 Provides: R-CRAN-BayesXsrc = 3.0.6-1.fc42.copr8925150 R-CRAN-BayesXsrc(x86-64) = 3.0.6-1.fc42.copr8925150 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: R-CRAN-BayesXsrc-debugsource-3.0.6-1.fc42.copr8925150.x86_64 Provides: R-CRAN-BayesXsrc-debugsource = 3.0.6-1.fc42.copr8925150 R-CRAN-BayesXsrc-debugsource(x86-64) = 3.0.6-1.fc42.copr8925150 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-CRAN-BayesXsrc-debuginfo-3.0.6-1.fc42.copr8925150.x86_64 Provides: R-CRAN-BayesXsrc-debuginfo = 3.0.6-1.fc42.copr8925150 R-CRAN-BayesXsrc-debuginfo(x86-64) = 3.0.6-1.fc42.copr8925150 debuginfo(build-id) = 1a2335e465e6b72be4759c0eb76042ec268bfd85 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-CRAN-BayesXsrc-debugsource(x86-64) = 3.0.6-1.fc42.copr8925150 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build/BUILDROOT Wrote: /builddir/build/RPMS/R-CRAN-BayesXsrc-debugsource-3.0.6-1.fc42.copr8925150.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.x86_64.rpm Wrote: /builddir/build/RPMS/R-CRAN-BayesXsrc-debuginfo-3.0.6-1.fc42.copr8925150.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.DbnNjt + umask 022 + cd /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + test -d /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + rm -rf /builddir/build/BUILD/R-CRAN-BayesXsrc-3.0.6-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: %source_date_epoch_from_changelog is set, but %changelog has no entries to take a date from Finish: rpmbuild R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm Finish: build phase for R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-42-x86_64-1745099881.109336/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/R-CRAN-BayesXsrc-3.0.6-1.fc42.copr8925150.src.rpm) Config(child) 8 minutes 59 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "R-CRAN-BayesXsrc-debugsource", "epoch": null, "version": "3.0.6", "release": "1.fc42.copr8925150", "arch": "x86_64" }, { "name": "R-CRAN-BayesXsrc-debuginfo", "epoch": null, "version": "3.0.6", "release": "1.fc42.copr8925150", "arch": "x86_64" }, { "name": "R-CRAN-BayesXsrc", "epoch": null, "version": "3.0.6", "release": "1.fc42.copr8925150", "arch": "x86_64" }, { "name": "R-CRAN-BayesXsrc", "epoch": null, "version": "3.0.6", "release": "1.fc42.copr8925150", "arch": "src" } ] } RPMResults finished