cal_total_length {dendsort} | R Documentation |
Calculate the total length of lines to draw the dendrogram
Description
cal_total_length
is a code modified from plot.dendrogram()
to calculate the total length of lines to draw a dendrogram. This
function was developed to evaluate the use of ink for visualization.
Usage
cal_total_length(x)
Arguments
x |
A dendrogram object. |
Value
output The total length.
Examples
#generate sample data
set.seed(1234); par(mar=c(0,0,0,0))
x <- rnorm(10, mean=rep(1:5, each=2), sd=0.4)
y <- rnorm(10, mean=rep(c(1,2), each=5), sd=0.4)
dataFrame <- data.frame(x=x, y=y, row.names=c(1:10))
#calculate Euclidian distance
distxy <- dist(dataFrame)
#hierachical clustering "complete" linkage by default
hc <- hclust(distxy)
total_length <- cal_total_length(as.dendrogram(hc))
[Package dendsort version 0.3.4 Index]