Mock Version: 1.2.10
ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'], chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-25121/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135user='mockbuild'timeout=0logger=<mockbuild.trace_decorator.getLog object at 0x7f8ad98049d0>uid=1001)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target x86_64 --nodeps /builddir/build/SPECS/rdkit.spec'] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False
sh: pg_config: command not found
warning: Could not canonicalize hostname: copr-builder-417527666
Building target platforms: x86_64
Building for target x86_64
Wrote: /builddir/build/SRPMS/rdkit-2015.03.1-2.el7.centos.src.rpm
Child return code was: 0
LEAVE do --> 

ENTER do(['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps  /builddir/build/SPECS/rdkit.spec '], chrootPath='/var/lib/mock/epel-7-x86_64-mockbuilder-25121/root'shell=FalseprintOutput=Falseenv={'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'}gid=135user='mockbuild'timeout=0logger=<mockbuild.trace_decorator.getLog object at 0x7f8ad98049d0>uid=1001)
Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target x86_64 --nodeps  /builddir/build/SPECS/rdkit.spec '] with env {'LANG': 'en_US.UTF-8', 'TERM': 'vt100', 'SHELL': '/bin/bash', 'PROMPT_COMMAND': 'printf "\x1b]0;<mock-chroot>\x07<mock-chroot>"', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'HOME': '/builddir', 'HOSTNAME': 'mock'} and shell False
Building target platforms: x86_64
Building for target x86_64
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.QW9isL
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf rdkit-Release_2015_03_1
+ /usr/bin/gzip -dc /builddir/build/SOURCES/Release_2015_03_1.tar.gz
+ /usr/bin/tar -xf -
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd rdkit-Release_2015_03_1
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ echo 'Patch #2 (rdkit-2014.09-do_not_install_sping.patch):'
Patch #2 (rdkit-2014.09-do_not_install_sping.patch):
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2014.09-do_not_install_sping.patch
+ /usr/bin/patch -p1 --fuzz=0
patching file CMakeLists.txt
Hunk #1 succeeded at 153 (offset 4 lines).
Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):
+ echo 'Patch #4 (rdkit-2014.09-fix_cmake_files_path.patch):'
+ /usr/bin/patch -p1 --fuzz=0
+ /usr/bin/cat /builddir/build/SOURCES/rdkit-2014.09-fix_cmake_files_path.patch
patching file CMakeLists.txt
Hunk #1 succeeded at 82 (offset 1 line).
Hunk #2 succeeded at 96 (offset 1 line).
+ rm -rf rdkit/sping
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.drYoEK
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2015_03_1
+ CFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ export CFLAGS
+ CXXFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic'
+ export CXXFLAGS
+ FFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FFLAGS
+ FCFLAGS='-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic -I/usr/lib64/gfortran/modules'
+ export FCFLAGS
+ LDFLAGS='-Wl,-z,relro '
+ export LDFLAGS
+ /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -D RDK_INSTALL_INTREE=OFF -D CMAKE_BUILD_TYPE=RelWithDebInfo -D RDK_BUILD_INCHI_SUPPORT:BOOL=ON -D RDK_INSTALL_STATIC_LIBS:BOOL=OFF -D RDK_THREADSAFE_SSS:BOOL=ON .
-- The C compiler identification is GNU 4.8.3
-- The CXX compiler identification is GNU 4.8.3
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found PythonInterp: /usr/bin/python (found version "2.7.5") 
-- Found PythonLibs: /usr/lib64/libpython2.7.so (found version "2.7.5") 
-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   python
Python Install directory /usr/lib64/python2.7/site-packages
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE  
-- Found INCHI: /usr/lib64/libinchi.so  
-- Boost version: 1.53.0
-- Found the following Boost libraries:
--   regex
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_RELEASE
    CMAKE_Fortran_FLAGS_RELEASE
    INCLUDE_INSTALL_DIR
    LIB_INSTALL_DIR
    RDK_THREADSAFE_SSS
    SHARE_INSTALL_PREFIX
    SYSCONF_INSTALL_DIR
-- Build files have been written to: /builddir/build/BUILD/rdkit-Release_2015_03_1
+ make -j2
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2015_03_1 -B/builddir/build/BUILD/rdkit-Release_2015_03_1 --check-build-system CMakeFiles/Makefile.cmake 0
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make -f CMakeFiles/Makefile2 all
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libCatalogs.so.1.2015.03.1 ../../lib/libCatalogs.so.1 ../../lib/libCatalogs.so
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Linking CXX executable testMatCalc
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMetricMatrixCalc_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp:14:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
Linking CXX shared module ../../../rdkit/rdBase.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdBase.so -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
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Scanning dependencies of target SimDivPickers
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/DistPicker.cpp
Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMetricMatrixCalc.so -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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Scanning dependencies of target Clustering
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh && /usr/bin/c++   -DClustering_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/Clustering.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/MaxMinPicker.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/Clustering.cpp:17:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 10%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers && /usr/bin/c++   -DRDK_64BIT_BUILD -DSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/HierarchicalClusterPicker.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/Clustering.cpp: In function 'PyObject* Clustering_MurtaghCluster(boost::python::api::object, int, int, int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/Clustering.cpp:81:63: warning: 'dataContig' may be used uninitialized in this function [-Wmaybe-uninitialized]
   clusterit((real *)dataContig->data,nPts,sz,option,ia,ib,crit);
                                                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/Clustering.cpp: In function 'PyObject* Clustering_MurtaghDistCluster(boost::python::api::object, int, int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/Clustering.cpp:134:64: warning: 'dataContig' may be used uninitialized in this function [-Wmaybe-uninitialized]
   distclusterit((real *)dataContig->data,nPts,option,ia,ib,crit);
                                                                ^
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In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
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 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1 ../../lib/libRDGeometryLib.so
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make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 76
[ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/MaxMinPicker.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /usr/include/numpy/oldnumeric.h:1,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:16:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/MaxMinPicker.cpp: In function 'RDKit::INT_VECT RDPickers::LazyVectorMaxMinPicks(RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int, bool)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/MaxMinPicker.cpp:153:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(unsigned int i=0;i<poolSize;++i){
                            ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/SparseIntVect.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /usr/include/numpy/oldnumeric.h:1,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp:16:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 15%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdSimDivPickers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /usr/include/numpy/oldnumeric.h:1,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp:13:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdSimDivPickers.so -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libSimDivPickers.so.1.2015.03.1 ../../../lib/libhc.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
Scanning dependencies of target rdInfoTheory
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[ 15%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdInfoTheory_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp:14:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 60
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/wrap_SparseBV.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 71
[ 17%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdInfoTheory_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp:15:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 17%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 17%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdInfoTheory_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /usr/include/numpy/oldnumeric.h:1,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp:12:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdInfoTheory.so -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libInfoTheory.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data && /usr/bin/c++   -DRDK_64BIT_BUILD -DcQuantize_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data/cQuantize.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 17%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/wrap_BitOps.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /usr/include/numpy/oldnumeric.h:1,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data/cQuantize.cpp:13:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,cQuantize.so -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libInfoTheory.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DcDataStructs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/wrap_Utils.cpp
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
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Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/testGrid.cpp
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testGrid.dir/testGrid.cpp.o  -o testGrid -rdynamic ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Linking CXX executable testTransforms
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ROMol.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ROMol.cpp: In member function 'void RDKit::ROMol::initFromOther(const RDKit::ROMol&, bool, int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ROMol.cpp:84:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if(confId<0 || (*ci)->getId()==confId){
                                        ^
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RWMol.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RWMol.cpp: In member function 'void RDKit::RWMol::removeAtom(RDKit::Atom*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RWMol.cpp:194:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if((*bsi)==idx){
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RWMol.cpp:197:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         } else if((*bsi)>idx){
                          ^
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[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/QueryOps.cpp
Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdGeometry.so -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
Scanning dependencies of target Alignment
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 22%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment && /usr/bin/c++   -DAlignment_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/AlignPoints.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 37
[ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolPickler.cpp
Linking CXX shared library ../../../lib/libAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libAlignment.so.1 -o ../../../lib/libAlignment.so.1.2015.03.1 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libAlignment.so.1.2015.03.1 ../../../lib/libAlignment.so.1 ../../../lib/libAlignment.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target Optimizer
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer && /usr/bin/c++   -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/BFGSOpt.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 24%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer && /usr/bin/c++   -DOptimizer_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/LinearSearch.cpp
Linking CXX shared library ../../../lib/libOptimizer.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libOptimizer.so.1 -o ../../../lib/libOptimizer.so.1.2015.03.1 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libOptimizer.so.1.2015.03.1 ../../../lib/libOptimizer.so.1 ../../../lib/libOptimizer.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target testAlignment
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/testAlignment.cpp
Linking CXX executable testAlignment
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testAlignment.dir/testAlignment.cpp.o  -o testAlignment -rdynamic ../../../lib/libAlignment.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
Scanning dependencies of target rdAlignment
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[ 25%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdAlignment_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap/rdAlignment.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap/rdAlignment.cpp:14:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Canon.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Canon.cpp: In function 'void RDKit::Canon::dfsFindCycles(RDKit::ROMol&, int, int, std::vector<RDKit::Canon::AtomColors>&, const UINT_VECT&, RDKit::INT_VECT&, RDKit::VECT_INT_VECT&, const boost::dynamic_bitset<>*, const std::vector<std::basic_string<char> >*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Canon.cpp:520:13: warning: unused variable 'otherAtom' [-Wunused-variable]
       Atom *otherAtom=mol.getAtomWithIdx(possibleIdx);
             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Canon.cpp: In function 'void RDKit::Canon::dfsBuildStack(RDKit::ROMol&, int, int, std::vector<RDKit::Canon::AtomColors>&, RDKit::VECT_INT_VECT&, const UINT_VECT&, RDKit::INT_VECT&, RDKit::Canon::MolStack&, RDKit::INT_VECT&, RDKit::INT_VECT&, RDKit::VECT_INT_VECT&, std::vector<std::list<int> >&, const boost::dynamic_bitset<>*, const std::vector<std::basic_string<char> >*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Canon.cpp:689:20: warning: unused variable 'lowestRingIdx' [-Wunused-variable]
       unsigned int lowestRingIdx;
                    ^
Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdAlignment.so -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libAlignment.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
Scanning dependencies of target testOptimizer
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[ 25%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/testOptimizer.cpp
Linking CXX executable testOptimizer
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o  -o testOptimizer -rdynamic ../../../lib/libOptimizer.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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Scanning dependencies of target ForceField
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/BondIterators.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/BondStretch.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/Nonbonded.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Aromaticity.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Aromaticity.cpp: In function 'bool {anonymous}::isAtomCandForArom(const RDKit::Atom*, {anonymous}::ElectronDonorType)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Aromaticity.cpp:458:98: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                                                                            at->getFormalCharge()))){
                                                                                                  ^
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/TorsionAngle.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Kekulize.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/DistanceConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDiscriminators.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/AngleConstraint.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ConjugHybrid.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/AngleBend.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Chirality.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/BondStretch.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Chirality.cpp:13:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:34:7: warning:   when initialized here [-Wreorder]
       bondholder() : bondType(Bond::UNSPECIFIED),
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, RDKit::Bond::BondStereo, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:37:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,Bond::BondStereo bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, unsigned int, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:42:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,unsigned int bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In member function 'unsigned int RDKit::Canon::AtomCompareFunctor::getAtomRingNbrCode(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:220:21: warning: unused variable 'at' [-Wunused-variable]
         const Atom *at=dp_atoms[i].atom;
                     ^
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RDKitBase.h:20:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Chirality.cpp:11:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Chirality.cpp: In function 'std::pair<bool, bool> RDKit::Chirality::isAtomPotentialChiralCenter(const RDKit::Atom*, const RDKit::ROMol&, const UINT_VECT&, RDKit::Chirality::INT_PAIR_VECT&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Chirality.cpp:509:77: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           CHECK_INVARIANT(ranks[otherIdx]<static_cast<int>(mol.getNumAtoms()),
                                                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:114:46: note: in definition of macro 'CHECK_INVARIANT'
 #define CHECK_INVARIANT( expr, mess ) if ( !(expr) ) {\
                                              ^
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[ 32%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/StretchBend.cpp
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[ 32%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RingInfo.cpp
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[ 32%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/OopBend.cpp
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[ 33%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Conformer.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 28
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/TorsionAngle.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Renumber.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/Nonbonded.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 34%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DGraphMol_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.cpp:12:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:34:7: warning:   when initialized here [-Wreorder]
       bondholder() : bondType(Bond::UNSPECIFIED),
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, RDKit::Bond::BondStereo, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:37:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,Bond::BondStereo bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, unsigned int, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:42:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,unsigned int bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In member function 'unsigned int RDKit::Canon::AtomCompareFunctor::getAtomRingNbrCode(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:220:21: warning: unused variable 'at' [-Wunused-variable]
         const Atom *at=dp_atoms[i].atom;
                     ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/DistanceConstraint.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In function 'void RDKit::Canon::RefinePartitions(const RDKit::ROMol&, RDKit::Canon::canon_atom*, CompareFunc, int, int*, int*, int&, int*, int*, char*) [with CompareFunc = RDKit::Canon::AtomCompareFunctor]':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:574:11: warning: 'symclass' may be used uninitialized in this function [-Wmaybe-uninitialized]
           atoms[index].index = symclass;
           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In function 'void RDKit::Canon::RefinePartitions(const RDKit::ROMol&, RDKit::Canon::canon_atom*, CompareFunc, int, int*, int*, int&, int*, int*, char*) [with CompareFunc = RDKit::Canon::SpecialSymmetryAtomCompareFunctor]':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:574:11: warning: 'symclass' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In function 'void RDKit::Canon::RefinePartitions(const RDKit::ROMol&, RDKit::Canon::canon_atom*, CompareFunc, int, int*, int*, int&, int*, int*, char*) [with CompareFunc = RDKit::Canon::ChiralAtomCompareFunctor]':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:574:11: warning: 'symclass' may be used uninitialized in this function [-Wmaybe-uninitialized]
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In function 'void RDKit::Canon::RefinePartitions(const RDKit::ROMol&, RDKit::Canon::canon_atom*, CompareFunc, int, int*, int*, int&, int*, int*, char*) [with CompareFunc = RDKit::Canon::SpecialChiralityAtomCompareFunctor]':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:574:11: warning: 'symclass' may be used uninitialized in this function [-Wmaybe-uninitialized]
Linking CXX shared library ../../lib/libGraphMol.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libGraphMol.so.1 -o ../../lib/libGraphMol.so.1.2015.03.1 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libGraphMol.so.1 ../../lib/libGraphMol.so
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Scanning dependencies of target SubstructMatch
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -DSubstructMatch_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/SubstructUtils.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/TorsionConstraint.cpp
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Linking CXX shared library ../../../lib/libSubstructMatch.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libSubstructMatch.so.1 -o ../../../lib/libSubstructMatch.so.1.2015.03.1 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1 ../../../lib/libSubstructMatch.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor && /usr/bin/c++   -DDepictor_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/RDDepictor.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/c++   -DForceField_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/Params.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor && /usr/bin/c++   -DDepictor_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/EmbeddedFrag.cpp
Linking CXX shared library ../../lib/libForceField.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libForceField.so.1 -o ../../lib/libForceField.so.1.2015.03.1 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libOptimizer.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libForceField.so.1.2015.03.1 ../../lib/libForceField.so.1 ../../lib/libForceField.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/SmilesParse.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor && /usr/bin/c++   -DDepictor_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/DepictUtils.cpp
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Linking CXX shared library ../../../lib/libDepictor.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libDepictor.so.1 -o ../../../lib/libDepictor.so.1.2015.03.1 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libDepictor.so.1 ../../../lib/libDepictor.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
Scanning dependencies of target PartialCharges
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/SmilesWrite.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/SmilesWrite.cpp:15:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:34:7: warning:   when initialized here [-Wreorder]
       bondholder() : bondType(Bond::UNSPECIFIED),
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, RDKit::Bond::BondStereo, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:37:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,Bond::BondStereo bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, unsigned int, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:42:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,unsigned int bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In member function 'unsigned int RDKit::Canon::AtomCompareFunctor::getAtomRingNbrCode(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:220:21: warning: unused variable 'at' [-Wunused-variable]
         const Atom *at=dp_atoms[i].atom;
                     ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/SmilesWrite.cpp: In function 'std::string RDKit::MolFragmentToSmiles(const RDKit::ROMol&, const std::vector<int>&, const std::vector<int>*, const std::vector<std::basic_string<char> >*, const std::vector<std::basic_string<char> >*, bool, bool, int, bool, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/SmilesWrite.cpp:594:60: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if( colors[i] == Canon::WHITE_NODE && ranks[i] < nextRank ){
                                                            ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 48
[ 39%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges && /usr/bin/c++   -DPartialCharges_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/GasteigerParams.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DSmilesParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/SmartsWrite.cpp
Linking CXX shared library ../../../lib/libPartialCharges.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libPartialCharges.so.1 -o ../../../lib/libPartialCharges.so.1.2015.03.1 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libPartialCharges.so.1 ../../../lib/libPartialCharges.so
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Scanning dependencies of target Subgraphs
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[ 40%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs && /usr/bin/c++   -DRDK_64BIT_BUILD -DSubgraphs_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -I/builddir/build/BUILD/rdkit-Release_2015_03_1/External/boost-numeric-bindings    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs/Subgraphs.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/SmartsWrite.cpp:17:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:34:7: warning:   when initialized here [-Wreorder]
       bondholder() : bondType(Bond::UNSPECIFIED),
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, RDKit::Bond::BondStereo, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:37:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,Bond::BondStereo bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, unsigned int, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:42:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,unsigned int bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In member function 'unsigned int RDKit::Canon::AtomCompareFunctor::getAtomRingNbrCode(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:220:21: warning: unused variable 'at' [-Wunused-variable]
         const Atom *at=dp_atoms[i].atom;
                     ^
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Scanning dependencies of target rdMolTransforms
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Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdPartialCharges.so -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libPartialCharges.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp:13:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp: In member function 'RDGeom::Point3D RDKit::MolChemicalFeature::getPos(int) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp:50:10: warning: variable 'setNeg1' set but not used [-Wunused-but-set-variable]
     bool setNeg1=false;
          ^
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Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so
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Linking CXX shared library ../../../lib/libMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libMolChemicalFeatures.so.1 -o ../../../lib/libMolChemicalFeatures.so.1.2015.03.1 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolChemicalFeatures.so.1.2015.03.1 ../../../lib/libMolChemicalFeatures.so.1 ../../../lib/libMolChemicalFeatures.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
Scanning dependencies of target rdqueries
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make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 47%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -Drdqueries_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/rdqueries.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 86
[ 48%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -Drdqueries_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/Queries.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 48%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/SLNAttribs.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/SLNAttribs.cpp: In function 'void RDKit::SLNParse::parseAtomAttribs(RDKit::Atom*, RDKit::SLNParse::AttribListType, bool)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/SLNAttribs.cpp:216:60: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
                                   fTag+"AtomRingBondCount");
                                                            ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 48%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/sln.tab.cpp
Linking CXX shared module ../../../rdkit/Chem/rdqueries.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdqueries.so -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  86
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make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemicalFeatures
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 53
[ 49%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -DSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/lex.yysln.cpp
Linking CXX shared library ../../../lib/libSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libSLNParse.so.1 -o ../../../lib/libSLNParse.so.1.2015.03.1 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libGraphMol.so.1.2015.03.1 -lboost_regex-mt ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libSLNParse.so.1.2015.03.1 ../../../lib/libSLNParse.so.1 ../../../lib/libSLNParse.so
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[ 49%] Built target SLNParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
Scanning dependencies of target RDInchiLib
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 49%] Building CXX object External/INCHI-API/CMakeFiles/RDInchiLib.dir/inchi.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API && /usr/bin/c++   -DBUILD_INCHI_SUPPORT -DRDInchiLib_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -I/usr/include/inchi    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/RDInchiLib.dir/inchi.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 49%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp: In function 'RDKit::Atom* RDKit::{anonymous}::findAlternatingBonds(RDKit::ROMol&, RDKit::Atom*, int, int, RDKit::Bond::BondType, RDKit::Bond::BondType, int, int, RDKit::Bond*, std::stack<RDKit::Bond*>&, std::set<int>&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:229:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (path.size() == 0 || path.size() > currentPathLength) {
                                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp: In function 'bool RDKit::{anonymous}::_Valence5NCleanUpA(RDKit::RWMol&, RDKit::Atom*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:844:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (match[0].second == atom->getIdx() || match[1].second == atom->getIdx())
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:844:82: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         if (match[0].second == atom->getIdx() || match[1].second == atom->getIdx())
                                                                                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp: In function 'RDKit::RWMol* RDKit::InchiToMol(const string&, RDKit::ExtraInchiReturnValues&, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1392:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           for (int i = 0; i < numStereo0D; i ++) {
                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1428:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                   if (*begin != right) {
                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1444:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                   if (*begin != left) {
                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1471:54: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                   if (leftBond->getBeginAtomIdx() != left)
                                                      ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1474:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                   if (extraLeftBond->getBeginAtomIdx() != left)
                                                           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1486:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                   if (rightBond->getBeginAtomIdx() != right)
                                                       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1488:60: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                   if (extraRightBond->getBeginAtomIdx() != right)
                                                            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1498:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if (leftBond->getBeginAtomIdx() != left)
                                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1500:53: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if (rightBond->getBeginAtomIdx() != right)
                                                     ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp: In function 'void RDKit::fixOptionSymbol(const char*, char*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1615:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (i = 0; i < strlen(in); i ++) {
                              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp: In function 'void RDKit::rCleanUp(RDKit::RWMol&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1637:55: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (int match_id = 0; match_id < fgpMatches.size(); match_id ++) {
                                                       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp: In function 'std::string RDKit::MolToInchi(const RDKit::ROMol&, RDKit::ExtraInchiReturnValues&, const char*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/inchi.cpp:1946:48: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for (int i = 0; i < stereo0DEntries.size(); i++) {
                                                ^
Linking CXX shared library ../../lib/libRDInchiLib.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDInchiLib.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libRDInchiLib.so.1 -o ../../lib/libRDInchiLib.so.1.2015.03.1 CMakeFiles/RDInchiLib.dir/inchi.cpp.o -linchi ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libDepictor.so.1.2015.03.1 ../../lib/libSubstructMatch.so.1.2015.03.1 ../../lib/libSmilesParse.so.1.2015.03.1 -lpthread ../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDInchiLib.so.1.2015.03.1 ../../lib/libRDInchiLib.so.1 ../../lib/libRDInchiLib.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
Scanning dependencies of target FileParsers
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make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 50%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp: In function 'bool RDKit::FileParserUtils::ParseV3000CTAB(std::istream*, unsigned int&, RDKit::RWMol*, RDKit::Conformer*&, bool&, unsigned int&, unsigned int&, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp:2027:48: warning: variable 'chiralFlag' set but not used [-Wunused-but-set-variable]
       unsigned int nSgroups=0,n3DConstraints=0,chiralFlag=0;
                                                ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp: In function 'RDKit::RWMol* RDKit::MolDataStreamToMol(std::istream*, unsigned int&, bool, bool, bool)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp:2193:36: warning: variable 'nLists' set but not used [-Wunused-but-set-variable]
     unsigned int nAtoms=0,nBonds=0,nLists=0,chiralFlag=0,nsText=0,nRxnComponents=0;
                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp:2193:58: warning: variable 'nsText' set but not used [-Wunused-but-set-variable]
     unsigned int nAtoms=0,nBonds=0,nLists=0,chiralFlag=0,nsText=0,nRxnComponents=0;
                                                          ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp:2193:67: warning: variable 'nRxnComponents' set but not used [-Wunused-but-set-variable]
     unsigned int nAtoms=0,nBonds=0,nLists=0,chiralFlag=0,nsText=0,nRxnComponents=0;
                                                                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp:2194:9: warning: variable 'nReactants' set but not used [-Wunused-but-set-variable]
     int nReactants=0,nProducts=0,nIntermediates=0;
         ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp:2194:22: warning: variable 'nProducts' set but not used [-Wunused-but-set-variable]
     int nReactants=0,nProducts=0,nIntermediates=0;
                      ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileParser.cpp:2194:34: warning: variable 'nIntermediates' set but not used [-Wunused-but-set-variable]
     int nReactants=0,nProducts=0,nIntermediates=0;
                                  ^
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/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp: In function 'bool RDKit::UFF::getUFFInversionParams(const RDKit::ROMol&, unsigned int, unsigned int, unsigned int, unsigned int, ForceFields::UFF::UFFInv&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp:461:12: warning: unused variable 'isAtom2C' [-Wunused-variable]
       bool isAtom2C = false;
            ^
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/MolFileWriter.cpp
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/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp: In function 'void RDKit::MMFF::Tools::addStretchBend(const RDKit::ROMol&, RDKit::MMFF::MMFFMolProperties*, ForceFields::ForceField*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp:347:22: warning: unused variable 'bondType' [-Wunused-variable]
         unsigned int bondType[2];
                      ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp:350:26: warning: unused variable 'mmffAngleParams' [-Wunused-variable]
         const MMFFAngle *mmffAngleParams = NULL;
                          ^
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Linking CXX shared library ../../../lib/libForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1
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Scanning dependencies of target MolAlign
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[ 52%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign && /usr/bin/c++   -DMolAlign_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp: In constructor 'RDKit::MolAlign::O3A::O3A(RDKit::ROMol&, const RDKit::ROMol&, void*, void*, RDKit::MolAlign::O3A::AtomTypeScheme, int, int, bool, unsigned int, unsigned int, const MatchVectType*, const DoubleVector*, RDKit::MolAlign::LAP*, RDKit::MolAlign::MolHistogram*, RDKit::MolAlign::MolHistogram*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:1008:80: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if (((*constraintMap)[i].first < 0) || ((*constraintMap)[i].first >= prbNAtoms)
                                                                                ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:1009:83: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             || ((*constraintMap)[i].second < 0) || ((*constraintMap)[i].second >= refNAtoms)) {
                                                                                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp: In function 'double RDKit::MolAlign::_rmsdMatchVect(RDKit::ROMol*, const RDKit::ROMol*, const POINT3D_VECT&, const POINT3D_VECT&, const MatchVectType*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:1104:22: warning: unused variable 'j' [-Wunused-variable]
         unsigned int j;
                      ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp: In member function 'double RDKit::MolAlign::O3A::trans(RDGeom::Transform3D&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:1156:35: warning: variable 'matchVectPtr' set but not used [-Wunused-but-set-variable]
       const RDKit::MatchVectType *matchVectPtr = NULL;
                                   ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 18
[ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/SDWriter.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp: In member function 'void RDKit::MolAlign::SDM::prepareMatchWeightsVect(RDKit::MatchVectType&, RDNumeric::DoubleVector&, double (*)(unsigned int, unsigned int, void*), void*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp:718:26: warning: 'min' may be used uninitialized in this function [-Wmaybe-uninitialized]
         weights[i] /= min;
                          ^
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp
Linking CXX shared library ../../../lib/libMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libMolAlign.so.1 -o ../../../lib/libMolAlign.so.1.2015.03.1 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libMolTransforms.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libAlignment.so.1.2015.03.1 ../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolAlign.so.1.2015.03.1 ../../../lib/libMolAlign.so.1 ../../../lib/libMolAlign.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/SmilesWriter.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DDistGeomHelpers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Embedder.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/TDTMolSupplier.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'bool RDKit::DGeomHelpers::_embedPoints(RDGeom::PointPtrVect*, DistGeom::BoundsMatPtr, bool, double, bool, unsigned int, double, double, int, unsigned int, const VECT_CHIRALSET*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Embedder.cpp:77:14: warning: variable 'largestDistance' set but not used [-Wunused-but-set-variable]
       double largestDistance=-1.0;
              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'void RDKit::DGeomHelpers::_findChiralSets(const RDKit::ROMol&, DistGeom::VECT_CHIRALSET&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Embedder.cpp:166:18: warning: variable 'includeSelf' set but not used [-Wunused-but-set-variable]
             bool includeSelf = false;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Embedder.cpp: In function 'void RDKit::DGeomHelpers::detail::embedHelper_(int, int, RDKit::DGeomHelpers::detail::EmbedArgs*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Embedder.cpp:336:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if(ci%numThreads != threadId) continue;
                               ^
Linking CXX shared library ../../../lib/libDistGeomHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDistGeomHelpers.so.1.2015.03.1 ../../../lib/libDistGeomHelpers.so.1 ../../../lib/libDistGeomHelpers.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/testDistGeom.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/PDBParser.cpp: In function 'void RDKit::PDBConformerLine(RDKit::RWMol*, const char*, unsigned int, RDKit::Conformer*&, int&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/PDBParser.cpp:402:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if (conformer_atmidx < mol->getNumAtoms()) {
                                               ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/PDBWriter.cpp
Linking CXX executable testDistGeom
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o  -o testDistGeom -rdynamic ../../lib/libDistGeometry.so.1.2015.03.1 ../../lib/libEigenSolvers.so.1.2015.03.1 ../../lib/libForceField.so.1.2015.03.1 ../../lib/libOptimizer.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Scanning dependencies of target DistGeom
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/Wrap && /usr/bin/c++   -DDistGeom_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/Wrap/DistGeom.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/Wrap/DistGeom.cpp:15:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 21
[ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/PDBSupplier.cpp
Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,DistGeom.so -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libDistGeometry.so.1.2015.03.1 ../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../lib/libForceField.so.1.2015.03.1 ../../../lib/libOptimizer.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DFileParsers_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/ProximityBonds.cpp
Linking CXX executable graphmolIterTest
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolIterTest.dir/itertest.cpp.o  -o graphmolIterTest -rdynamic ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Scanning dependencies of target graphmolMemTest1
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp
Linking CXX shared library ../../../lib/libFileParsers.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libFileParsers.so.1 -o ../../../lib/libFileParsers.so.1.2015.03.1 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libFileParsers.so.1 ../../../lib/libFileParsers.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/cptest.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp: In function 'void testBasics()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:29:9: warning: variable 'a1' set but not used [-Wunused-but-set-variable]
   Atom *a1 = new Atom(6);
         ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:30:9: warning: unused variable 'b1' [-Wunused-variable]
   Bond *b1 = new Bond();
         ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:31:10: warning: unused variable 'm1' [-Wunused-variable]
   ROMol *m1 = new ROMol();
          ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp: In function 'void testSMILES()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:41:10: warning: variable 'm' set but not used [-Wunused-but-set-variable]
   ROMol *m = SmilesToMol(smi);
          ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp: In function 'void testMols()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:95:12: warning: unused variable 'm' [-Wunused-variable]
     RWMol *m=SmilesToMol(smis[i],0,false);
            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp: In function 'void testProps()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:112:18: warning: unused variable 'v' [-Wunused-variable]
     unsigned int v=1;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:117:18: warning: unused variable 'v' [-Wunused-variable]
     unsigned int v=1;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:122:18: warning: unused variable 'v' [-Wunused-variable]
     unsigned int v=1;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:128:18: warning: unused variable 'v' [-Wunused-variable]
     unsigned int v=1;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:135:18: warning: unused variable 'v' [-Wunused-variable]
     unsigned int v=1;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:140:18: warning: unused variable 'v' [-Wunused-variable]
     unsigned int v=1;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/memtest1.cpp:146:18: warning: unused variable 'v' [-Wunused-variable]
     unsigned int v=1;
                  ^
Linking CXX executable graphmolMemTest1
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make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolqueryTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 59%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/querytest.cpp
Linking CXX executable graphmolcpTest
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolcpTest.dir/cptest.cpp.o  -o graphmolcpTest -rdynamic ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestCanon
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/testCanon.cpp
Linking CXX executable graphmoltestCanon
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o  -o graphmoltestCanon -rdynamic ../../lib/libSubstructMatch.so.1.2015.03.1 ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  64
[ 60%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmoltestChirality
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/testChirality.cpp
Linking CXX executable graphmolqueryTest
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o  -o graphmolqueryTest -rdynamic ../../lib/libSubstructMatch.so.1.2015.03.1 ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 60%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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Scanning dependencies of target graphmoltestPickler
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/testPickler.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/testChirality.cpp:20:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:34:7: warning:   when initialized here [-Wreorder]
       bondholder() : bondType(Bond::UNSPECIFIED),
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, RDKit::Bond::BondStereo, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:37:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,Bond::BondStereo bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, unsigned int, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:42:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,unsigned int bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In member function 'unsigned int RDKit::Canon::AtomCompareFunctor::getAtomRingNbrCode(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:220:21: warning: unused variable 'at' [-Wunused-variable]
         const Atom *at=dp_atoms[i].atom;
                     ^
Linking CXX executable graphmoltestPickler
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o  -o graphmoltestPickler -rdynamic ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libSubstructMatch.so.1.2015.03.1 ../../lib/libFileParsers.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 60%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
Scanning dependencies of target hanoiTest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 65
[ 61%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/hanoitest.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/hanoitest.cpp:10:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:34:7: warning:   when initialized here [-Wreorder]
       bondholder() : bondType(Bond::UNSPECIFIED),
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, RDKit::Bond::BondStereo, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:37:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,Bond::BondStereo bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, unsigned int, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:42:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,unsigned int bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In member function 'unsigned int RDKit::Canon::AtomCompareFunctor::getAtomRingNbrCode(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:220:21: warning: unused variable 'at' [-Wunused-variable]
         const Atom *at=dp_atoms[i].atom;
                     ^
Linking CXX executable graphmoltestChirality
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o  -o graphmoltestChirality -rdynamic ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libFileParsers.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 61%] Built target graphmoltestChirality
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
Scanning dependencies of target ChemTransforms
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 61%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms/ChemTransforms.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In function 'void test3()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:574:11: warning: 'symclass' may be used uninitialized in this function [-Wmaybe-uninitialized]
           atoms[index].index = symclass;
           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:522:20: note: 'symclass' was declared here
       register int symclass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:574:11: warning: 'symclass' may be used uninitialized in this function [-Wmaybe-uninitialized]
           atoms[index].index = symclass;
           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:522:20: note: 'symclass' was declared here
       register int symclass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In function 'void RDKit::Canon::RefinePartitions(const RDKit::ROMol&, RDKit::Canon::canon_atom*, CompareFunc, int, int*, int*, int&, int*, int*, char*) [with CompareFunc = atomcomparefunctor3]':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:574:11: warning: 'symclass' may be used uninitialized in this function [-Wmaybe-uninitialized]
           atoms[index].index = symclass;
           ^
Linking CXX executable hanoiTest
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Scanning dependencies of target rdDepictor
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In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /usr/include/numpy/oldnumeric.h:1,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp:14:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 5
[ 63%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DChemTransforms_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms/MolFragmenter.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so
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Linking CXX shared library ../../../lib/libChemTransforms.so
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Linking CXX executable smaTest1
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/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/test1.cpp: In function 'void testMissingFiles()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/test1.cpp:1608:10: warning: variable 'm' set but not used [-Wunused-but-set-variable]
   RWMol *m;
          ^
Linking CXX executable smiTest1
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Linking CXX executable testMol2ToMol
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Scanning dependencies of target testMolSupplier
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testMolSupplier.cpp
Linking CXX executable fileParsersTest1
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/fileParsersTest1.dir/test1.cpp.o  -o fileParsersTest1 -rdynamic ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 63%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolWriter
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testMolWriter.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testMolSupplier.cpp: In function 'int testMolSup()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testMolSupplier.cpp:69:14: warning: unused variable 'mol' [-Wunused-variable]
       ROMol *mol = sdsup.next();
              ^
Linking CXX executable testMolSupplier
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o  -o testMolSupplier -rdynamic ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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Scanning dependencies of target testTplParser
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testTpls.cpp
Linking CXX executable testMolWriter
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o  -o testMolWriter -rdynamic ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
Scanning dependencies of target testSubstructMatch
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 64%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/test1.cpp
Linking CXX executable testTplParser
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testTplParser.dir/testTpls.cpp.o  -o testTplParser -rdynamic ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 64%] Built target testTplParser
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target Fingerprints
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 64%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/Fingerprints.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RDKitBase.h:20:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/test1.cpp:17:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/test1.cpp: In function 'void test4()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/test1.cpp:274:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   TEST_ASSERT(matches.size()==n);
                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:139:36: note: in definition of macro 'TEST_ASSERT'
 #define TEST_ASSERT( expr ) if ( !(expr) ) {\
                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/test1.cpp: In function 'void testGitHubIssue409()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/test1.cpp:1029:18: warning: variable 'matched' set but not used [-Wunused-but-set-variable]
     unsigned int matched=SubstructMatch(*mol,*mol,matches,false,true,false,false);
                  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 22
[ 65%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/PatternFingerprints.cpp
Linking CXX executable testSubstructMatch
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubstructMatch.dir/test1.cpp.o  -o testSubstructMatch -rdynamic ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
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Scanning dependencies of target testChemTransforms
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms/testChemTransforms.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/MorganFingerprints.cpp
Linking CXX executable testChemTransforms
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o  -o testChemTransforms -rdynamic ../../../lib/libChemTransforms.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints && /usr/bin/c++   -DFingerprints_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/AtomPairs.cpp
Linking CXX executable testSubgraphs1
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Linking CXX executable testSubgraphs2
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSubgraphs2.dir/test2.cpp.o  -o testSubgraphs2 -rdynamic ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Scanning dependencies of target FragCatalog
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Linking CXX shared library ../../../lib/libFingerprints.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libFingerprints.so.1 -o ../../../lib/libFingerprints.so.1.2015.03.1 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFingerprints.so.1.2015.03.1 ../../../lib/libFingerprints.so.1 ../../../lib/libFingerprints.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/test1.cpp
Linking CXX executable testPartialCharges
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testPartialCharges.dir/test1.cpp.o  -o testPartialCharges -rdynamic ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 -lpthread ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/test1.cpp
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/FragCatGenerator.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/test1.cpp: In function 'void test1Canonicalization()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/test1.cpp:33:7: warning: variable 'cid' set but not used [-Wunused-but-set-variable]
   int cid = mol->addConformer(conf, true);
       ^
Linking CXX executable testMolTransforms
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolTransforms.dir/test1.cpp.o  -o testMolTransforms -rdynamic ../../../lib/libMolTransforms.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp
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[ 70%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp: In function 'void testIssue239()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp:405:7: warning: variable 'needMore' set but not used [-Wunused-but-set-variable]
   int needMore;
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp: In function 'void testIssue242()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp:441:7: warning: variable 'needMore' set but not used [-Wunused-but-set-variable]
   int needMore;
       ^
Linking CXX executable testMMFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o  -o testMMFFForceFieldHelpers -rdynamic ../../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../../lib/libDistGeomHelpers.so.1.2015.03.1 ../../../../lib/libDistGeometry.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libMolTransforms.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libForceField.so.1.2015.03.1 ../../../../lib/libMolAlign.so.1.2015.03.1 ../../../../lib/libOptimizer.so.1.2015.03.1 ../../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../../lib/libAlignment.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread ../../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../../lib/libForceField.so.1.2015.03.1 ../../../../lib/libOptimizer.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libMolTransforms.so.1.2015.03.1 ../../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 70%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testUFFForceFieldHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 71%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 71%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/FragCatParams.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp: In function 'void testIssue239()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp:636:7: warning: variable 'needMore' set but not used [-Wunused-but-set-variable]
   int needMore;
       ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 33
[ 72%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog && /usr/bin/c++   -DFragCatalog_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/FragFPGenerator.cpp
Linking CXX shared library ../../../lib/libFragCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libFragCatalog.so.1 -o ../../../lib/libFragCatalog.so.1.2015.03.1 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libCatalogs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 -lpthread ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFragCatalog.so.1.2015.03.1 ../../../lib/libFragCatalog.so.1 ../../../lib/libFragCatalog.so
Linking CXX executable testUFFForceFieldHelpers
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 72%] Built target FragCatalog
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o  -o testUFFForceFieldHelpers -rdynamic ../../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../../lib/libDistGeomHelpers.so.1.2015.03.1 ../../../../lib/libDistGeometry.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libMolTransforms.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libForceField.so.1.2015.03.1 ../../../../lib/libMolAlign.so.1.2015.03.1 ../../../../lib/libOptimizer.so.1.2015.03.1 ../../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../../lib/libAlignment.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread ../../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../../lib/libForceField.so.1.2015.03.1 ../../../../lib/libOptimizer.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libMolTransforms.so.1.2015.03.1 ../../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target rdForceFieldHelpers
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 72%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdForceFieldHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp
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[ 72%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
Scanning dependencies of target testDistGeomHelpers
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp
Linking CXX executable testDistGeomHelpers
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o  -o testDistGeomHelpers -rdynamic ../../../lib/libDistGeomHelpers.so.1.2015.03.1 ../../../lib/libDistGeometry.so.1.2015.03.1 ../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../lib/libForceField.so.1.2015.03.1 ../../../lib/libMolAlign.so.1.2015.03.1 ../../../lib/libMolTransforms.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libOptimizer.so.1.2015.03.1 ../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../lib/libAlignment.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
Scanning dependencies of target rdDistGeom
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 72%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdDistGeom_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdForceFieldHelpers.so -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libForceField.so.1.2015.03.1 ../../../../lib/libOptimizer.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt -lpthread ../../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
Scanning dependencies of target testFeatures
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp:13:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp: In function 'void testIssue348()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp:775:7: warning: variable 'res' set but not used [-Wunused-but-set-variable]
   int res;
       ^
Linking CXX executable testFeatures
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFeatures.dir/testFeatures.cpp.o  -o testFeatures -rdynamic ../../../lib/libMolChemicalFeatures.so.1.2015.03.1 ../../../lib/libCatalogs.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Scanning dependencies of target rdMolChemicalFeatures
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[ 72%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdDistGeom.so -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libDistGeomHelpers.so.1.2015.03.1 ../../../../lib/libDistGeometry.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libMolTransforms.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../../lib/libForceField.so.1.2015.03.1 ../../../../lib/libMolAlign.so.1.2015.03.1 ../../../../lib/libOptimizer.so.1.2015.03.1 ../../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../../lib/libAlignment.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libMolTransforms.so.1.2015.03.1 ../../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp: In function 'void test2Compare()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp:60:10: warning: variable 'rmsd' set but not used [-Wunused-but-set-variable]
   double rmsd = MolAlign::alignMol(*m, *m2);
          ^
Linking CXX executable testShapeHelpers
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o  -o testShapeHelpers -rdynamic ../../../lib/libShapeHelpers.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libMolAlign.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libMolTransforms.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../lib/libAlignment.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Scanning dependencies of target rdShapeHelpers
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdShapeHelpers_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 73
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /usr/include/numpy/oldnumeric.h:1,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdShapeHelpers.so -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libShapeHelpers.so.1.2015.03.1 ../../../../lib/libMolTransforms.so.1.2015.03.1 ../../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
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Scanning dependencies of target testMolCatalog
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp
Linking CXX executable testMolCatalog
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolCatalog.dir/test1.cpp.o  -o testMolCatalog -rdynamic ../../../lib/libMolCatalog.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libCatalogs.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolCatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 74%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolChemicalFeatures_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolCatalog.so -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libMolCatalog.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libCatalogs.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target MolDraw2D
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 45
[ 75%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2D.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolChemicalFeatures.so -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libMolChemicalFeatures.so.1.2015.03.1 ../../../../lib/libCatalogs.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libDataStructs.so.1.2015.03.1 -lpthread ../../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCS
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 75%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/point.h:24:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2D.h:27,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:12:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2D.cpp: In member function 'RDKit::DrawColour RDKit::MolDraw2D::getColour(int, const std::vector<int>*, const std::map<int, boost::tuples::tuple<float, float, float> >*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:487:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     PRECONDITION(atomic_nums_.size()>atom_idx,"bad atom_idx");
                                      ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:119:43: note: in definition of macro 'PRECONDITION'
 #define PRECONDITION( expr, mess ) if ( !(expr) ) {\
                                           ^
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.h:23:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp:18:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h: In member function 'void RDKit::FMCS::RingMatchTableSet::makeRingGraph(RDKit::FMCS::Graph&, const INT_VECT&, const RDKit::ROMol*) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h:178:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1==j1) {
                            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h:183:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1==j2) {
                            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp: In function 'void RDKit::parseMCSParametersJSON(const char*, RDKit::MCSParameters*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp:26:27: warning: unused variable 'iss' [-Wunused-variable]
             std::istream& iss = ss;
                           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp: In function 'bool RDKit::FinalChiralityCheckFunction(const short unsigned int*, const short unsigned int*, const RDKit::ROMol&, const RDKit::FMCS::Graph&, const RDKit::ROMol&, const RDKit::FMCS::Graph&, const RDKit::MCSParameters*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp:367:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if(target[c2[qMap[qBnd->getStereoAtoms()[0]]]]==mBnd->getStereoAtoms()[0]) end1Matches=1;
                                                                                         ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp:368:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if(target[c2[qMap[qBnd->getStereoAtoms()[1]]]]==mBnd->getStereoAtoms()[1]) end2Matches=1;
                                                                                         ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp:371:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if(target[c2[qMap[qBnd->getStereoAtoms()[0]]]]==mBnd->getStereoAtoms()[1])
                                                                                         ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp:373:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if(target[c2[qMap[qBnd->getStereoAtoms()[1]]]]==mBnd->getStereoAtoms()[0])
                                                                                         ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/FMCS.cpp:345:22: warning: unused variable 'qtbi' [-Wunused-variable]
             unsigned qtbi = query[*bIter]; // bond index in seed topology defenition
                      ^
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2D.cpp:13:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h: At global scope:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h:28:16: warning: 'RDKit::MolDraw2D_detail::char_widths' defined but not used [-Wunused-variable]
     static int char_widths[]={0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,278,278,355,556,556,889,667,222,333,333,389,584,278,333,278,278,556,556,556,556,556,556,556,556,556,556,278,278,584,584,584,556,1015,667,667,722,722,667,611,778,722,278,500,667,556,833,722,778,667,778,722,667,611,722,667,944,667,667,611,278,278,278,469,556,222,556,556,500,556,556,278,556,556,222,222,500,222,833,556,556,556,556,333,500,278,556,500,722,500,500,500,334,260,334,584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,333,556,556,167,556,556,556,556,191,333,556,333,333,500,500,0,556,556,556,278,0,537,350,222,333,333,556,1000,1000,0,611,0,333,333,333,333,333,333,333,333,0,333,333,0,333,333,333,1000,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1000,0,370,0,0,0,0,556,778,1000,365,0,0,0,0,0,889,0,0,0,278,0,0,222,611,944,611,0,0,834};
                ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 75%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp: In member function 'virtual void RDKit::MolDraw2DSVG::setFontSize(double)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp:169:12: warning: unused variable 'font_size_in_points' [-Wunused-variable]
     double font_size_in_points = fontSize() * scale();
            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp: In member function 'virtual void RDKit::MolDraw2DSVG::getStringSize(const string&, double&, double&) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp:193:98: warning: array subscript has type 'char' [-Wchar-subscripts]
       double char_width = fontSize() * static_cast<double>(MolDraw2D_detail::char_widths[label[i]]) / MolDraw2D_detail::char_widths['M'];
                                                                                                  ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 75%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DMolDraw2D_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 75%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp: In function 'void RDKit::MolDraw2D_detail::arcPoints(const RDGeom::Point2D&, const RDGeom::Point2D&, std::vector<RDGeom::Point2D>&, float, float)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp:37:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       for(unsigned int i=0;i<=steps;++i){
                               ^
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp:11:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h: At global scope:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h:28:16: warning: 'RDKit::MolDraw2D_detail::char_widths' defined but not used [-Wunused-variable]
     static int char_widths[]={0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,278,278,355,556,556,889,667,222,333,333,389,584,278,333,278,278,556,556,556,556,556,556,556,556,556,556,278,278,584,584,584,556,1015,667,667,722,722,667,611,778,722,278,500,667,556,833,722,778,667,778,722,667,611,722,667,944,667,667,611,278,278,278,469,556,222,556,556,500,556,556,278,556,556,222,222,500,222,833,556,556,556,556,333,500,278,556,500,722,500,500,500,334,260,334,584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,333,556,556,167,556,556,556,556,191,333,556,333,333,500,500,0,556,556,556,278,0,537,350,222,333,333,556,1000,1000,0,611,0,333,333,333,333,333,333,333,333,0,333,333,0,333,333,333,1000,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1000,0,370,0,0,0,0,556,778,1000,365,0,0,0,0,0,889,0,0,0,278,0,0,222,611,944,611,0,0,834};
                ^
Linking CXX shared library ../../../lib/libMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libMolDraw2D.so.1 -o ../../../lib/libMolDraw2D.so.1.2015.03.1 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 -lpthread ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolDraw2D.so.1.2015.03.1 ../../../lib/libMolDraw2D.so.1 ../../../lib/libMolDraw2D.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  45
[ 75%] Built target MolDraw2D
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target testSLNParse
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 75%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/test.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.h:23:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp:10:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h: In member function 'void RDKit::FMCS::RingMatchTableSet::makeRingGraph(RDKit::FMCS::Graph&, const INT_VECT&, const RDKit::ROMol*) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h:178:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1==j1) {
                            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h:183:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1==j2) {
                            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp: In member function 'void RDKit::FMCS::Seed::fillNewBonds(const RDKit::ROMol&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp:67:102: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                         NewBonds.push_back(NewBond(srcAtomIdx, bond->getIdx(), ai, end_atom_idx, -1==end_atom_idx ? end_atom:0));
                                                                                                      ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp: In member function 'void RDKit::FMCS::Seed::grow(RDKit::FMCS::MaximumCommonSubgraph&) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp:102:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1 == aIdx) { // new atom
                              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp:157:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if(-1 == aIdx) { // new atom
                          ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp:187:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1 != nbi->BondIdx)
                                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Seed.cpp:241:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                             if(-1 == aIdx) { // new atom
                                      ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 15
[ 76%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.h:23:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:20:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h: In member function 'void RDKit::FMCS::RingMatchTableSet::makeRingGraph(RDKit::FMCS::Graph&, const INT_VECT&, const RDKit::ROMol*) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h:178:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1==j1) {
                            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/RingMatchTableSet.h:183:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1==j2) {
                            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp: In member function 'void RDKit::FMCS::MaximumCommonSubgraph::init()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:115:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                         if(-1 == QueryAtomLabels[ai]) { // not found -> create new label
                                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:157:48: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                     if(-1 == QueryAtomLabels[aj]) { // not found -> create new label
                                                ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp: In member function 'bool RDKit::FMCS::MaximumCommonSubgraph::growSeeds()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:377:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 if(-1 == si->GrowingStage) //finished
                              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp: In member function 'bool RDKit::FMCS::MaximumCommonSubgraph::checkIfMatchAndAppend(RDKit::FMCS::Seed&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:680:18: warning: variable 'cacheEntryIsValid' set but not used [-Wunused-but-set-variable]
             bool cacheEntryIsValid = false;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp: In member function 'bool RDKit::FMCS::MaximumCommonSubgraph::matchIncrementalFast(RDKit::FMCS::Seed&, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp:924:38: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
                 for(mi=0; mi < match.MatchedAtomSize; mi++) {
                                      ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 76%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS && /usr/bin/c++   -DFMCS_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/SubstructMatchCustom.cpp
Linking CXX executable testSLNParse
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testSLNParse.dir/test.cpp.o  -o testSLNParse -rdynamic ../../../lib/libSLNParse.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lboost_regex-mt ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
Scanning dependencies of target rdSLNParse
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 76%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdSLNParse_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp
Linking CXX shared library ../../../lib/libFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libFMCS.so.1 -o ../../../lib/libFMCS.so.1.2015.03.1 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libChemTransforms.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libFMCS.so.1.2015.03.1 ../../../lib/libFMCS.so.1 ../../../lib/libFMCS.so
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  15
[ 76%] Built target FMCS
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
Scanning dependencies of target rdchem
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 77
[ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -Drdchem_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/rdchem.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdSLNParse.so -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libSLNParse.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt -lboost_regex-mt ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 77%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
Scanning dependencies of target rdmolfiles
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 82
[ 78%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -Drdmolfiles_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/rdmolfiles.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /usr/include/numpy/oldnumeric.h:1,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/rdchem.cpp:15:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/rdmolfiles.cpp:18:0:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:34:7: warning:   when initialized here [-Wreorder]
       bondholder() : bondType(Bond::UNSPECIFIED),
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, RDKit::Bond::BondStereo, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:37:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,Bond::BondStereo bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In constructor 'RDKit::Canon::bondholder::bondholder(RDKit::Bond::BondType, unsigned int, unsigned int, unsigned int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:33:20: warning: 'RDKit::Canon::bondholder::nbrIdx' will be initialized after [-Wreorder]
       unsigned int nbrIdx;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:32:20: warning:   'unsigned int RDKit::Canon::bondholder::nbrSymClass' [-Wreorder]
       unsigned int nbrSymClass;
                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:42:7: warning:   when initialized here [-Wreorder]
       bondholder(Bond::BondType bt,unsigned int bs,unsigned int ni,unsigned int nsc) :
       ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h: In member function 'unsigned int RDKit::Canon::AtomCompareFunctor::getAtomRingNbrCode(unsigned int) const':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/new_canon.h:220:21: warning: unused variable 'at' [-Wunused-variable]
         const Atom *at=dp_atoms[i].atom;
                     ^
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In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
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 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
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Linking CXX shared module ../../../rdkit/Chem/rdchem.so
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/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdchem.so -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libChemTransforms.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/MolOps.cpp:14:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors && /usr/bin/c++   -DDescriptors_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Crippen.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/MolOps.cpp: In function 'boost::python::tuple RDKit::getShortestPathHelper(const RDKit::ROMol&, int, int)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/MolOps.cpp:119:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if(aid1<0 || aid1>=mol.getNumAtoms() ||
                                          ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/MolOps.cpp:120:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
          aid2<0 || aid2>=mol.getNumAtoms() ){
                                          ^
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/testUFFForceField.cpp: In function 'void testUFF7()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/testUFFForceField.cpp:685:41: warning: variable 'param2' set but not used [-Wunused-but-set-variable]
   ForceFields::UFF::AtomicParams param1,param2;
                                         ^
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Linking CXX executable testUFFForceField
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/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/testMMFFForceField.cpp: In function 'int mmffValidationSuite(int, char**)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/testMMFFForceField.cpp:293:14: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   while (i < argc) {
              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/testMMFFForceField.cpp:304:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       error = ((i + 1) >= argc);
                           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/testMMFFForceField.cpp:317:21: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       if ((i + 1) < argc) {
                     ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/testMMFFForceField.cpp:327:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       error = ((i + 1) >= argc);
                           ^
Linking CXX shared library ../../../lib/libDescriptors.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libDescriptors.so.1.2015.03.1 ../../../lib/libDescriptors.so.1 ../../../lib/libDescriptors.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/molopstest.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/testMMFFForceField.cpp:1353:11: warning: 'failed' may be used uninitialized in this function [-Wmaybe-uninitialized]
           if (!failed) {
           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/molopstest.cpp: In function 'void testGithubIssue418()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/molopstest.cpp:4624:14: warning: unused variable 'm' [-Wunused-variable]
       RWMol *m = SmilesToMol(smiles);
              ^
Linking CXX executable testMMFFForceField
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o  -o testMMFFForceField -rdynamic ../../../lib/libDistGeomHelpers.so.1.2015.03.1 ../../../lib/libDistGeometry.so.1.2015.03.1 ../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../lib/libForceField.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libMolTransforms.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libMolAlign.so.1.2015.03.1 ../../../lib/libOptimizer.so.1.2015.03.1 ../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../lib/libAlignment.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread ../../../lib/libMolTransforms.so.1.2015.03.1 ../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 -lpthread ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 86%] Built target testMMFFForceField
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target graphmolTest1
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 63
[ 87%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/test1.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RDKitBase.h:20:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/test1.cpp:12:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/test1.cpp: In function 'void testIssue2381580()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/test1.cpp:736:142: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     TEST_ASSERT(m->getAtomWithIdx(0)->getExplicitValence()+m->getAtomWithIdx(0)->getImplicitValence()==m->getAtomWithIdx(0)->getTotalValence());
                                                                                                                                              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:139:36: note: in definition of macro 'TEST_ASSERT'
 #define TEST_ASSERT( expr ) if ( !(expr) ) {\
                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/test1.cpp:737:142: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     TEST_ASSERT(m->getAtomWithIdx(1)->getExplicitValence()+m->getAtomWithIdx(1)->getImplicitValence()==m->getAtomWithIdx(1)->getTotalValence());
                                                                                                                                              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:139:36: note: in definition of macro 'TEST_ASSERT'
 #define TEST_ASSERT( expr ) if ( !(expr) ) {\
                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/test1.cpp:738:142: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     TEST_ASSERT(m->getAtomWithIdx(2)->getExplicitValence()+m->getAtomWithIdx(2)->getImplicitValence()==m->getAtomWithIdx(2)->getTotalValence());
                                                                                                                                              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:139:36: note: in definition of macro 'TEST_ASSERT'
 #define TEST_ASSERT( expr ) if ( !(expr) ) {\
                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/test1.cpp:739:142: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     TEST_ASSERT(m->getAtomWithIdx(3)->getExplicitValence()+m->getAtomWithIdx(3)->getImplicitValence()==m->getAtomWithIdx(3)->getTotalValence());
                                                                                                                                              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:139:36: note: in definition of macro 'TEST_ASSERT'
 #define TEST_ASSERT( expr ) if ( !(expr) ) {\
                                    ^
Linking CXX executable graphmolTest1
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/graphmolTest1.dir/test1.cpp.o  -o graphmolTest1 -rdynamic ../../lib/libFileParsers.so.1.2015.03.1 ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Scanning dependencies of target testDepictor
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[ 87%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/testDepictor.cpp
Linking CXX executable testDepictor
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/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDepictor.dir/testDepictor.cpp.o  -o testDepictor -rdynamic ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libChemTransforms.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Scanning dependencies of target ChemReactions
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Reaction.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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Linking CXX executable graphmolMolOpsTest
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 2
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionWriter.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 3
[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionDepict.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 91%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RDKitBase.h:20:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:33:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp: In function 'RDKit::SparseIntVect<unsigned int>* RDKit::DifferenceFingerprintChemReaction(const RDKit::ChemicalReaction&, const RDKit::ReactionFingerprintParams&)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:223:28: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
  PRECONDITION(params.fpType>0 & params.fpType<4 ,"Fingerprinttype not supported");
                            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:119:43: note: in definition of macro 'PRECONDITION'
 #define PRECONDITION( expr, mess ) if ( !(expr) ) {\
                                           ^
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionUtils.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 81
[ 92%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 4
[ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/MoleculeParser.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DChemReactions_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionRunner.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 93%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -Drdfragcatalog_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionRunner.cpp: In function 'void RDKit::ReactionRunnerUtils::addMissingProductAtom(const RDKit::Atom&, unsigned int, unsigned int, RDKit::RWMOL_SPTR, const RDKit::ROMol&, RDKit::ReactionRunnerUtils::ReactantProductAtomMapping*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/ReactionRunner.cpp:421:20: warning: unused variable 'endIdx' [-Wunused-variable]
       unsigned int endIdx=origB->getEndAtomIdx();
                    ^
Linking CXX shared library ../../../lib/libChemReactions.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libChemReactions.so.1.2015.03.1 ../../../lib/libChemReactions.so.1 ../../../lib/libChemReactions.so
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/test.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdfragcatalog.so -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libFragCatalog.so.1.2015.03.1 ../../../../lib/libSubgraphs.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libCatalogs.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  80 81
[ 93%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDescriptors
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[ 94%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolDescriptors_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:14:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
Linking CXX executable testDescriptors
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testDescriptors.dir/test.cpp.o  -o testDescriptors -rdynamic ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libDescriptors.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 -lpthread ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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Scanning dependencies of target testFingerprints
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 94%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/test1.cpp
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RDKitBase.h:20:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/test1.cpp:12:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/test1.cpp: In function 'void testMorganAtomInfo()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/test1.cpp:1756:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       TEST_ASSERT(iter->second==bitInfo[iter->first].size());
                                                           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:139:36: note: in definition of macro 'TEST_ASSERT'
 #define TEST_ASSERT( expr ) if ( !(expr) ) {\
                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/test1.cpp:1770:59: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
       TEST_ASSERT(iter->second==bitInfo[iter->first].size());
                                                           ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:139:36: note: in definition of macro 'TEST_ASSERT'
 #define TEST_ASSERT( expr ) if ( !(expr) ) {\
                                    ^
Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolDescriptors.so -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libDescriptors.so.1.2015.03.1 ../../../../lib/libPartialCharges.so.1.2015.03.1 ../../../../lib/libFingerprints.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubgraphs.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  74
[ 94%] Built target rdMolDescriptors
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolAlign
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 94%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/testMolAlign.cpp
Linking CXX executable testFingerprints
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFingerprints.dir/test1.cpp.o  -o testFingerprints -rdynamic ../../../lib/libFingerprints.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolAlign
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 72
[ 95%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolAlign_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp
Linking CXX executable testMolAlign
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o  -o testMolAlign -rdynamic ../../../lib/libMolAlign.so.1.2015.03.1 ../../../lib/libDescriptors.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libDistGeomHelpers.so.1.2015.03.1 ../../../lib/libMolTransforms.so.1.2015.03.1 ../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libDistGeometry.so.1.2015.03.1 ../../../lib/libForceField.so.1.2015.03.1 ../../../lib/libOptimizer.so.1.2015.03.1 ../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../lib/libAlignment.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 -lpthread ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
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make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
Scanning dependencies of target moldraw2DTest1
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 66
[ 96%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/test1.cpp
In file included from /usr/include/numpy/ndarraytypes.h:1728:0,
                 from /usr/include/numpy/ndarrayobject.h:17,
                 from /usr/include/numpy/arrayobject.h:15,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:16:
/usr/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION"
  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'RDKit::MolAlign::PyO3A* RDKit::MolAlign::getMMFFO3A(RDKit::ROMol&, RDKit::ROMol&, boost::python::api::object, boost::python::api::object, int, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:264:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if (((*cMap)[i].first < 0) || ((*cMap)[i].first >= prbMol.getNumAtoms())
                                                                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:265:84: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             || ((*cMap)[i].second < 0) || ((*cMap)[i].second >= refMol.getNumAtoms())) {
                                                                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'boost::python::tuple RDKit::MolAlign::getMMFFO3AForConfs(RDKit::ROMol&, RDKit::ROMol&, unsigned int, boost::python::api::object, boost::python::api::object, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:339:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if (((*cMap)[i].first < 0) || ((*cMap)[i].first >= prbMol.getNumAtoms())
                                                                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:340:84: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             || ((*cMap)[i].second < 0) || ((*cMap)[i].second >= refMol.getNumAtoms())) {
                                                                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'RDKit::MolAlign::PyO3A* RDKit::MolAlign::getCrippenO3A(RDKit::ROMol&, RDKit::ROMol&, boost::python::list, boost::python::list, int, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:417:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if (((*cMap)[i].first < 0) || ((*cMap)[i].first >= prbMol.getNumAtoms())
                                                                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:418:84: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             || ((*cMap)[i].second < 0) || ((*cMap)[i].second >= refMol.getNumAtoms())) {
                                                                                    ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp: In function 'boost::python::tuple RDKit::MolAlign::getCrippenO3AForConfs(RDKit::ROMol&, RDKit::ROMol&, unsigned int, boost::python::list, boost::python::list, int, bool, unsigned int, unsigned int, boost::python::list, boost::python::list)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:498:81: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
           if (((*cMap)[i].first < 0) || ((*cMap)[i].first >= prbMol.getNumAtoms())
                                                                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp:499:84: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             || ((*cMap)[i].second < 0) || ((*cMap)[i].second >= refMol.getNumAtoms())) {
                                                                                    ^
Linking CXX executable moldraw2DTest1
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/moldraw2DTest1.dir/test1.cpp.o  -o moldraw2DTest1 -rdynamic ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libMolDraw2D.so.1.2015.03.1 -lpthread ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  66
[ 96%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolDraw2D
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 96%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolDraw2D_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolAlign.so -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libMolAlign.so.1.2015.03.1 ../../../../lib/libMolTransforms.so.1.2015.03.1 ../../../../lib/libForceFieldHelpers.so.1.2015.03.1 ../../../../lib/libForceField.so.1.2015.03.1 ../../../../lib/libEigenSolvers.so.1.2015.03.1 ../../../../lib/libAlignment.so.1.2015.03.1 ../../../../lib/libOptimizer.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libDescriptors.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libPartialCharges.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubgraphs.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  72
[ 96%] Built target rdMolAlign
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target testFMCS
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 90
[ 97%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void test1Basics()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:93:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++) {
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void test32()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:125:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void test190()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:155:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void test45()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:185:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void test3()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:214:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testRing1()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:235:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void test504()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:278:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=1; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void test18()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:315:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=1; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testThreshold()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:334:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void test330()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:366:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testTarget_no_10188_30149()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:395:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testTarget_no_10188_49064()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:432:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testSegFault()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:463:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testAtomCompareIsotopes()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:483:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testAtomCompareAnyAtom()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:508:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testAtomCompareAnyAtomBond()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:532:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testSimple()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:562:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testSimpleFast()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:590:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
In file included from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/types.h:20:0,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/utils.h:14,
                 from /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:47:
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp: In function 'void testJSONParameters()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS_Unit.cpp:687:83: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     TEST_ASSERT(pj.MaximizeBonds == true && pj.Threshold == 1.0 && pj.Timeout == -1 &&
                                                                                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.h:139:36: note: in definition of macro 'TEST_ASSERT'
 #define TEST_ASSERT( expr ) if ( !(expr) ) {\
                                    ^
Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolDraw2D.so -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libMolDraw2D.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libDepictor.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libSubgraphs.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 97%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
Scanning dependencies of target rdFMCS
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 97%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdFMCS_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp
Linking CXX executable testFMCS
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o  -o testFMCS -rdynamic ../../../lib/libFMCS.so.1.2015.03.1 ../../../lib/libChemTransforms.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 -lpthread ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  90
[ 97%] Built target testFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
Scanning dependencies of target FMCStest
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 97%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void test504()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:397:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=1; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'std::string testChEMBL_Txt(const char*, double, const char*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:409:14: warning: unused variable 'n' [-Wunused-variable]
     unsigned n=0;
              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testChEMBL_TxtALL_chembl_II_sets(double)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1121:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(test)/sizeof(test[0]); i++) {
                                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testChEMBL_TxtSLOW_chembl_II_sets(double)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1195:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(test)/sizeof(test[0]); i++)
                                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testChEMBLdatALL(double)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1312:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(test)/sizeof(test[0]); i++)
                                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testTarget_no_10188_30149()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1333:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testTarget_no_10188_49064()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1375:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testFileSDF_RandomSet_SMI(const char*, const char*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1415:24: warning: unused variable 'To' [-Wunused-variable]
     unsigned long long To = nanoClock();
                        ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testFileSDF_RandomSet(const char*, const char*)':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1559:26: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < iN; i++) {  // load random set
                          ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1557:16: warning: unused variable 'm' [-Wunused-variable]
         ROMol *m=0;
                ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1645:40: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for(int i=0; i < mols.size(); i++) {  // load random set
                                        ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1617:16: warning: unused variable 'm' [-Wunused-variable]
         ROMol *m=0;
                ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1464:24: warning: unused variable 'To' [-Wunused-variable]
     unsigned long long To = nanoClock();
                        ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp: In function 'void testGregSDFFileSetFiltered()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/testFMCS.cpp:1732:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for(int i=0; i<sizeof(sdf)/sizeof(sdf[0]); i++)
                                             ^
Linking CXX executable FMCStest
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/FMCStest.dir/testFMCS.cpp.o  -o FMCStest -rdynamic ../../../../lib/libFMCS.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 -lpthread ../../../../lib/libDepictor.so.1.2015.03.1 ../../../../lib/libChemTransforms.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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Scanning dependencies of target MolHash
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 46
[ 98%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash && /usr/bin/c++   -DMolHash_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/MolHash.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdFMCS.so -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libFMCS.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libDepictor.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libChemTransforms.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 98%] Built target rdFMCS
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
Scanning dependencies of target testInchi
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[ 98%] Building CXX object External/INCHI-API/CMakeFiles/testInchi.dir/test.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API && /usr/bin/c++   -DBUILD_INCHI_SUPPORT -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -I/usr/include/inchi    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testInchi.dir/test.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/test.cpp
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 98%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash && /usr/bin/c++   -DMolHash_EXPORTS -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/HashToString.cpp
Linking CXX executable testInchi
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API && /usr/bin/cmake -E cmake_link_script CMakeFiles/testInchi.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testInchi.dir/test.cpp.o  -o testInchi -rdynamic -linchi ../../lib/libRDInchiLib.so.1.2015.03.1 -linchi ../../lib/libFileParsers.so.1.2015.03.1 ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libDescriptors.so.1.2015.03.1 ../../lib/libDepictor.so.1.2015.03.1 ../../lib/libSubstructMatch.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 -lpthread ../../lib/libFileParsers.so.1.2015.03.1 ../../lib/libSmilesParse.so.1.2015.03.1 ../../lib/libPartialCharges.so.1.2015.03.1 ../../lib/libSubgraphs.so.1.2015.03.1 ../../lib/libGraphMol.so.1.2015.03.1 ../../lib/libRDGeometryLib.so.1.2015.03.1 ../../lib/libDataStructs.so.1.2015.03.1 ../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
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Scanning dependencies of target testReaction
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cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp
Linking CXX shared library ../../../lib/libMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,libMolHash.so.1 -o ../../../lib/libMolHash.so.1.2015.03.1 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libDescriptors.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libMolHash.so.1.2015.03.1 ../../../lib/libMolHash.so.1 ../../../lib/libMolHash.so
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make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
Scanning dependencies of target testReactionFingerprints
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make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 99%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp: In function 'void test44Github290()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp:4078:29: warning: unused variable 'rxn' [-Wunused-variable]
           ChemicalReaction *rxn = RxnFileToChemicalReaction(fName);
                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp: In function 'void test46Agents()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp:4229:12: warning: unused variable 'mol' [-Wunused-variable]
     ROMol *mol=0;
            ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp:4322:31: warning: unused variable 'which' [-Wunused-variable]
     unsigned int nWarn,nError,which;
                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp:4354:18: warning: unused variable 'nWarn' [-Wunused-variable]
     unsigned int nWarn,nError,which;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp:4354:24: warning: unused variable 'nError' [-Wunused-variable]
     unsigned int nWarn,nError,which;
                        ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction.cpp:4354:31: warning: unused variable 'which' [-Wunused-variable]
     unsigned int nWarn,nError,which;
                               ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp: In function 'void testStructuralFingerprintsReaction()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp:279:19: warning: unused variable 'nWarn' [-Wunused-variable]
      unsigned int nWarn,nError,which;
                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp:279:25: warning: unused variable 'nError' [-Wunused-variable]
      unsigned int nWarn,nError,which;
                         ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp:279:32: warning: unused variable 'which' [-Wunused-variable]
      unsigned int nWarn,nError,which;
                                ^
Linking CXX executable testReactionFingerprints
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o  -o testReactionFingerprints -rdynamic ../../../lib/libChemReactions.so.1.2015.03.1 ../../../lib/libDescriptors.so.1.2015.03.1 ../../../lib/libFingerprints.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libChemTransforms.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  97
[ 99%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
Scanning dependencies of target rdChemReactions
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make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 67
[100%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdChemReactions_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp
Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdChemReactions.so -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libChemReactions.so.1.2015.03.1 ../../../../lib/libChemTransforms.so.1.2015.03.1 ../../../../lib/libDescriptors.so.1.2015.03.1 ../../../../lib/libFingerprints.so.1.2015.03.1 ../../../../lib/libSubgraphs.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libDepictor.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libPartialCharges.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  67
[100%] Built target rdChemReactions
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target testMolHash
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash && /usr/bin/c++   -DRDK_64BIT_BUILD -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp: In function 'void RDKit::test1()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:48:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i<sizeof(smi)/sizeof(smi[0]); i++)
                                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:85:18: warning: unused variable 'passed' [-Wunused-variable]
             bool passed = 0 != res0 && res0 == res1 && res0 == res2 && res0 == res3;
                  ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp: In function 'void RDKit::test2()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:109:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < sizeof(smi)/sizeof(smi[0]); i++)
                                                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:125:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < HashNonChiral.size(); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:126:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for(int j=0; j < HashNonChiral.size(); j++)
                                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp: In function 'void RDKit::test21()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:148:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < sizeof(smi)/sizeof(smi[0]); i++)
                                                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:160:45: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < HashNonChiral.size(); i++)
                                             ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:161:49: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for(int j=0; j < HashNonChiral.size(); j++)
                                                 ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp: In function 'void RDKit::test3()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:187:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < sizeof(smi)/sizeof(smi[0]); i++)
                                                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:201:42: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < HashChiral.size(); i++)
                                          ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:202:46: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for(int j=0; j < HashChiral.size(); j++)
                                              ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp: In function 'void RDKit::test4()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:312:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < sizeof(smi)/sizeof(smi[0]); i++)
                                                   ^
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp: In function 'void RDKit::test5()':
/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash.cpp:338:51: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for(int i=0; i < sizeof(smi)/sizeof(smi[0]); i+=3)
                                                   ^
Linking CXX executable testMolHash
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testMolHash.dir/testMolHash.cpp.o  -o testMolHash -rdynamic ../../../lib/libMolHash.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libChemTransforms.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libDescriptors.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
Scanning dependencies of target rdMolHash
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap && /usr/bin/c++   -DRDK_64BIT_BUILD -DrdMolHash_EXPORTS -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG -fPIC -I/usr/include/python2.7 -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code    -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp
Linking CXX executable testReaction
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1
/usr/bin/c++   -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG   -Wl,-z,relro  CMakeFiles/testReaction.dir/testReaction.cpp.o  -o testReaction -rdynamic ../../../lib/libChemReactions.so.1.2015.03.1 ../../../lib/libChemTransforms.so.1.2015.03.1 ../../../lib/libDescriptors.so.1.2015.03.1 ../../../lib/libFingerprints.so.1.2015.03.1 ../../../lib/libSubgraphs.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libDepictor.so.1.2015.03.1 ../../../lib/libFileParsers.so.1.2015.03.1 ../../../lib/libSmilesParse.so.1.2015.03.1 ../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libPartialCharges.so.1.2015.03.1 ../../../lib/libGraphMol.so.1.2015.03.1 ../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../lib/libDataStructs.so.1.2015.03.1 ../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Built target testReaction
Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1
/usr/bin/c++  -fPIC -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches   -m64 -mtune=generic  -O2 -g -DNDEBUG  -Wl,-z,relro  -shared -Wl,-soname,rdMolHash.so -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libMolHash.so.1.2015.03.1 ../../../../lib/libDescriptors.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 ../../../../lib/libRDBoost.so.1.2015.03.1 -lpython2.7 -lboost_python-mt ../../../../lib/libPartialCharges.so.1.2015.03.1 ../../../../lib/libFileParsers.so.1.2015.03.1 ../../../../lib/libSmilesParse.so.1.2015.03.1 ../../../../lib/libSubgraphs.so.1.2015.03.1 ../../../../lib/libSubstructMatch.so.1.2015.03.1 ../../../../lib/libDepictor.so.1.2015.03.1 ../../../../lib/libGraphMol.so.1.2015.03.1 ../../../../lib/libRDGeometryLib.so.1.2015.03.1 ../../../../lib/libDataStructs.so.1.2015.03.1 ../../../../lib/libRDGeneral.so.1.2015.03.1 -lpthread -Wl,-rpath,/builddir/build/BUILD/rdkit-Release_2015_03_1/lib: 
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Built target rdMolHash
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 0
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2015_03_1/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2015_03_1
+ export RDBASE=/builddir/build/BUILD/rdkit-Release_2015_03_1
+ RDBASE=/builddir/build/BUILD/rdkit-Release_2015_03_1
+ make STATIC_LINK=0
cp rdkit.sql91.in rdkit--3.4.sql
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o rdkit_io.o rdkit_io.c 
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o mol_op.o mol_op.c 
In file included from mol_op.c:33:0:
mol_op.c: In function 'fmcs_mol2s_transition':
/usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
mol_op.c:375:22: note: in expansion of macro 'PG_GETARG_DATUM'
         CROMol mol = PG_GETARG_DATUM(1);
                      ^
/usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
mol_op.c:405:22: note: in expansion of macro 'PG_GETARG_DATUM'
         CROMol mol = PG_GETARG_DATUM(1);
                      ^
mol_op.c: In function 'fmcs_mol_transition':
/usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
mol_op.c:475:22: note: in expansion of macro 'PG_GETARG_DATUM'
         CROMol mol = PG_GETARG_DATUM(1);
                      ^
In file included from rdkit.h:39:0,
                 from mol_op.c:32:
mol_op.c:481:25: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
         PG_RETURN_INT32((int32)lst);
                         ^
/usr/include/pgsql/server/postgres.h:316:39: note: in definition of macro 'SET_4_BYTES'
 #define SET_4_BYTES(value) (((Datum) (value)) & 0xffffffff)
                                       ^
/usr/include/pgsql/server/fmgr.h:295:36: note: in expansion of macro 'Int32GetDatum'
 #define PG_RETURN_INT32(x)  return Int32GetDatum(x)
                                    ^
mol_op.c:481:9: note: in expansion of macro 'PG_RETURN_INT32'
         PG_RETURN_INT32((int32)lst);
         ^
In file included from mol_op.c:33:0:
/usr/include/pgsql/server/fmgr.h:221:29: warning: initialization makes pointer from integer without a cast [enabled by default]
 #define PG_GETARG_DATUM(n)  (fcinfo->arg[n])
                             ^
mol_op.c:486:22: note: in expansion of macro 'PG_GETARG_DATUM'
         CROMol mol = PG_GETARG_DATUM(1);
                      ^
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o bfp_op.o bfp_op.c 
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o sfp_op.o sfp_op.c 
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o rxn_op.o rxn_op.c 
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o rdkit_gist.o rdkit_gist.c 
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o low_gist.o low_gist.c 
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o guc.o guc.c 
gcc -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o cache.o cache.c 
g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -Wno-unused-function -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"' -I/usr/local/include -I/builddir/build/BUILD/rdkit-Release_2015_03_1/Code -DRDKITVER='"007300"'    -I. -I. -I/usr/include/pgsql/server -I/usr/include/pgsql/internal -D_GNU_SOURCE -I/usr/include/libxml2  -fPIC -c -o adapter.o adapter.cpp 
adapter.cpp: In function 'void* makeReactionDifferenceSFP(CChemicalReaction, int, int)':
adapter.cpp:1869:18: warning: unused variable 'fp' [-Wunused-variable]
  FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
                  ^
adapter.cpp: In function 'void* makeReactionBFP(CChemicalReaction, int, int)':
adapter.cpp:1892:20: warning: unused variable 'fp' [-Wunused-variable]
    FingerprintType fp = static_cast<RDKit::FingerprintType>(fpType);
                    ^
adapter.cpp: In function 'char* findMCSsmiles(char*, char*)':
adapter.cpp:1952:15: warning: unused variable 'nmols' [-Wunused-variable]
     int  len, nmols=0;
               ^
g++ -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -DLINUX_OOM_SCORE_ADJ=0 -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -fpic -shared -o rdkit.so rdkit_io.o mol_op.o bfp_op.o sfp_op.o rxn_op.o rdkit_gist.o low_gist.o guc.o cache.o adapter.o -L/usr/lib64 -Wl,-z,relro   -Wl,--as-needed  -L/builddir/build/BUILD/rdkit-Release_2015_03_1/lib -Wl,-rpath,'/builddir/build/BUILD/rdkit-Release_2015_03_1/lib'   -lMolHash -lFMCS -lChemReactions -lChemTransforms -lFileParsers -lSmilesParse -lFingerprints -lSubgraphs -lDescriptors -lPartialCharges -lSubstructMatch  -lGraphMol -lDataStructs -lDepictor -lRDGeometryLib -lRDGeneral -pthread  
+ chrpath -d rdkit.so
+ popd
~/build/BUILD/rdkit-Release_2015_03_1
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.DzuHUX
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64
++ dirname /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64
+ cd rdkit-Release_2015_03_1
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64
/usr/bin/cmake -H/builddir/build/BUILD/rdkit-Release_2015_03_1 -B/builddir/build/BUILD/rdkit-Release_2015_03_1 --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  49 50
[  2%] Built target RDGeneral
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/DataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  6 7 8
[  5%] Built target DataStructs
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  51
[  6%] Built target RDGeometryLib
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/GraphMol.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  34 35 36 37 38 39 40 41
[ 14%] Built target GraphMol
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 14%] Built target SubstructMatch
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  9
[ 15%] Built target Depictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  55 56 57
[ 18%] Built target SmilesParse
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/CMakeFiles/RDInchiLib.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f External/INCHI-API/CMakeFiles/RDInchiLib.dir/build.make External/INCHI-API/CMakeFiles/RDInchiLib.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `External/INCHI-API/CMakeFiles/RDInchiLib.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 18%] Built target RDInchiLib
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API && /usr/bin/cmake -E copy /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/python/inchi.py /builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/Chem/inchi.py
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 18%] Built target inchi_support
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  48
[ 19%] Built target PartialCharges
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  16 17 18 19 20 21
[ 25%] Built target FileParsers
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  58
[ 26%] Built target Subgraphs
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'.
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  10 11
[ 28%] Built target Descriptors
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/CMakeFiles/testInchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f External/INCHI-API/CMakeFiles/testInchi.dir/build.make External/INCHI-API/CMakeFiles/testInchi.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `External/INCHI-API/CMakeFiles/testInchi.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 28%] Built target testInchi
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDBoost /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 28%] Built target RDBoost
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build.make External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `External/INCHI-API/Wrap/CMakeFiles/rdinchi.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 28%] Built target rdinchi
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/RDGeneral/CMakeFiles/testDict.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  89
[ 29%] Built target testDict
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDBoost/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 29%] Built target rdBase
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/DataStructs/CMakeFiles/testDataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  88
[ 30%] Built target testDataStructs
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  59 60 61
[ 33%] Built target cDataStructs
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/testGrid.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 33%] Built target testGrid
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Geometry/CMakeFiles/testTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 33%] Built target testTransforms
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  70
[ 34%] Built target rdGeometry
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Numerics/CMakeFiles/testMatrices.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  93
[ 35%] Built target testMatrices
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 35%] Built target Alignment
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  87
[ 36%] Built target testAlignment
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 36%] Built target rdAlignment
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/EigenSolvers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  14
[ 37%] Built target EigenSolvers
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  47
[ 38%] Built target Optimizer
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 38%] Built target testOptimizer
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ForceField/CMakeFiles/ForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  24 25 26 27 28 29 30
[ 45%] Built target ForceField
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  31
[ 46%] Built target ForceFieldHelpers
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 46%] Built target MolTransforms
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 46%] Built target testUFFForceField
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 46%] Built target MolAlign
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/DistGeom/CMakeFiles/DistGeometry.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  13
[ 47%] Built target DistGeometry
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  12
[ 48%] Built target DistGeomHelpers
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  92
[ 49%] Built target testMMFFForceField
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  69
[ 50%] Built target rdForceField
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/DistGeom/CMakeFiles/testDistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 50%] Built target testDistGeom
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 50%] Built target DistGeom
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Catalogs /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Catalogs/CMakeFiles/Catalogs.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  1
[ 51%] Built target Catalogs
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  62
[ 52%] Built target graphmolIterTest
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 52%] Built target graphmolMemTest1
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 52%] Built target graphmolMolOpsTest
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  63
[ 53%] Built target graphmolTest1
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 53%] Built target graphmolcpTest
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 53%] Built target graphmolqueryTest
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  64
[ 54%] Built target graphmoltestCanon
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 54%] Built target graphmoltestChirality
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 54%] Built target graphmoltestPickler
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/CMakeFiles/hanoiTest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  65
[ 55%] Built target hanoiTest
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  5
[ 56%] Built target ChemTransforms
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 56%] Built target testDepictor
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  68
[ 57%] Built target rdDepictor
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 57%] Built target smaTest1
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 57%] Built target smiTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 57%] Built target fileParsersTest1
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 57%] Built target testMol2ToMol
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 57%] Built target testMolSupplier
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 57%] Built target testMolWriter
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  99
[ 58%] Built target testTplParser
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 58%] Built target testSubstructMatch
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  22 23
[ 60%] Built target Fingerprints
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  2 3 4
[ 63%] Built target ChemReactions
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 63%] Built target testReaction
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  97
[ 64%] Built target testReactionFingerprints
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  67
[ 65%] Built target rdChemReactions
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 65%] Built target testChemTransforms
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  98
[ 66%] Built target testSubgraphs1
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 66%] Built target testSubgraphs2
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  32 33
[ 68%] Built target FragCatalog
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  91
[ 69%] Built target testFragCatalog
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  80 81
[ 71%] Built target rdfragcatalog
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 71%] Built target testDescriptors
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  74
[ 72%] Built target rdMolDescriptors
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 72%] Built target testFingerprints
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  96
[ 73%] Built target testPartialCharges
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 73%] Built target rdPartialCharges
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  95
[ 74%] Built target testMolTransforms
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  75
[ 75%] Built target rdMolTransforms
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 75%] Built target testMMFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  100
[ 76%] Built target testUFFForceFieldHelpers
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 76%] Built target rdForceFieldHelpers
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 76%] Built target testDistGeomHelpers
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 76%] Built target rdDistGeom
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 76%] Built target testMolAlign
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  72
[ 77%] Built target rdMolAlign
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  44
[ 78%] Built target MolChemicalFeatures
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 78%] Built target testFeatures
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  73
[ 79%] Built target rdMolChemicalFeatures
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 79%] Built target ShapeHelpers
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 79%] Built target testShapeHelpers
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 79%] Built target rdShapeHelpers
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  43
[ 80%] Built target MolCatalog
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  94
[ 81%] Built target testMolCatalog
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 81%] Built target rdMolCatalog
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  45
[ 82%] Built target MolDraw2D
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  66
[ 83%] Built target moldraw2DTest1
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 83%] Built target rdMolDraw2D
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  15
[ 84%] Built target FMCS
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  90
[ 85%] Built target testFMCS
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 85%] Built target rdFMCS
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 85%] Built target FMCStest
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  46
[ 86%] Built target MolHash
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 86%] Built target testMolHash
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 86%] Built target rdMolHash
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  52 53
[ 88%] Built target SLNParse
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 88%] Built target testSLNParse
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 88%] Built target rdSLNParse
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  77 78 79
[ 91%] Built target rdchem
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'.
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  82 83 84
[ 94%] Built target rdmolfiles
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  85
[ 95%] Built target rdmolops
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  86
[ 96%] Built target rdqueries
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Query /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Query /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/Query/CMakeFiles/testQuery.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 96%] Built target testQuery
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 96%] Built target testMatCalc
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 96%] Built target rdMetricMatrixCalc
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 96%] Built target hc
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  54
[ 97%] Built target SimDivPickers
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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[ 98%] Built target rdSimDivPickers
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[ 98%] Built target Clustering
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  42
[ 99%] Built target InfoTheory
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles  71
[100%] Built target rdInfoTheory
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ML/Data/CMakeFiles/cQuantize.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Built target cQuantize
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
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make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Built target ChemicalFeatures
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Built target testChemicalFeatures
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
cd /builddir/build/BUILD/rdkit-Release_2015_03_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1 /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color=
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build
make[2]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[2]: Nothing to be done for `Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'.
make[2]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_report /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 
[100%] Built target rdChemicalFeatures
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
/usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/rdkit-Release_2015_03_1/CMakeFiles 0
make -f CMakeFiles/Makefile2 preinstall
make[1]: Entering directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
make[1]: Nothing to be done for `preinstall'.
make[1]: Leaving directory `/builddir/build/BUILD/rdkit-Release_2015_03_1'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "RelWithDebInfo"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-targets.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-targets-relwithdebinfo.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-config.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/cmake/rdkit-config-version.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/CTestTestfile.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/cmake_install.cmake
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Makefile
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test3.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test2.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/test1.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/spiral.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/retest.txt
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/listutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/fileutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/comhack.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemutils.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemdraw_qax.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/chemdraw.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/cactvs.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/utils/12h.gif
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/six.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/epydoc.config
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/_py2_pickle.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Transform.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Supply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/Output.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/demo.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/__init__.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/ForceField/MMFF/Params.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/ChiralSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/ChiralViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/DistGeomUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/DistViolationContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/FourthDimContrib.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/DistGeom/TriangleSmooth.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libCatalogs.so.1.2015.03.1
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/Catalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Catalogs/CatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libGraphMol.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libGraphMol.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libGraphMol.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Atom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/atomic_data.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/AtomIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Bond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/BondIterators.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Chirality.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Conformer.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/details.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/GraphMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/PeriodicTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryAtom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryBond.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/QueryOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RDKitBase.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RDKitQueries.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RingInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Rings.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ROMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/RWMol.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SanitException.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MonomerInfo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/new_canon.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDepictor.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDepictor.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDepictor.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSmilesParse.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSmilesParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSmilesParse.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/primes.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFileParsers.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFileParsers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFileParsers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSubstructMatch.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSubstructMatch.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSubstructMatch.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemReactions.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemReactions.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemReactions.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDistGeomHelpers.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDistGeomHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDistGeomHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDistGeom.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolAlign.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolAlign.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolAlign.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolChemicalFeatures.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolChemicalFeatures.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libShapeHelpers.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libShapeHelpers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libShapeHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolCatalog.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolCatalog.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolCatalog.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToCairo.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/DrawingToSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolDrawing/MolDrawing.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/MolDraw2D.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/MolDraw2DSVG.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/MolDraw2Dwx.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolDraw2D.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolDraw2D.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolDraw2D.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFMCS.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFMCS.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFMCS.so
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-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/FMCS.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/Graph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/Seed.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SeedSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/MatchTable.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolHash.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolHash.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolHash.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolHash.so.1.2015.03.1"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/MolHash/MolHash.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSLNParse.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSLNParse.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSLNParse.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSLNParse.so.1.2015.03.1"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/AndQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/EqualityQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/GreaterEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/GreaterQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/LessEqualQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/LessQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/OrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/Query.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/QueryObjects.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/RangeQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/SetQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Query/XOrQuery.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/Features/Feature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSimDivPickers.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSimDivPickers.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSimDivPickers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSimDivPickers.so.1.2015.03.1"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/DistPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/SimDivPickers/MaxMinPicker.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libhc.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libhc.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libhc.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libInfoTheory.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libInfoTheory.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libInfoTheory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libInfoTheory.so.1.2015.03.1"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so"
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemicalFeatures.so.1.2015.03.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemicalFeatures.so.1
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemicalFeatures.so
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h
-- Installing: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
-- Removed runtime path from "/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so"
-- Up-to-date: /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/RDPaths.py
+ pushd Code/PgSQL/rdkit
~/build/BUILD/rdkit-Release_2015_03_1/Code/PgSQL/rdkit ~/build/BUILD/rdkit-Release_2015_03_1
+ make install DESTDIR=/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/pgsql'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/pgsql/extension'
/usr/bin/mkdir -p '/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/pgsql/extension'
/bin/sh /usr/lib64/pgsql/pgxs/src/makefiles/../../config/install-sh -c -m 755  rdkit.so '/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/pgsql/rdkit.so'
/bin/sh /usr/lib64/pgsql/pgxs/src/makefiles/../../config/install-sh -c -m 644 ./rdkit.control '/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/pgsql/extension/'
/bin/sh /usr/lib64/pgsql/pgxs/src/makefiles/../../config/install-sh -c -m 644 ./rdkit--3.4.sql  '/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/pgsql/extension/'
+ popd
~/build/BUILD/rdkit-Release_2015_03_1
+ rm /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64//usr/share/RDKit/README /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64//usr/share/RDKit/license.txt
+ chmod a+x /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/RDKit/Contrib/M_Kossner/Frames.py
++ find /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64//usr/src -type f -perm /a+x
find: '/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64//usr/src': No such file or directory
+ /usr/lib/rpm/find-debuginfo.sh --strict-build-id -m --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 /builddir/build/BUILD/rdkit-Release_2015_03_1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/pgsql/rdkit.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemicalFeatures.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libInfoTheory.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libhc.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSimDivPickers.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSLNParse.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolHash.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFMCS.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolDraw2D.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolCatalog.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libShapeHelpers.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolChemicalFeatures.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolAlign.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDistGeomHelpers.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libForceFieldHelpers.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libMolTransforms.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libPartialCharges.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFingerprints.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDescriptors.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFragCatalog.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSubgraphs.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemTransforms.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libChemReactions.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSubstructMatch.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libFileParsers.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libSmilesParse.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDepictor.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libGraphMol.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libCatalogs.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDistGeometry.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libForceField.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libOptimizer.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libEigenSolvers.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libAlignment.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libRDGeometryLib.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libDataStructs.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libRDBoost.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libRDGeneral.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/libRDInchiLib.so.1.2015.03.1
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/rdBase.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolfiles.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdqueries.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdmolops.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdchem.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdSLNParse.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolHash.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdFMCS.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolAlign.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDistGeom.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdChemReactions.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdDepictor.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/rdinchi.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ForceField/rdForceField.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Geometry/rdGeometry.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/Data/cQuantize.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/Numerics/rdAlignment.so
extracting debug info from /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so
/usr/lib/rpm/sepdebugcrcfix: Updated 72 CRC32s, 0 CRC32s did match.
symlinked /usr/lib/debug/usr/lib64/libChemicalFeatures.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libChemicalFeatures.so.debug
symlinked /usr/lib/debug/usr/lib64/libChemicalFeatures.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libChemicalFeatures.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libInfoTheory.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libInfoTheory.so.debug
symlinked /usr/lib/debug/usr/lib64/libInfoTheory.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libInfoTheory.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libhc.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libhc.so.debug
symlinked /usr/lib/debug/usr/lib64/libhc.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libhc.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libSimDivPickers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSimDivPickers.so.debug
symlinked /usr/lib/debug/usr/lib64/libSimDivPickers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSimDivPickers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libSLNParse.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSLNParse.so.debug
symlinked /usr/lib/debug/usr/lib64/libSLNParse.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSLNParse.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libMolHash.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolHash.so.debug
symlinked /usr/lib/debug/usr/lib64/libMolHash.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolHash.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libFMCS.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libFMCS.so.debug
symlinked /usr/lib/debug/usr/lib64/libFMCS.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libFMCS.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libMolDraw2D.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolDraw2D.so.debug
symlinked /usr/lib/debug/usr/lib64/libMolDraw2D.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolDraw2D.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libMolCatalog.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libMolCatalog.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libShapeHelpers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libShapeHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libShapeHelpers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libShapeHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libMolChemicalFeatures.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolChemicalFeatures.so.debug
symlinked /usr/lib/debug/usr/lib64/libMolChemicalFeatures.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolChemicalFeatures.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libMolAlign.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolAlign.so.debug
symlinked /usr/lib/debug/usr/lib64/libMolAlign.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolAlign.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libDistGeomHelpers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDistGeomHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libDistGeomHelpers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDistGeomHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libForceFieldHelpers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libForceFieldHelpers.so.debug
symlinked /usr/lib/debug/usr/lib64/libForceFieldHelpers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libForceFieldHelpers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libMolTransforms.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolTransforms.so.debug
symlinked /usr/lib/debug/usr/lib64/libMolTransforms.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libMolTransforms.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libPartialCharges.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libPartialCharges.so.debug
symlinked /usr/lib/debug/usr/lib64/libPartialCharges.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libPartialCharges.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libFingerprints.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libFingerprints.so.debug
symlinked /usr/lib/debug/usr/lib64/libFingerprints.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libFingerprints.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libDescriptors.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDescriptors.so.debug
symlinked /usr/lib/debug/usr/lib64/libDescriptors.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDescriptors.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libFragCatalog.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libFragCatalog.so.debug
symlinked /usr/lib/debug/usr/lib64/libFragCatalog.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libFragCatalog.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libSubgraphs.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSubgraphs.so.debug
symlinked /usr/lib/debug/usr/lib64/libSubgraphs.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSubgraphs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libChemTransforms.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libChemTransforms.so.debug
symlinked /usr/lib/debug/usr/lib64/libChemTransforms.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libChemTransforms.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libChemReactions.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libChemReactions.so.debug
symlinked /usr/lib/debug/usr/lib64/libChemReactions.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libChemReactions.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libSubstructMatch.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSubstructMatch.so.debug
symlinked /usr/lib/debug/usr/lib64/libSubstructMatch.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSubstructMatch.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libFileParsers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libFileParsers.so.debug
symlinked /usr/lib/debug/usr/lib64/libFileParsers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libFileParsers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libSmilesParse.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSmilesParse.so.debug
symlinked /usr/lib/debug/usr/lib64/libSmilesParse.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libSmilesParse.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libDepictor.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDepictor.so.debug
symlinked /usr/lib/debug/usr/lib64/libDepictor.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDepictor.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libGraphMol.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libGraphMol.so.debug
symlinked /usr/lib/debug/usr/lib64/libGraphMol.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libGraphMol.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libCatalogs.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libCatalogs.so.debug
symlinked /usr/lib/debug/usr/lib64/libCatalogs.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libCatalogs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libDistGeometry.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDistGeometry.so.debug
symlinked /usr/lib/debug/usr/lib64/libDistGeometry.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDistGeometry.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libForceField.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libForceField.so.debug
symlinked /usr/lib/debug/usr/lib64/libForceField.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libForceField.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libOptimizer.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libOptimizer.so.debug
symlinked /usr/lib/debug/usr/lib64/libOptimizer.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libOptimizer.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libEigenSolvers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libEigenSolvers.so.debug
symlinked /usr/lib/debug/usr/lib64/libEigenSolvers.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libEigenSolvers.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libAlignment.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libAlignment.so.debug
symlinked /usr/lib/debug/usr/lib64/libAlignment.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libAlignment.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDGeometryLib.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libRDGeometryLib.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDGeometryLib.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libRDGeometryLib.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libDataStructs.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDataStructs.so.debug
symlinked /usr/lib/debug/usr/lib64/libDataStructs.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libDataStructs.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDBoost.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libRDBoost.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDBoost.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libRDBoost.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDGeneral.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libRDGeneral.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDGeneral.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libRDGeneral.so.1.debug
symlinked /usr/lib/debug/usr/lib64/libRDInchiLib.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libRDInchiLib.so.debug
symlinked /usr/lib/debug/usr/lib64/libRDInchiLib.so.1.2015.03.1.debug to /usr/lib/debug/usr/lib64/libRDInchiLib.so.1.debug
9044 blocks
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib/debug/usr/lib64/python2.7 using /usr/bin/python2.7
Bytecompiling .py files below /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/lib64/python2.7 using /usr/bin/python2.7
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-java-repack-jars
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.ilZ6Xl
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2015_03_1
+ export RDBASE=/builddir/build/BUILD/rdkit-Release_2015_03_1
+ RDBASE=/builddir/build/BUILD/rdkit-Release_2015_03_1
+ export LD_LIBRARY_PATH=/builddir/build/BUILD/rdkit-Release_2015_03_1/lib
+ LD_LIBRARY_PATH=/builddir/build/BUILD/rdkit-Release_2015_03_1/lib
+ export PYTHONPATH=/builddir/build/BUILD/rdkit-Release_2015_03_1
+ PYTHONPATH=/builddir/build/BUILD/rdkit-Release_2015_03_1
+ ARGS=-V
+ make test
Running tests...
/usr/bin/ctest --force-new-ctest-process -V
UpdateCTestConfiguration  from :/builddir/build/BUILD/rdkit-Release_2015_03_1/DartConfiguration.tcl
UpdateCTestConfiguration  from :/builddir/build/BUILD/rdkit-Release_2015_03_1/DartConfiguration.tcl
Test project /builddir/build/BUILD/rdkit-Release_2015_03_1
Constructing a list of tests
Done constructing a list of tests
Checking test dependency graph...
Checking test dependency graph end
test 1
      Start  1: testInchi
1: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/External/INCHI-API/testInchi
1: Test timeout computed to be: 9.99988e+06
1: [11:33:43] -------------------------------------
1: [11:33:43] testing github issue 3: bad inchis when mol has no stereoinfo
1: [11:33:43] done
1: [11:33:43] -------------------------------------
1: [11:33:43] testing a consequence of the fix for github issue 8: bad mols from some inchis
1: [11:33:43] done
1: [11:33:43] -------------------------------------
1: [11:33:43] testing github issue 40: bad MWs from inchis
1: [11:33:43] done
1: [11:33:43] -------------------------------------
1: [11:33:43] testing github issue 67: seg fault from inchi
1: [11:33:43] Extended double-bond stereochemistry (e.g. C=C=C=C) ignored
1: [11:33:43] done
1: [11:33:43] -------------------------------------
1: [11:33:43] testing github issue 68: hang while reading InChI
1: [11:33:43]   parse 1:
1: [11:33:43]   done
1: [11:33:43]   parse 2:
1: [11:33:43]   done
1: [11:33:43] done
1: [11:33:43] -------------------------------------
1: [11:33:43] testing github issue 296: problems with chiral S and inchi
1: [11:33:43] done
1: [11:33:43] -------------------------------------
1: [11:33:43] testing github issue 437: problems with InChI and ring stereochemistry
1: [11:33:43] done
 1/91 Test  #1: testInchi ........................   Passed    0.07 sec
test 2
      Start  2: testDict
2: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/RDGeneral/testDict
2: Test timeout computed to be: 9.99988e+06
2: [11:33:43] dict test
2: [11:33:43] -------------------------------------
2: [11:33:43] Testing String Pickle Roundtrips.
2: [11:33:43] 	done
2: [11:33:43] -------------------------------------
2: [11:33:43] Testing conversion of vect to string.
2: [11:33:43] 	done
2: [11:33:43] -------------------------------------
2: [11:33:43] Testing returning const references.
2: [11:33:43] any cast
2: [11:33:43] done: 0 300000
2: [11:33:43] copy
2: [11:33:43] done: 0.01 300000
2: [11:33:43] ref
2: [11:33:43] done: 0.01 300000
2: [11:33:43] dict
2: [11:33:43] done: 0.02 300000
2: [11:33:43] ref with hasVal
2: [11:33:43] done: 0 300000
2: [11:33:43] 	done
 2/91 Test  #2: testDict .........................   Passed    0.06 sec
test 3
      Start  3: testDataStructs
3: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/testDataStructs
3: Test timeout computed to be: 9.99988e+06
3: [11:33:43] pass
3: [11:33:43] v3 4
3: [11:33:43] v4 5
3: [11:33:43]  SPARSE -----------------------------------
3: [11:33:43] Set 10: 0
3: [11:33:43] Set 11: 0
3: [11:33:43] Set 14: 0
3: [11:33:43] Set 10: 1
3: [11:33:43] Get 14: 1
3: [11:33:43] Num: 20
3: [11:33:43] NumOn: 3
3: [11:33:43] NumOff: 17
3: 10, 11, 14, 
3: [11:33:43] t2[19]: 0
3: [11:33:43] t2[14]: 1
3: [11:33:43] t2[19]: 0
3: [11:33:43] t2[14]: 0
3: t1: 10, 11, 14, 
3: t2: 10, 11, 15, 17, 
3: t1|t2: 10, 11, 14, 15, 17, 
3: t1&t2: 10, 11, 
3: t1^t2: 14, 15, 17, 
3: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
3:  except 
3: [11:33:43]  Explicit ----------------------------------
3: [11:33:43] Set 10: 0
3: [11:33:43] Set 11: 0
3: [11:33:43] Set 14: 0
3: [11:33:43] Set 10: 1
3: [11:33:43] Get 14: 1
3: [11:33:43] Num: 20
3: [11:33:43] NumOn: 3
3: [11:33:43] NumOff: 17
3: 10, 11, 14, 
3: [11:33:43] t2[19]: 0
3: [11:33:43] t2[14]: 1
3: [11:33:43] t2[19]: 0
3: [11:33:43] t2[14]: 0
3: t1: 10, 11, 14, 
3: t2: 10, 11, 15, 17, 
3: t1|t2: 10, 11, 14, 15, 17, 
3: t1&t2: 10, 11, 
3: t1^t2: 14, 15, 17, 
3: ~t1: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 12, 13, 15, 16, 17, 18, 19, 
3:  except 
3: [11:33:43]  Done
3: [11:33:43]  Test DiscreteValue Vectors 1 ----------------------------
3: [11:33:43] Expected failure: Value out of range
3: [11:33:43] Expected failure: Value out of range
3: [11:33:43] Expected failure: Value out of range
3: [11:33:43] Expected failure: Value out of range
3: [11:33:43] Expected failure: Value out of range
3: [11:33:43]  Test DiscreteValue Vectors 2 ------------------------------
3: [11:33:43]  Test DiscreteValue Vectors 3 ---------------------------
3: [11:33:43]  Test DiscreteValue Operations -----------------------------
3: [11:33:43]  Test DiscreteValue Operations 2 -------------------------- 
3: [11:33:43]  Test SparseIntVect  ------------------------------------
3: [11:33:43]  Test SparseIntVect Serialization  --------------------------
3: [11:33:43]  Test BitVect Serialization  -------------------------------
3: [11:33:43]  Test BitVect to FPS  -------------------------------
3: [11:33:43]  Test BitVect to binary string  -------------------------------
3: [11:33:43]  Test Similarity Measures BitVect -------------------------------
3: [11:33:43]  Test Similarity Measures SparseBitVect -------------------------------
3: [11:33:43]  Test BitVect with all ones -------------------------------
3: [11:33:43]  Test Explicit BitVects: Concatenation Operation  -------------------------------
 3/91 Test  #3: testDataStructs ..................   Passed    0.01 sec
test 4
      Start  4: pyBV
4: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/testBV.py"
4: Test timeout computed to be: 9.99988e+06
4: .............
4: ----------------------------------------------------------------------
4: Ran 13 tests in 0.751s
4: 
4: OK
 4/91 Test  #4: pyBV .............................   Passed    0.96 sec
test 5
      Start  5: pyDiscreteValueVect
5: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/testDiscreteValueVect.py"
5: Test timeout computed to be: 9.99988e+06
5: ......
5: ----------------------------------------------------------------------
5: Ran 6 tests in 0.002s
5: 
5: OK
 5/91 Test  #5: pyDiscreteValueVect ..............   Passed    0.12 sec
test 6
      Start  6: pySparseIntVect
6: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataStructs/Wrap/testSparseIntVect.py"
6: Test timeout computed to be: 9.99988e+06
6: ........
6: ----------------------------------------------------------------------
6: Ran 8 tests in 0.006s
6: 
6: OK
 6/91 Test  #6: pySparseIntVect ..................   Passed    0.11 sec
test 7
      Start  7: testTransforms
7: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/testTransforms
7: Test timeout computed to be: 9.99988e+06
7: ****************************************
7: testPointND
7: ****************************************
7: testPointOps3D
7: ****************************************
7: testPointOps2D
7: ****************************************
7: test12D
7: ref1: 0.247341 1.70955  ref2: 0.744857 1.8679 
7: pt1: 3.23725 0.603708  pt2: 2.2552 3.87169 
7: ****************************************
7: test23D
7: ****************************************
7: test3MatMultiply
7: Pt1: 1 0 0  Pt2: 2 0 0 
7: -Pt1: -1 -0 -0 
7: tp1: 0 0 0  tp2: 0 0 0 
7: tp1: 0 0 0  tp2: 0 0 0 
7: tp1: 0 0 3  tp2: 0 0 3 
7: npt1: 0 0 3  npt2: 0 0 4 
7: Pt1: 0 0 3  Pt2: 6.12323e-17 0 4 
7: ****************************************
7: testFromQuaternion
7: ****************************************
 7/91 Test  #7: testTransforms ...................   Passed    0.00 sec
test 8
      Start  8: testGrid
8: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/testGrid
8: Test timeout computed to be: 9.99988e+06
8: ***********************************************************
8: Testing Grid
8: 	---------------------------------
8: 	 testUniformGrid1 
8: 
8: 	---------------------------------
8: 	 testUniformGrid2 
8: 
8: 	---------------------------------
8: 	 testUniformGridPickling 
8: 
8: 	---------------------------------
8: 	 testGridOps 
8: 
8: 	---------------------------------
8: 	 testUniformGridIndexing 
8: 
 8/91 Test  #8: testGrid .........................   Passed    0.01 sec
test 9
      Start  9: testPyGeometry
9: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Geometry/Wrap/testGeometry.py"
9: Test timeout computed to be: 9.99988e+06
9: ..........
9: ----------------------------------------------------------------------
9: Ran 10 tests in 0.013s
9: 
9: OK
9: Testing Geometry wrapper
 9/91 Test  #9: testPyGeometry ...................   Passed    0.11 sec
test 10
      Start 10: testMatrices
10: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/testMatrices
10: Test timeout computed to be: 9.99988e+06
10: [11:33:44] -----------------------------------------
10: [11:33:44] Testing RDNumerics: vectors and matrices Code
10: [11:33:44] ---------------------------------------
10: [11:33:44] 	 test1Vector
10: [11:33:44] ---------------------------------------
10: [11:33:44] 	 test2Matrix
10: [11:33:44] ---------------------------------------
10: [11:33:44] 	 test3SquareMatrix
10: [11:33:44] ---------------------------------------
10: [11:33:44] 	 test4SymmMatrix
10/91 Test #10: testMatrices .....................   Passed    0.00 sec
test 11
      Start 11: testAlignment
11: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/testAlignment
11: Test timeout computed to be: 9.99988e+06
11: -----------------------------------------
11: Testing Alignment Code
11: ---------------------------------------
11: 	 testBasic
11: ---------------------------------------
11: 	 testTriangle
11: ---------------------------------------
11: 	 testFourPts
11: ---------------------------------------
11: 	 testReflection
11: ---------------------------------------
11/91 Test #11: testAlignment ....................   Passed    0.00 sec
test 12
      Start 12: pyAlignment
12: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Alignment/Wrap/testAlignment.py"
12: Test timeout computed to be: 9.99988e+06
12: .....
12: ----------------------------------------------------------------------
12: Ran 5 tests in 0.001s
12: 
12: OK
12: Testing Alignment Wrapper code:
12/91 Test #12: pyAlignment ......................   Passed    0.09 sec
test 13
      Start 13: testOptimizer
13: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/testOptimizer
13: Test timeout computed to be: 9.99988e+06
13: -------------------------------------
13: Testing linear search.
13:   done
13: -------------------------------------
13: Testing BFGS optimization.
13:   done
13/91 Test #13: testOptimizer ....................   Passed    0.00 sec
test 14
      Start 14: testUFFForceField
14: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/UFF/testUFFForceField
14: Test timeout computed to be: 9.99988e+06
14: -------------------------------------
14: Unit tests for force field basics.
14:   done
14: -------------------------------------
14: Unit tests for basics of UFF bond-stretch terms.
14:   done
14: -------------------------------------
14: Unit tests for UFF bond-stretch terms.
14:   done
14: -------------------------------------
14: Unit tests for basics of UFF angle terms.
14:   done
14: -------------------------------------
14: Unit tests for UFF angle-bend terms.
14: theta = 3.14159; theta0 = 3.14159
14: theta = 2.094395, param1.theta0 = 2.094395
14:   done
14: -------------------------------------
14:  Test Simple UFF molecule optimizations.
14:   done
14: -------------------------------------
14: Unit tests for UFF nonbonded terms.
14:   done
14: -------------------------------------
14:  Test UFF torsional terms.
14:   done
14: -------------------------------------
14:  Test UFF Parameter objects
14: -------------------------------------
14:  Test Simple UFF molecule optimization, part 2.
14:   done
14: -------------------------------------
14:  Test UFF Torsion Conflicts.
14: C 0.4783 -0.7477 -0.0753 
14: C -0.5465 -0.0176 0.3519 
14: C -0.5114 1.4472 0.0870 
14: H -1.5201 -0.4838 0.2485 
14: H 0.4696 1.8363 0.3367 
14: O -1.2618 1.9423 0.6934 
14: F -0.7163 1.6298 -0.9622 
14:   done
14: -------------------------------------
14: Unit tests for UFF distance constraint terms.
14:   done
14: -------------------------------------
14: Unit tests for all UFF constraint terms.
14:   done
14: -------------------------------------
14: Unit tests for copying UFF ForceFields.
14:   done
14/91 Test #14: testUFFForceField ................   Passed    0.07 sec
test 15
      Start 15: testMMFFForceField
15: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/testMMFFForceField
15: Test timeout computed to be: 9.99988e+06
15: -------------------------------------
15: Official MMFF validation suite.
15: 
15: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/test_data/MMFF94_dative.sdf...
15: Checking against /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
15: All 191 tests passed
15: 
15: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.sdf...
15: Checking against /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
15: All 191 tests passed
15: 
15: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/test_data/MMFF94_dative.smi...
15: Checking against /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
15: All 191 tests passed
15: 
15: Computing MMFF94 energies for /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/test_data/MMFF94_hypervalent.smi...
15: Checking against /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/MMFF/test_data/MMFF94_reference.log...
15: All 191 tests passed
15:   done
15: -------------------------------------
15: Unit tests for all MMFF constraint terms.
15:   done
15: -------------------------------------
15: Unit tests for copying MMFF ForceFields.
15:   done
15/91 Test #15: testMMFFForceField ...............   Passed   15.17 sec
test 16
      Start 16: pyForceFieldConstraints
16: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ForceField/Wrap/testConstraints.py"
16: Test timeout computed to be: 9.99988e+06
16: ...[11:34:00] 
16: 
16: ****
16: Invariant Violation
16: bad direction in linearSearch
16: Violation occurred on line 216 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/BFGSOpt.h
16: Failed Expression: status>=0
16: ****
16: 
16: ......[11:34:00] 
16: 
16: ****
16: Invariant Violation
16: bad direction in linearSearch
16: Violation occurred on line 216 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Numerics/Optimizer/BFGSOpt.h
16: Failed Expression: status>=0
16: ****
16: 
16: ...
16: ----------------------------------------------------------------------
16: Ran 12 tests in 0.528s
16: 
16: OK
16/91 Test #16: pyForceFieldConstraints ..........   Passed    0.63 sec
test 17
      Start 17: testDistGeom
17: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/testDistGeom
17: Test timeout computed to be: 9.99988e+06
17: ***********************************************************
17:    test1 
17: ***********************************************************
17:    testIssue216 
17: Rows: 4 Columns: 4
17:       0      1      1      1
17:       1      0      1      1
17:       1      1      0      1
17:       1      1      1      0
17: ***********************************************************
17: 
17/91 Test #17: testDistGeom .....................   Passed    0.01 sec
test 18
      Start 18: pyDistGeom
18: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DistGeom/Wrap/rough_test.py"
18: Test timeout computed to be: 9.99988e+06
18: ......
18: ----------------------------------------------------------------------
18: Ran 6 tests in 0.001s
18: 
18: OK
18/91 Test #18: pyDistGeom .......................   Passed    0.13 sec
test 19
      Start 19: graphmolTest1
19: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmolTest1
19: Test timeout computed to be: 9.99988e+06
19: [11:34:00] -----------------------
19:  Testing Atom and Bond Property Caches
19: [11:34:00] Finished
19: [11:34:00] -----------------------
19:  Testing Mol Property Caches
19: [11:34:00] Finished
19: [11:34:00] -----------------------
19:  Testing Atom Property Caches
19: [11:34:00] Finished
19: [11:34:00] -----------------------
19:  Testing Bond Property Caches
19: [11:34:00] Finished
19: [11:34:00] -----------------------
19:  Testing Misc Properties
19: [11:34:00] Finished
19: [11:34:00] -----------------------
19:  Testing degree operations
19: [11:34:00] Finished
19: [11:34:00] -------------------------------------
19: [11:34:00] Testing Issue 1993296
19: [11:34:00] 
19: 
19: ****
19: Pre-condition Violation
19: bond already exists
19: Violation occurred on line 222 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RWMol.cpp
19: Failed Expression: !(boost::edge(atomIdx1,atomIdx2,d_graph).second)
19: ****
19: 
19: [11:34:00] 
19: 
19: ****
19: Pre-condition Violation
19: bond already exists
19: Violation occurred on line 222 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RWMol.cpp
19: Failed Expression: !(boost::edge(atomIdx1,atomIdx2,d_graph).second)
19: ****
19: 
19: [11:34:00] 
19: 
19: ****
19: Pre-condition Violation
19: attempt to add self-bond
19: Violation occurred on line 221 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/RWMol.cpp
19: Failed Expression: atomIdx1!=atomIdx2
19: ****
19: 
19: [11:34:00] 
19: 
19: ****
19: Pre-condition Violation
19: bond already exists
19: Violation occurred on line 367 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ROMol.cpp
19: Failed Expression: !(boost::edge(bond_pin->getBeginAtomIdx(), bond_pin->getEndAtomIdx(),d_graph).second)
19: ****
19: 
19: [11:34:00] 
19: 
19: ****
19: Pre-condition Violation
19: attempt to add self-bond
19: Violation occurred on line 365 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ROMol.cpp
19: Failed Expression: bond_pin->getBeginAtomIdx()!=bond_pin->getEndAtomIdx()
19: ****
19: 
19: [11:34:00] 	done
19: [11:34:00] -------------------------------------
19: [11:34:00] Testing Issue 2381580
19: [11:34:00] Explicit valence for atom # 0 B, 4, is greater than permitted
19: [11:34:00] Explicit valence for atom # 0 B, 5, is greater than permitted
19: [11:34:00] 	done
19: [11:34:00] -------------------------------------
19: [11:34:00] Testing Issue 2840217
19: [11:34:01] 	done
19: [11:34:01] -----------------------
19: [11:34:01] Testing properties from periodic table
19: [11:34:01] 
19: 
19: ****
19: Post-condition Violation
19: Element 'Xx' not found
19: Violation occurred on line 91 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PeriodicTable.h
19: Failed Expression: anum>-1
19: ****
19: 
19: [11:34:01] Finished
19: [11:34:01] -----------------------
19: [11:34:01] Testing issue 264: adding atoms to molecules that already have conformers
19: [11:34:01] Finished
19: [11:34:01] -----------------------
19: [11:34:01] Testing issue 267: default valence of *
19: [11:34:01] Finished
19: [11:34:01] -----------------------
19: [11:34:01] Testing issue 284: removeBond not updating indices
19: [11:34:01] Finished
19: [11:34:01] -----------------------
19:  Testing RWMol.clear()
19: [11:34:01] Finished
19: [11:34:01] -----------------------
19: [11:34:01] Testing residue information handling on atoms
19: [11:34:01] Finished
19: [11:34:01] -----------------------
19: [11:34:01] Testing function needsUpdatePropertyCache
19: [11:34:01] Finished
19: [11:34:01] -----------------------
19: [11:34:01] Test AtomListLine RoundTrip
19/91 Test #19: graphmolTest1 ....................   Passed    0.21 sec
test 20
      Start 20: graphmolcpTest
20: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmolcpTest
20: Test timeout computed to be: 9.99988e+06
20: [11:34:01] -----------------------
20:  Testing behavior of copied queries
20: 
20: 
20: 
20: COPY
20: [11:34:01] Finished
20: [11:34:01] -----------------------
20:  Testing copying conformers
20: [11:34:01] Finished
20/91 Test #20: graphmolcpTest ...................   Passed    0.03 sec
test 21
      Start 21: graphmolqueryTest
21: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmolqueryTest
21: Test timeout computed to be: 9.99988e+06
21: [11:34:01] ---------------------- Test1
21: [11:34:01] Done!
21: [11:34:01] ---------------------- Test2
21: [11:34:01] -------------------------------------
21: [11:34:01] Testing query--query matches
21: [11:34:01] Done!
21: [11:34:01] ---------------------- Test3
21: [11:34:01] Done!
21: [11:34:01] ---------------------- Test4
21: [11:34:01] Done!
21: [11:34:01] ---------------------- Test5
21: [11:34:01] Done!
21: [11:34:01] Done!
21: [11:34:01] ---------------------- Test issue 2892580
21: [11:34:01] Done!
21: [11:34:01] ---------------------- Test github issue 53: query molecules not matching [R]
21: [11:34:01] Done!
21: [11:34:01] ---------------------- Test queries using qualifiers instead of ==
21: [11:34:01] Done!
21: [11:34:01] ---------------------- Test Github issue 165: radicals not used in atom-atom matching
21: [11:34:01] Done!
21/91 Test #21: graphmolqueryTest ................   Passed    0.02 sec
test 22
      Start 22: graphmolMolOpsTest
22: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmolMolOpsTest
22: Test timeout computed to be: 9.99988e+06
22: [11:34:01] C1CC1
22: [11:34:01] C1CCC1
22: [11:34:01] C1CCCCCC1
22: [11:34:01] C1C(CCC)CC(C(C)CCC(CC))CCC1
22: [11:34:01] CC1CCC1
22: [11:34:01] CC1C(C2)CCC2C1
22: [11:34:01] BFSR: 5
22: [11:34:01] BFSR: 6
22: [11:34:01] ( [11:34:01]  0[11:34:01]  5[11:34:01]  2[11:34:01]  1[11:34:01] )
22: [11:34:01] ( [11:34:01]  0[11:34:01]  7[11:34:01]  4[11:34:01]  1[11:34:01] )
22: [11:34:01] ( [11:34:01]  0[11:34:01]  7[11:34:01]  6[11:34:01]  5[11:34:01] )
22: [11:34:01] ( [11:34:01]  1[11:34:01]  4[11:34:01]  3[11:34:01]  2[11:34:01] )
22: [11:34:01] ( [11:34:01]  5[11:34:01]  2[11:34:01]  3[11:34:01]  6[11:34:01] )
22: [11:34:01] ( [11:34:01]  7[11:34:01]  6[11:34:01]  3[11:34:01]  4[11:34:01] )
22: [11:34:01] C(C1C2C3C41)(C2C35)C45
22: [11:34:01] C1CC2C1CCC2
22: [11:34:01] 
22: C12=C3C=CC=C1C=CC2=CC=C3
22: [11:34:01] C12=C3C=CC=C1C=CC2=CC=C3
22: [11:34:01] C1(O)C(O)C(O)C1O
22: [11:34:01] Count: 5
22: [11:34:01] -----------------------
22:  Testing Hydrogen Ops
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Distance Matrix Operations
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Atom Ranking
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing double bond stereochemistry
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Issue 183
22: 
22: Atoms:
22: 	0 17 Cl chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
22: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
22: 	2 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
22: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
22: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
22: 	5 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
22: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
22: 	7 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
22: 	8 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
22: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
22: 	10 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
22: 	11 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 0 chi: 0
22: 	12 9 F chg: 0  deg: 1 exp: 1 imp: 0 hyb: 4 arom?: 0 chi: 0
22: 	13 6 C chg: 0  deg: 1 exp: 1 imp: 3 hyb: 4 arom?: 0 chi: 0
22: Bonds:
22: 	0 0->1 order: 1 dir: 3 conj?: 0 aromatic?: 0
22: 	1 1->2 order: 1 conj?: 0 aromatic?: 0
22: 	2 1->3 order: 2 stereo: 3 conj?: 1 aromatic?: 0
22: 	3 3->4 order: 1 dir: 3 conj?: 1 aromatic?: 0
22: 	4 4->5 order: 1 conj?: 0 aromatic?: 0
22: 	5 4->6 order: 2 stereo: 3 conj?: 1 aromatic?: 0
22: 	6 6->7 order: 1 dir: 4 conj?: 0 aromatic?: 0
22: 	7 6->8 order: 1 conj?: 0 aromatic?: 0
22: 	8 3->9 order: 1 dir: 4 conj?: 1 aromatic?: 0
22: 	9 9->10 order: 1 conj?: 0 aromatic?: 0
22: 	10 9->11 order: 2 stereo: 2 conj?: 1 aromatic?: 0
22: 	11 11->12 order: 1 dir: 3 conj?: 0 aromatic?: 0
22: 	12 11->13 order: 1 conj?: 0 aromatic?: 0
22: [11:34:01] ref: C/C(F)=C(C)/C(=C(/C)Cl)C(/F)=C(/C)F
22: [11:34:01] smi: C/C(F)=C(C)/C(=C(/C)Cl)C(/F)=C(/C)F
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Issue 188: bad CIP rankings
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Issue 189: BondDirs not getting properly cleared.
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing shortest path code. This should finish very quickly.
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Issue 190: BondDirs incorrectly cleared.
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Issue 211
22: path: 2
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Issue 210
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Issue 212
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing AddHs with coordinates
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing Add Confomers
22: [11:34:01] Finished 
22:  [11:34:01] -----------------------
22:  Sanitization special cases
22: [11:34:01] Warning: conflicting stereochemistry at atom 10 ignored.
22: [11:34:01] Warning: conflicting stereochemistry at atom 10 ignored.
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Issue 276
22: [11:34:01] Finished 
22:  [11:34:01] -----------------------
22:  Additional Aromaticity Cases
22: [11:34:01] Finished 
22:  [11:34:01] -----------------------
22:  Testing sf.net issue 1694023 (bad chiral smiles after removing Hs) 
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing sf.net issue 1719053 (Ring stereochemistry incorrectly removed) 
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing sf.net issue 1811276 (kekulization failing) 
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing sf.net issue 1836576 (sanitization crash) 
22: [11:34:01] Explicit valence for atom # 0 B, 5, is greater than permitted
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing impact of removeHs on chirality
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing SFIssue1894348 (impact of removeHs on bond stereo atoms
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing sf.net issue 1942657 
22: [11:34:01] Explicit valence for atom # 1 C, 5, is greater than permitted
22: [11:34:01] Explicit valence for atom # 1 C, 5, is greater than permitted
22: [11:34:01] Explicit valence for atom # 1 C, 5, is greater than permitted
22: [11:34:01] Explicit valence for atom # 1 Si, 7, is greater than permitted
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing sf.net issue 198608 
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing hybridization assignment 
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing some aromaticity edge cases 
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing sf.net issue 2196817: handling of aromatic dummies
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing sf.net issue 2208994 : kekulization error
22: [11:34:01] Finished
22: [11:34:01] -----------------------
22:  Testing sf.net issue 2313979: aromaticity assignment hangs 
22: [11:34:01]    Doing molecule: bucky1
22: [11:34:01]      This should finish in a few seconds.  >>>
22: [11:34:01]    <<< Done.
22: [11:34:01]    Doing molecule: bucky2
22: [11:34:01]      This should finish in a few seconds.  >>>
22: [11:34:02]    <<< Done.
22: [11:34:02]    Doing molecule: bucky3
22: [11:34:02]      This should finish in a few seconds.  >>>
22: [11:34:03]    <<< Done.
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 2316677 : canonicalization error
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 2951221 : hydrogens added with bad coordinates
22: smi: Cc1ccc(S(=O)(=O)/N=C2\CC(=N\C(C)(C)C)/C2=N\C(C)(C)C)cc1
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 2952255 : bad assignment of radicals to early elements
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 3185548 : problems with SSSR code
22: [11:34:03]   Starting file read 1
22: [11:34:03]   finished
22: [11:34:03]   Starting file read 2
22: [11:34:03]   finished
22: [11:34:03] Finished
22: [11:34:03] -------------------------------------
22: [11:34:03] Testing Issue 3349243
22: [11:34:03] 	done
22: [11:34:03] -------------------------------------
22: [11:34:03] Testing fast find rings
22: [11:34:03] 	done
22: [11:34:03] -----------------------
22:  Testing sf.net issue 2830244: make sure that non-ring aromatic atoms generate errors:
22: [11:34:03] non-ring atom 0 marked aromatic
22: [11:34:03] non-ring atom 0 marked aromatic
22: [11:34:03] Finished
22: [11:34:03] -------------------------------------
22: [11:34:03] Testing Issue 3349243
22: [11:34:03] 	done
22: [11:34:03] -------------------------------------
22: [11:34:03] Testing canonicalization basics
22: [11:34:03] 	done
22: [11:34:03] -----------------------
22:  Testing sf.net issue 3549146: problems after mergeQueryHs
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 249: finding rings consumes all memory
22: starting ring finding
22: done
22: starting ring finding
22: done
22: starting ring finding
22: done
22: starting sanitization
22: done
22: starting sanitization
22: done
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 256: bad atom counts
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 266: ring finding error
22: starting ring finding
22: done
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 266: ring finding error
22: starting ring finding
22: done
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing sf.net issue 272: removing two-coordinate Hs
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing Github issue 8 (impact of removeAtom on bond stereo atoms)
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing Github issue 42 (impact of removeAtom on atom stereochem)
22: smiles: CC[C@]1(C(=O)c([nH])n)CC[C@](C)(O)CC1
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing Github issue 65 (kekulization of boron-containing aromatic rings)
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing Github issue 72 (problems with bad benzothiazolium structure)
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing renumbering atoms
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing github issue 141: Kekulization of molecule with aromatic N leaves the explicit H there.
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22: [11:34:03] Testing ZBO basics
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing operator= on molecules
22: [11:34:03] Finished
22: [11:34:03] -------------------------------------
22: [11:34:03] Testing Atom-Atom matching behavior
22: [11:34:03] 	done
22: [11:34:03] -----------------------
22:  Testing github issue 190: Don't merge Hs onto dummy atoms.
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing getMolFragsWithQuery().
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing CIP chirality
22: -------------------------------
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing github issue 418: removeHs not updating H count.
22: [11:34:03] Explicit valence for atom # 0 N, 4, is greater than permitted
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing github issue 432: problems caused by aromatic Ns with radical electrons.
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing github issue 443: kekulization problems caused by any bonds.
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing github issue 447: Radicals are not correctly assigned when reading from SMILES.
22: [11:34:03] Finished
22: [11:34:03] -----------------------
22:  Testing generation of new molecules from molecule fragments
22: [11:34:03] Finished
22/91 Test #22: graphmolMolOpsTest ...............   Passed    2.60 sec
test 23
      Start 23: graphmoltestCanon
23: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmoltestCanon
23: Test timeout computed to be: 9.99988e+06
23: [11:34:03] Pass in the list of smiles
23: [11:34:03] FINISHED after 0 lines.
23/91 Test #23: graphmoltestCanon ................   Passed    0.01 sec
test 24
      Start 24: graphmoltestChirality
24: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmoltestChirality
24: Test timeout computed to be: 9.99988e+06
24: [11:34:03] -------------------------------------
24: [11:34:03] CIP codes from SMILES
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] CIP codes from a mol file (1)
24: [11:34:03]  >>>>>>>>>>>>> smiles 1 <<<<<<<<<<<<<< 
24: [11:34:03]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] CIP codes from a mol file (2)
24: [11:34:03]  >>>>>>>>>>>>> smiles 1 <<<<<<<<<<<<<< 
24: [11:34:03]  >>>>>>>>>>>>> smiles 2 <<<<<<<<<<<<<< 
24: [11:34:03]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] CIP codes from a mol->smiles conversion (1)
24: [11:34:03] smiout: N[C@H](O)I
24: [11:34:03]  >>>>>>>>>>>>> mol file <<<<<<<<<<<<<< 
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] chirality cleanup
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] chirality perception from 3D coordinates: 
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] iterative chirality (sf.net issue 1931470): 
24: [11:34:03]  : C[C@H]1CCC[C@@H](C)[C@H]1C C[C@H]1CCC[C@@H](C)[C@H]1C
24: [11:34:03]  : C[C@H]1CCC[C@@H](C)[C@@H]1C C[C@H]1CCC[C@@H](C)[C@@H]1C
24: [11:34:03]  : CC1[C@H](C)CCC[C@H]1C CC1[C@H](C)CCC[C@H]1C
24: [11:34:03]  : CC1[C@H](C)CCC[C@H]1C CC1[C@H](C)CCC[C@H]1C
24: [11:34:03]  : C/C=C\[C@@H](C)/C=C/C C/C=C\[C@@H](C)/C=C/C
24: [11:34:03]  : C/C=C\[C@H](C)/C=C/C C/C=C\[C@H](C)/C=C/C
24: [11:34:03]  : C/C=C/C(C)/C=C/C C/C=C/C(C)/C=C/C
24: [11:34:03]  : CC=C[C@@H](C)/C=C/C CC=C[C@@H](C)/C=C/C
24: [11:34:03]  : CC=C[C@H](C)/C=C\C CC=C[C@H](C)/C=C\C
24: [11:34:03]  : C/C=C(/[C@@](C)(F)Cl)[C@](C)(F)Cl C/C=C(/[C@@](C)(F)Cl)[C@](C)(F)Cl
24: [11:34:03]  : C/C=C(\[C@@](C)(F)Cl)[C@](C)(F)Cl C/C=C(\[C@@](C)(F)Cl)[C@](C)(F)Cl
24: [11:34:03]  : CC=C([C@](C)(F)Cl)[C@](C)(F)Cl CC=C([C@](C)(F)Cl)[C@](C)(F)Cl
24: [11:34:03]  : C/C=C\C(\C=C\C)=C\C C/C=C\C(\C=C\C)=C\C
24: [11:34:03]  : C/C=C\C(=C/C)\C=C\C C/C=C\C(=C/C)\C=C\C
24: [11:34:03]  : CC=C(/C=C/C)/C=C/C CC=C(/C=C/C)/C=C/C
24: [11:34:03]  : CC=C(/C=C\C)/C=C\C CC=C(/C=C\C)/C=C\C
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] testing that the removal of bond directions is correct: 
24: [11:34:03]  : BC(=C/Cl)/C=C/C BC(=C/Cl)/C=C/C
24: [11:34:03]  : BC(=C/Cl)/C=C/C BC(=C/Cl)/C=C/C
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] Issue 2762917: chirality swap on addHs()
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] Issue 3009911: bad atom priorities
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] Issue 3139534: stereochemistry in larger rings
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] Test findChiralAtoms.
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] Issue 3453172: stereochemistry at three-coordinate S and Se
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] test ring stereochemistry 
24: [11:34:03]  : B[C@H]1CC[C@H](C)CC1 B[C@H]1CC[C@H](C)CC1
24: [11:34:03]  : B[C@H]1CC[C@H](C)CC1 B[C@H]1CC[C@H](C)CC1
24: [11:34:03]  : C[C@H]1CC[C@H](F)CC1 C[C@H]1CC[C@H](F)CC1
24: [11:34:03]  : CC1(C)CCC(F)CC1 CC1(C)CCC(F)CC1
24: [11:34:03]  : C1CC2CCC1CC2 C1CC2CCC1CC2
24: [11:34:03]  : CC12CCC(C)(CC1)CC2 CC12CCC(C)(CC1)CC2
24: [11:34:03]  : CC12CCC(C)(NC1)OC2 C[C@]12CC[C@](C)(CN1)CO2
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] Testing github issue 87: removal of bond wedging
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] Testing github issue 90: isotopes and chirality
24: [11:34:03] done
24: [11:34:03] -------------------------------------
24: [11:34:03] Issue 2705543: 
24: [11:34:03] done
24/91 Test #24: graphmoltestChirality ............   Passed    0.05 sec
test 25
      Start 25: graphmoltestPickler
25: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmoltestPickler
25: Test timeout computed to be: 9.99988e+06
25: [11:34:03] -------------------------------------
25: [11:34:03] Testing String Pickle Roundtrips.
25: [11:34:03] 	done
25: [11:34:03] -------------------------------------
25: [11:34:03] Testing reading existing pickle file (v2).
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing combining molecules using pickles.
25: Atoms:
25: 	0 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
25: 	1 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
25: 	2 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
25: 	3 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
25: 	4 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
25: 	5 8 O chg: 0  deg: 2 exp: 2 imp: 0 hyb: 4 arom?: 0 chi: 0
25: 	6 6 C chg: 0  deg: 2 exp: 2 imp: 2 hyb: 4 arom?: 0 chi: 0
25: Bonds:
25: 	0 0->1 order: 1 conj?: 0 aromatic?: 0
25: 	1 1->2 order: 1 conj?: 0 aromatic?: 0
25: 	2 2->0 order: 1 conj?: 0 aromatic?: 0
25: 	3 3->4 order: 1 conj?: 0 aromatic?: 0
25: 	4 4->5 order: 1 conj?: 0 aromatic?: 0
25: 	5 5->6 order: 1 conj?: 0 aromatic?: 0
25: 	6 6->3 order: 1 conj?: 0 aromatic?: 0
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing Issue164: Roundtrip Pickle Failure.
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing Issue219: Pickle Failure with Conformations.
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing Issue220: Pickle problems with bond stereochemistry.
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing query serialization.
25: [11:34:04] C=[$(C=O)]
25: [11:34:04] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl] S(=O)(=O)-[C&H2]-,:[F,Br,I,Cl]
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing radical handling in pickles.
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing sf.net issue 2788233.
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing sf.net issue 3202580.
25:   mass! 13.0034
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing sf.net issue 3316407.
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing sf.net issue 3496759.
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing sf.net issue 280.
25: [11:34:04] 	done
25: [11:34:04] -------------------------------------
25: [11:34:04] Testing sf.net issue 285.
25: [11:34:04] 	done
25: [11:34:04] -----------------------
25: [11:34:04] Testing residue information handling on atoms
25: [11:34:04] 	done
25: [11:34:04] -----------------------
25: [11:34:04] Testing Github issue 149: cannot pickle unsanitized molecules
25: [11:34:04] 	done
25/91 Test #25: graphmoltestPickler ..............   Passed    0.34 sec
test 26
      Start 26: graphmolIterTest
26: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmolIterTest
26: Test timeout computed to be: 9.99988e+06
26: [11:34:04] test1 done
26: [11:34:04] test2 done
26: [11:34:04] test3 done
26: [11:34:04] test4 done
26: [11:34:04] test5 done
26: [11:34:04] test6 done
26: [11:34:04] test7 done
26: [11:34:04] test8 done
26: [11:34:04] testIssue263 done
26/91 Test #26: graphmolIterTest .................   Passed    0.02 sec
test 27
      Start 27: hanoiTest
27: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/hanoiTest
27: Test timeout computed to be: 9.99988e+06
27: [11:34:04] Testing the hanoi sort
27: [11:34:04] populating vectors
27: [11:34:04] sorting (hanoi sort) vectors
27: [11:34:06] done: 500000
27: [11:34:06] Done
27: [11:34:06] Testing hanoi with a functor.
27: [11:34:06] Done
27: [11:34:06] Testing basic partition refinement.
27: [11:34:06] Done
27: [11:34:06] Testing partition refinement with neighbors.
27: [11:34:06] Done
27: [11:34:06] testing canonicalization via tie breaking.
27: [11:34:06] Done
27: [11:34:06] testing canonicalization using the wrapper.
27: [11:34:06] Done
27: [11:34:06] testing some specific ordering problems
27: [11:34:06] Finished
27: [11:34:06] testing chiral invariants.
27: [11:34:06] Finished
27: [11:34:06] testing unique ranks in w.r.t. renumbering.
27: [11:34:06] Finished
27: [11:34:06] testing mol fragments.
27: [11:34:06] Finished
27: [11:34:06] testing smiles round-tripping.
27: [11:34:06] Finished
27: [11:34:06] testing stability w.r.t. renumbering.
27: [11:34:29] Finished
27: [11:34:29] testing protein round-tripping.
27: [11:34:30] Finished
27/91 Test #27: hanoiTest ........................   Passed   26.11 sec
test 28
      Start 28: graphmolMemTest1
28: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/graphmolMemTest1
28: Test timeout computed to be: 9.99988e+06
28: [11:34:30] -----------------------
28:  dict
28: [11:34:30] Finished
28/91 Test #28: graphmolMemTest1 .................   Passed    0.01 sec
test 29
      Start 29: testDepictor
29: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/testDepictor
29: Test timeout computed to be: 9.99988e+06
29: [11:34:30] ***********************************************************
29: [11:34:30]    test1 
29: [11:34:30] ***********************************************************
29: 
29: [11:34:30] ***********************************************************
29: [11:34:30]    testCollisions 
29: [11:34:30] ***********************************************************
29: 
29: [11:34:30] ***********************************************************
29: [11:34:30]    testAddHs 
29: [11:34:30] ***********************************************************
29: 
29: [11:34:30] ***********************************************************
29: [11:34:30]    test198 
29: [11:34:30] ***********************************************************
29: 
29: [11:34:30] ***********************************************************
29: [11:34:30]    test2 
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    test3 
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    test4 
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    tempTest 
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Issue248 
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Queries 
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test crashes associated with RemoveHs 
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Issue 2091304
29: [11:34:30] ***********************************************************
29: [11:34:30] Warning: stereochemistry around double bond may be incorrect in depiction.
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Issue 2303566
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Issue 2821647
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Issue 2948402
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Issue 2995724
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Testing a change of the depictor bond length
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Issue 3122141
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Issue 3135833
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test Issue 3487469
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test GitHub Issue 8
29: [11:34:30] ***********************************************************
29: [11:34:30] ***********************************************************
29: [11:34:30]    Test GitHub Issue 78
29: [11:34:30] ***********************************************************
29/91 Test #29: testDepictor .....................   Passed    0.28 sec
test 30
      Start 30: pyDepictor
30: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Depictor/Wrap/testDepictor.py"
30: Test timeout computed to be: 9.99988e+06
30: ......
30: ----------------------------------------------------------------------
30: Ran 6 tests in 0.367s
30: 
30: OK
30/91 Test #30: pyDepictor .......................   Passed    0.58 sec
test 31
      Start 31: smiTest1
31: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/smiTest1
31: Test timeout computed to be: 9.99988e+06
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing molecules which should parse.
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing molecules which should fail to parse/sanitize.
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing details
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing smiles that were previously problems
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing basic SMILES canonicalization
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 127 (chiral smiles with fused rings)
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 143 (removing chiral tags for non-chiral centers)
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 151 (Chiral centers in rings with hydrogen on them not handled correctly)
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 153 (Incorrect order of ring-closure bonds from SMILES)
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 175 (cis/trans wrong on ring closures)
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 176 (problems with 'mol BOND ring_number')
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 180: Z/E problems
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 159 (cis/trans wrong in some branched systems)
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 184: Cis/Trans incorrect on ring-closure bonds
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 185: Cis/Trans incorrect on writing branches
31: [11:34:31] C(\C)=N\O
31: [11:34:31] CC(/C=P/N)=N\O
31: [11:34:31] N/P=C/C(C)=N/O
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 191: Bad bond directions in a branch
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 256: SMILES yields incorrect structure
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 266: kekulized SMILES output
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing rootedAtAtom functionality
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing isotope handling
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing SF.net bug 1670149
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing SF.net bug 1842174: bad bond dirs in branches
31: [11:34:31] F/C=N/Cl
31: [11:34:31] C(\F)=N/Cl
31: [11:34:31] F/C=C/C=C(/Cl)Br
31: [11:34:31] C(/C=C/F)=C(\Cl)Br
31: [11:34:31] O=NC1=NOC(=N\O)/C1=N\O
31: [11:34:31] O/N=C1\COC\C1=N\O
31: [11:34:31] O/N=C1\COC\[N+]1=N\O
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing SF.net bug 1844959: bad handling of Hs in chiral smiles
31: [11:34:31] --------------------------------------------
31: [11:34:31] C[C@H]1CNOC1
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Issue 157 (Symmetric molecules with multiple chiral centers badly canonicalized)
31: [11:34:31] -**-**---------------------------------------
31: [11:34:31] C1N[C@@H]2CC1CO2
31: [11:34:31] C1N[C@@H]2CC1CO2
31: [11:34:31] C1N[C@@H]2CC1CO2
31: [11:34:31] O=C1NC(=O)C2C1[C@H]1C=C[14C@@H]2C1
31: [11:34:31] O=C1NC(=O)C2C1[C@H]1C=C[14C@@H]2C1
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing handling of stereochemical smiles
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing sf.net bug 1942220
31: [11:34:31] 	done
31: [11:34:31] -----------------------
31:  Testing sf.net issue 3127883 (kekulization failing) 
31: [11:34:31] Finished
31: [11:34:31] -------------------------------------
31: [11:34:31] test adding atom-map information
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Issue 3145697 repeated ring labels in disconnected structures
31: [11:34:31] SMILES Parse Error: unclosed ring for input: C1.C11.C
31: [11:34:31] SMILES Parse Error: unclosed ring for input: C1C.CC11CCC
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Issue 3152751 cannot roundtrip charged aromatic Se and Te
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing use of replacement patterns in input
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing forcing explicit bonds in the output SMILES
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Issue 3139534: stereochemistry in larger rings
31: [11:34:31] smiles: C1=C\COCCCCC/1
31: [11:34:31] smiles: C1=C/CCCCCC/C=C/1
31: [11:34:31] smiles: C1=C\CCCCCC/C=C/1
31: [11:34:31] smiles: C1=C/CCCOC/C=C/1
31: [11:34:31] smiles: C1=C/NCCCCC/1
31: [11:34:31] smiles: C1CCCCN/C=C/1
31: [11:34:31] smiles: CCC/[N+]1=C/c2ccccc2OC(=O)\C=C/1O
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Issue 3526815: canonical smiles failure in many symmetric fragments
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Issue 3525799: bad smiles for r groups
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Issue 3526810: canonical smiles failure in symmetric heterocycles
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Issue 3528556: canonical smiles failure in cycle
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] do not repeat ring closure digits on the same atom
31: --C1CCC2(CC1)CCCCC2CCC1CCCC1
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Issue 257: unrecognized bonds are in SMILES as ?s
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing handling of ring stereochemistry
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Github 45: stereochemistry information influencing non-stereo SMILES
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Github 206: Problems round-tripping P
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Github 378: SMILES parser doing the wrong thing for odd dot-disconnected construct
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Github 389: Add option to SmilesWriter to allow writing of all explicit hydrogens
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing SF.net bug 1719046: explicit Hs in canonical smiles
31: smi: ClC1CCCCC1
31: smi: ClC1CCCCC1
31: smi: ClC1CCCCC1Br
31: smi: c1ccccc1
31: smi: c1ccncc1
31: smi: c1cc[nH]c1
31: smi: c1cc[nH]c1
31: smi: c1cc[pH]c1
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing SF.net bug 1844617: oscillating chirality in canonical smiles
31: [11:34:31] CN1CC[C@@]23[C@@H]4CC[C@@H]1[C@]2(O)CCC(=O)[C@@H]3OC4
31: [11:34:31] CN1CC[C@@]23[C@@H]4CC[C@@H]1[C@]2(O)CCC(=O)[C@@H]3OC4
31: [11:34:31] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3C
31: [11:34:31] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3C
31: [11:34:31] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3CC1CC1
31: [11:34:31] O=C1CC[C@@]2(O)[C@H]3CC[C@@H]4CO[C@@H]1[C@]42CCN3CC1CC1
31: [11:34:31] 	done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Fragment Smiles
31: CbC(aC)aC
31: CaC(aC)bC
31: CbC(aC)bC
31: O.C
31: [11:34:31] done
31: [11:34:31] -------------------------------------
31: [11:34:31] Testing Github 12: non-canonical fragment smiles
31: [11:34:31] done
31: [11:34:31] testing smiles writing/canonicalization for modified molecules.
31/91 Test #31: smiTest1 .........................   Passed    0.26 sec
test 32
      Start 32: smaTest1
32: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SmilesParse/smaTest1
32: Test timeout computed to be: 9.99988e+06
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing patterns which should parse.
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing patterns which should fail to parse.
32: [11:34:31] 	Expect Parse error messages
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing matching
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing matching2
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing matching3
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing matching4
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing matching 5
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing matching 6
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing Smarts Writer.
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing fragment patterns.
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing former problems
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing Issue 196: Smarts handling of 'aa' incorrect
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing Issue 254: Bad handling of unspecified bonds in SMARTS
32: [11:34:31] 	done
32: [11:34:31] -------------------------------------
32: [11:34:31] Testing Issue 255: Core leaks in smarts parsing.  Watch memory consumption.
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing Issue 330: problems writing some recursive smarts.
32: [11:34:32] sma: [$(C=O)]
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing Issue 351:
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing atom map assignment:
32: [11:34:32] SMARTS Parse Error: syntax error for input: [C:10H3]CC
32: [11:34:32] SMARTS Parse Error: syntax error for input: [C:10:3]ON
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing cleaner SMARTS -> SMILES 
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing SMILES -> SMARTS
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing Issue 1914154: problems with generating smarts for recursive queries
32: [11:34:32] [$(C)&$(O)]
32: [11:34:32] [$(C),$(O)]
32: [11:34:32] [!$(C)&$(O)]
32: [11:34:32] [C&$(C-O)&$(C=O)]
32: [11:34:32] [$(C=O),$(C-O);$(C-N)]
32: [11:34:32] [$(C-N);$(C=O),$(C-O)]
32: [11:34:32] [$(C-N)&$(C=O),$(C-O)]
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing miscellaneous bits of SMARTS writing
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing issue 1804420, missing assignment of atoms maps
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing handling (or lack thereof) of stereochem in smarts (sf.net issue 2738320)
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing Issue 2884178 part1: SubstructMatch not returning correct number of matches
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing Issue 2884178 part2: SubstructMatch not returning correct number of matches
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing Issue 3000399: incorrect behavior of X queries
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing serial numbers in recursive SMARTS queries
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing use of replacement patterns in input
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing github #313: problems with 'h' in SMARTS
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing github #314: problems with 'x' in SMARTS
32: [11:34:32] 	done
32: [11:34:32] -------------------------------------
32: [11:34:32] Testing Github 378: SMILES parser doing the wrong thing for odd dot-disconnected construct
32: [11:34:32] done
32/91 Test #32: smaTest1 .........................   Passed    1.05 sec
test 33
      Start 33: fileParsersTest1
33: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/fileParsersTest1
33: Test timeout computed to be: 9.99988e+06
33: [11:34:32] testing atom query parsing
33: [11:34:32] done
33: [11:34:32] testing bond query parsing
33: [11:34:32] done
33: [11:34:32]  ----------> Test4 
33: [11:34:32]  Finished <---------- 
33: [11:34:32]  ----------> Test5 
33: [11:34:32] testing chirality parsing
33: [11:34:32] done
33: [11:34:32] testing Issue145:
33:  Mol parsing: molecule yields non-canonical smiles from mol block
33: [11:34:32] done
33: [11:34:32] testing Issue148:
33:  Mol files containing mis-drawn nitro groups not properly parsed
33: [11:34:32] done
33: [11:34:32] testing roundtrip chirality parsing
33: [11:34:32] SMI: O[C@H](S)I
33: [11:34:32] Issue142d.mol
33:      RDKit          3D
33: 
33:   4  3  0  0  0  0  0  0  0  0999 V2000
33:    -0.6675   -0.6843    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
33:    -0.0196   -0.1648    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
33:     0.6675   -0.6517    0.0000 S   0  0  0  0  0  0  0  0  0  0  0  0
33:    -0.0948    0.6843    0.0000 I   0  0  0  0  0  0  0  0  0  0  0  0
33:   2  1  1  1
33:   3  2  1  0
33:   2  4  1  0
33: M  END
33: 
33: [11:34:32] 9 9
33: [11:34:32] done
33: [11:34:32] testing reading without sanitization
33: [11:34:32] done
33: [11:34:32] testing Issue180: bad Z/E assignments
33: [11:34:32] done
33: [11:34:32] testing Issue264: bad stereochemistry from mol files
33: [11:34:32] O=C1Nc2ccc(Br)cc2/C1=N/c1ccccc1
33: [11:34:32] O=C1Nc2ccc(Br)cc2/C1=N\c1ccccc1
33: [11:34:32] done
33: [11:34:32] testing Issue399: bond wedging cleanup
33: [11:34:32] done
33: [11:34:32] testing handling of charge lines
33: [11:34:32] done
33: [11:34:32] testing basic double bond stereochemistry
33: [11:34:32]   sub-test for issue 3099836
33: [11:34:32] done
33: [11:34:32] testing double bonds with symmetric substituents
33: [11:34:32] done
33: [11:34:32] testing double bonds in rings with stereochem specifications
33: [11:34:32] done
33: [11:34:32] testing mol file R-group parsing
33: [11:34:32] done
33: [11:34:32] testing mol file degree queries
33: [11:34:32] done
33: [11:34:32] testing mol file ring-bond count queries
33: [11:34:32] done
33: [11:34:32] testing mol file unsaturation queries
33: [11:34:32] done
33: [11:34:32] testing mol file queries -> SMARTS 
33: [11:34:32] done
33: [11:34:32] testing handling of missing files
33: [11:34:32] done
33: [11:34:32] testing issue Issue1965035: problems with WedgeMolBonds 
33: [11:34:32] done
33: [11:34:32] testing handling of radicals 
33: [11:34:32] done
33: [11:34:32] testing handling of bogus bond orders (issue 2337369)
33: [11:34:32] bond with order 0 found on line 7. This is not part of the MDL specification.
33: [11:34:32] unrecognized query bond type, 9, found on line 7. Using an "any" query.
33: [11:34:32] done
33: [11:34:32] testing handling of atom stereo parity flags
33: [11:34:32] done
33: [11:34:32]  Testing issue 2692246 
33: [11:34:32]  done
33: [11:34:32]  Testing mol blocks without kekulization 
33: [11:34:32]  done
33: [11:34:32] testing atom values in mol files
33: [11:34:32] done
33: [11:34:32] testing handling of A, Q, and * in mol files
33: [11:34:32] done
33: [11:34:32] testing handling of mol files with atom lists and values
33: [11:34:32] done
33: [11:34:32] testing basic handling of v3000 mol files
33: [11:34:32] skipping block at line 25: BEGIN COLLECTION
33: [11:34:32] done
33: [11:34:32]  Testing issue 2963522 
33: [11:34:32]  done
33: [11:34:32]  Testing issue 3073163 
33: [11:34:32]  done
33: [11:34:32]  Testing Issue3154208 (a large mol failure)
33: generating smiles
33: smiles: c12n(C3OC(COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)C(OP(S)(=O)OCC(COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(cc5)c(=O)[nH]c(N)n6)OC4COP(OC4C(O)C(n5c(=O)[nH]c(=O)cc5)OC4COP(OC4C(O)C(n5c(=O)nc(N)cc5)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4COP(OC4C(O)C(n5c6c(nc5)c(N)ncn6)OC4CO)(=O)S)(=O)S)(=O)S)(S)=O)(S)=O)(=O)S)(=O)S)(S)=O)(=O)S)(S)=O)(S)=O)O)C3O)ccc1c(=O)[nH]c(N)n2
33: converting back
33: check isomorphism
33: [11:34:32] Large molecule canonical smiles test
33: [11:34:32] Iteration: 1 of 50
33: [11:34:32] Iteration: 11 of 50
33: [11:34:33] Iteration: 21 of 50
33: [11:34:34] Iteration: 31 of 50
33: [11:34:34] Iteration: 41 of 50
33: [11:34:35]  done
33: [11:34:35] -------------------------------------
33: [11:34:35] Issue 3228150: round-trip stereochemistry failure
33: [11:34:35]  : C/N=C1/CC/C(=N/C)O1
33: [11:34:35]  : C/N=C1/CC/C(=N/C)O1
33: [11:34:35]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
33: [11:34:35]  : C/N=C1\C(=O)/C(=N\C)C2/C(=N/C)C(=O)/C(=N\C)C12
33: [11:34:35] done
33: [11:34:35] testing writing mol file R-groups (issue 3313540)
33: [11:34:35] done
33: [11:34:35]  ----------> Test issue 3359739 
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test issue 3374639 
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test three-coordinate chirality 
33: [11:34:35] Warning: conflicting stereochemistry at atom 1 ignored.
33: [11:34:35] Warning: conflicting stereochemistry at atom 1 ignored.
33: [11:34:35] Warning: conflicting stereochemistry at atom 1 ignored.
33: [11:34:35] Warning: conflicting stereochemistry at atom 1 ignored.
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test issue 3375647 
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test issue 3375684 
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test handling of chiral phosphorous 
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test issue 3392107 
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test issue 3432136 
33: [11:34:35]  Unhandled CTAB feature: S group MON on line: 14. Molecule skipped.
33: [11:34:35]  Unhandled CTAB feature: S group MON on line 22 on line: 22. Molecule skipped.
33: [11:34:35]  S group SUP ignored on line 35.
33: [11:34:35]  S group SUP ignored on line 28
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test issue 3477283 
33: [11:34:35]  deprecated group abbreviation ignored on line 24
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test issue 3484552 
33: [11:34:35]  Finished <---------- 
33: [11:34:35]  ----------> Test issue 3514824 
33: [11:34:35]  Finished <---------- 
33: [11:34:35] -------------------------------------
33: [11:34:35] Issue 3525799: bad smiles for r groups
33: smiles: [1*]c1c([2*])c([3*])c([4*])c(-c2c([9*])oc3c([8*])c([7*])c([6*])c([5*])c3c2=O)c1[10*]
33: [11:34:35] done
33: [11:34:35] -------------------------------------
33: [11:34:35] Testing skip lines in CTABs
33: [11:34:35] done
33: [11:34:35] -------------------------------------
33: [11:34:35] Bad issue 269: handling of bad atom symbols in CTABs
33: [11:34:35] 
33: 
33: ****
33: Post-condition Violation
33: Element 'Lv' not found
33: Violation occurred on line 91 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PeriodicTable.h
33: Failed Expression: anum>-1
33: ****
33: 
33: [11:34:35] done
33: [11:34:35] testing handling of chiral flags
33: [11:34:35] done
33: [11:34:35] testing handling of mol file valence flags
33: [11:34:35] done
33: [11:34:35] testing github issue 88: M  END not being read from V3K ctabs
33: [11:34:35] done
33: [11:34:35] testing github issue 82: stereochemistry only perceived if sanitization is done
33: [11:34:35] done
33: [11:34:35] testing impact of Hs in mol files on stereochemistry
33: [11:34:35] done
33: [11:34:35] testing reading reactions in mol files
33: [11:34:35] done
33: [11:34:35] testing Github 166: skipping sanitization on reading pdb files
33: [11:34:35] done
33: [11:34:35] testing ZBO parsing
33: [11:34:35] done
33: [11:34:35] testing Github 164: problems with Xe from mol files
33: [11:34:35] done
33: [11:34:35] testing reading pdb files
33: [11:34:35] done
33: [11:34:35] testing github issue 194: bad bond types from pdb
33: [11:34:35] done
33: [11:34:35] testing github issue 196: left justitified bond topology
33: [11:34:35] done
33: [11:34:35] -------------------------------------
33: [11:34:35] Bad issue 3557676: handling of D and T in CTABs
33: [11:34:35] done
33: [11:34:35] testing basic writing of v3000 mol files
33: [11:34:36] done
33: [11:34:36] testing more queries from v3000 mol files
33: [11:34:36] done
33: [11:34:36] -----------------------
33:  Testing github issue 191: wavy bonds to Hs should affect attached double bond stereochemistry.
33: [11:34:36] Finished
33: [11:34:36] -------------------------------------
33: [11:34:36] Testing Github 210: flag possible stereocenters when calling assignStereochemistry()
33: [11:34:36] Finished
33: [11:34:36] testing splitting on PDB residues
33: [11:34:37] done
33: [11:34:37] -------------------------------------
33: [11:34:37] Testing Github 337: No double bond stereo perception from CTABs when sanitization is turned off
33: [11:34:37] Finished
33: [11:34:37] -------------------------------------
33: [11:34:37] Testing Github 360: Computed props on non-sanitized molecule interfering with substructure matching
33: [11:34:37] Finished
33/91 Test #33: fileParsersTest1 .................   Passed    4.63 sec
test 34
      Start 34: testMolSupplier
34: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testMolSupplier
34: Test timeout computed to be: 9.99988e+06
34: [11:34:37] 
34: -----------------------------------------
34: [11:34:37] Finished: testMolSup()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testRandMolSup()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testSmilesSup()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] ------------------------------------------------------
34: [11:34:37] SMILES Parse Error: syntax error for input: fail
34: [11:34:37] ERROR: Smiles parse error on line 3
34: [11:34:37] ERROR: Cannot create molecule from : 'fail'
34: [11:34:37] ------------------------------------------------------
34: [11:34:37] ------------------------------------------------------
34: [11:34:37] >>> This may result in an infinite loop.  It should finish almost immediately:
34: [11:34:37] <<< done.
34: [11:34:37] Finished: testSmilesSupFromText()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testSmilesWriter()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] 48
34: [11:34:37] 78
34: [11:34:37] 128
34: [11:34:37] 163
34: [11:34:37] 164
34: [11:34:37] 170
34: [11:34:37] 180
34: [11:34:37] 186
34: [11:34:37] 192
34: [11:34:37] 203
34: [11:34:37] 210
34: [11:34:37] 211
34: [11:34:37] 213
34: [11:34:37] 220
34: [11:34:37] 229
34: [11:34:37] 256
34: [11:34:37] 16
34: [11:34:37] Finished: testSDWriter()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testSDSupplierEnding()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testSuppliersEmptyFile()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testCisTrans()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testStereoRound()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testIssue226()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testTDTSupplier1()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testTDTSupplier2()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testTDTSupplier3()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testSDSupplierFromText()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testIssue265()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] ERROR: End of data field name not found
34: [11:34:37] ERROR: moving to the begining of the next molecule
34: [11:34:37] Explicit valence for atom # 0 F, 2, is greater than permitted
34: [11:34:37] ERROR: Could not sanitize molecule ending on line 16
34: [11:34:37] ERROR: Explicit valence for atom # 0 F, 2, is greater than permitted
34: [11:34:37] ERROR: Atom line too short: '  1  2  1  0  0  0  0' on line 12
34: [11:34:37] ERROR: moving to the begining of the next molecule
34: [11:34:37] ERROR: Bond line too short: 'M  END' on line 18
34: [11:34:37] ERROR: moving to the begining of the next molecule
34: [11:34:37] Finished: testSDErrorHandling()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testIssue381()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testSetStreamIndices()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testMixIterAndRandom()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: build:
34: [11:34:37] Finished: testRemoveHs()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testGetItemText()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testForwardSDSupplier()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testMissingCRSDSupplier()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testIssue3482695()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37]  Unhandled CTAB feature: S group SRU on line: 75. Molecule skipped.
34: [11:34:37]  Unhandled CTAB feature: S group SRU on line: 245. Molecule skipped.
34: [11:34:37]  Unhandled CTAB feature: S group SRU on line: 324. Molecule skipped.
34: [11:34:37]  Unhandled CTAB feature: S group SRU on line: 537. Molecule skipped.
34: [11:34:37] ERROR: Cannot convert     to int on line 558
34: [11:34:37] ERROR: moving to the begining of the next molecule
34: [11:34:37]  Unhandled CTAB feature: S group SRU on line: 884. Molecule skipped.
34: [11:34:37] Finished: testIssue3525673()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testBlankLinesInProps()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testSkipLines()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testGitHub23()
34: [11:34:37] -----------------------------------------
34: 
34: [11:34:37] -----------------------------------------
34: [11:34:37] Finished: testGitHub88()
34: [11:34:37] -----------------------------------------
34: 
34/91 Test #34: testMolSupplier ..................   Passed    0.12 sec
test 35
      Start 35: testMolWriter
35: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testMolWriter
35: Test timeout computed to be: 9.99988e+06
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testSmilesWriter()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testSmilesWriter2()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testSmilesWriterNoNames()
35: [11:34:37] SMILES Parse Error: syntax error for input: CC1=CC(=O)C=CC1=O 34.14
35: [11:34:37] ERROR: Smiles parse error on line 1
35: [11:34:37] ERROR: Cannot create molecule from : 'CC1=CC(=O)C=CC1=O 34.14'
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testSmilesWriterClose()
35: [11:34:37] SMILES Parse Error: syntax error for input: CC1=CC(=O)C=CC1=O 34.14
35: [11:34:37] ERROR: Smiles parse error on line 1
35: [11:34:37] ERROR: Cannot create molecule from : 'CC1=CC(=O)C=CC1=O 34.14'
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testSDWriter()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testTDTWriter()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testSmilesWriterStrm()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testSDWriterStrm()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testTDTWriterStrm()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testSDMemoryCorruption()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testIssue265()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testMolFileChiralFlag()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing handling of mol file valence flags
35: [11:34:37] done
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing handling of mol files with reactions
35: [11:34:37] done
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing handling of ZBO specs
35: MOLBLOCK:
35: 
35:      RDKit          2D
35: 
35:  11 10  0  0  0  0  0  0  0  0999 V2000
35:    -0.3380    0.2050    0.0000 Fe  0  0  0  0  0  0  0  0  0  0  0  0
35:     0.4870    0.2050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
35:    -1.0524   -0.2075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
35:    -1.0524    0.6175    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
35:     1.3120    0.2050    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
35:    -1.7669   -0.6200    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
35:    -1.7669    1.0300    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
35:    -0.3380    1.0300    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
35:    -0.3380   -0.6200    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
35:    -0.3380    1.8550    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
35:    -0.3380   -1.4450    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
35:   1  2  1  0
35:   1  3  1  0
35:   1  4  1  0
35:   2  5  2  0
35:   3  6  2  0
35:   4  7  2  0
35:   1  8  1  0
35:   1  9  1  0
35:   8 10  2  0
35:   9 11  2  0
35: M  ZBO  5   1   0   2   0   3   0   7   0   8   0
35: M  HYD  6   1   0   2   2   3   2   4   2   8   2   9   2
35: M  END
35: ------
35: [11:34:37] done
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] testing SDWriter options
35: [11:34:37] done
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing details of v3000 writing
35: [11:34:37] done
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing github issue 187: A not written to mol block
35: [11:34:37] done
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing github issue 186: chiral S not written to ctab
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing github issue 189: Problems round-tripping Al2Cl6 via CTAB
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing github issue 266: Bond query information written to CTAB
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing github issue 268: Bond topology information written to CTAB
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing github issue 357: Hydrogens in mol blocks have a valence value set
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing test needsUpdatePropertyCache functionality in SDwriter
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] Running testIssue3525000()
35: [11:34:37] Finished
35: [11:34:37] -----------------------------------------
35: 
35: [11:34:37] -----------------------------------------
35: [11:34:37] testing github issue 488: SmilesWriter not creating automatic name values for molecules read from CTABs
35: [11:34:37] -----------------------------------------
35: 
35/91 Test #35: testMolWriter ....................   Passed    0.22 sec
test 36
      Start 36: testTplParser
36: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testTplParser
36: Test timeout computed to be: 9.99988e+06
36: [11:34:37] testing basic tpl parsing
36: [11:34:37] done
36: [11:34:37] testing tpl writing
36: [11:34:37] done
36/91 Test #36: testTplParser ....................   Passed    0.01 sec
test 37
      Start 37: testMol2ToMol
37: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FileParsers/testMol2ToMol
37: Test timeout computed to be: 9.99988e+06
37: [11:34:37] ---------------------------------------
37: [11:34:37] -- testing general mol2 file parsing --
37: [11:34:37] ---------------------------------------
37: [11:34:37] ------------------------------------
37: [11:34:37] -- DONE general mol2 file parsing --
37: [11:34:37] ------------------------------------
37: [11:34:37] ---------------------------------------
37: [11:34:37] -- testing subst arom groups in mol2 --
37: [11:34:37] ---------------------------------------
37: [11:34:37] ------------------------------------
37: [11:34:37] -- DONE subst arom groups in mol2 --
37: [11:34:37] ------------------------------------
37: [11:34:37] ---------------------------------------
37: [11:34:37] -- testing issue 3399798             --
37: [11:34:37] ---------------------------------------
37: [11:34:37] ------------------------------------
37: [11:34:37] -- DONE                           --
37: [11:34:37] ------------------------------------
37: [11:34:37] -----------------------------------
37: [11:34:37] -- testing GitHub issue #114     --
37: [11:34:37] -----------------------------------
37: [11:34:37] ------------------------------------
37: [11:34:37] -- DONE                           --
37: [11:34:37] ------------------------------------
37: [11:34:37] -----------------------------------
37: [11:34:37] -- testing GitHub issue #438: problems with metals in mol2 files  --
37: [11:34:37] -----------------------------------
37: [11:34:37] ------------------------------------
37: [11:34:37] -- DONE                           --
37: [11:34:37] ------------------------------------
37/91 Test #37: testMol2ToMol ....................   Passed    0.02 sec
test 38
      Start 38: testSubstructMatch
38: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Substruct/testSubstructMatch
38: Test timeout computed to be: 9.99988e+06
38:  ----------------- Test 1
38: Done
38: 
38:  ----------------- Test 2
38: Done
38: 
38:  ----------------- Test 3
38: Done
38: 
38:  ----------------- Test 4
38: Done
38: 
38:  ----------------- Test 5
38: Done
38: 
38:  ----------------- Test 5 QueryRoot
38: Done
38: 
38:  ----------------- Test 6 (Issue71 related)
38: Done
38: 
38:  ----------------- Testing serial numbers on recursive queries
38: Done
38: 
38: [11:34:37] -------------------------------------
38: [11:34:37]     Test chiral matching
38: [11:34:37]   done
38: [11:34:37] -------------------------------------
38: [11:34:37]     Test cis/trans matching
38: [11:34:37]   done
38: [11:34:37] -------------------------------------
38: [11:34:37]     Test GitHub issue 15
38: [11:34:37]   done
38: [11:34:37] -------------------------------------
38: [11:34:37]     Test GitHub issue 409
38: [11:34:37]   done
38/91 Test #38: testSubstructMatch ...............   Passed    0.01 sec
test 39
      Start 39: testReaction
39: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReaction
39: Test timeout computed to be: 9.99988e+06
39: [11:34:37] ********************************************************
39: [11:34:37] Testing Chemical Reactions 
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing ChemicalReaction infrastructure
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing simple reactions
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing ring formation reactions
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing reactions forming multiple products
39: smi: O=C1CNC(=O)CN1
39: 1: O=C1CNC(=O)CN1
39: 2: COOC
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing salt handling
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing Daylight parser
39: [11:34:37] SMARTS Parse Error: syntax error for input: [Q:1][C:2][C:3](=[O:4])[O:5]
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing MDL parser
39: O=C1CNC(=O)CN1
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing Reaction Validation.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] 	done
39: [11:34:37] mapped atoms in the reactants were not mapped in the products.
39:   unmapped numbers are: 4 
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing handling of query atoms in the products
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing Chirality handling
39: [11:34:37] F[C@@](Cl)(Br)I
39: [11:34:37] FC(Cl)(Br)I
39: [11:34:37] F[C@@](Cl)(Br)I
39: [11:34:37] FC(Cl)(Br)I
39: [11:34:37] F[C@](Cl)(Br)I
39: [11:34:37] FC(Cl)(Br)I
39: [11:34:37] F[C@@](Cl)(Br)I
39: [11:34:37] F[C@@](Cl)(Br)I
39: [11:34:37] F[C@@](Cl)(Br)I
39: [11:34:37] F[C@](Cl)(Br)I
39: [11:34:37] F[C@](Cl)(Br)I
39: [11:34:37] FC(Cl)(Br)I
39: [11:34:37] FC(Cl)(Br)I
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing Chirality handling (rxn)
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing handling of double bond stereochemistry
39: [11:34:37] [*]C(=O)/C=C/Cl
39: [11:34:37] C/C=C/Cl
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing sf.net Issue 1748846: bad bond orders in reaction products
39: [11:34:37] 1
39: [11:34:37] COCc1ccccc1
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing sf.net Issue 1804420: bad handling of query atoms in products.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing sf.net Issue 1882749: property handling in products.
39: [11:34:37] atom 0 in product 0 has multiple charge specifications.
39:  mass: 15.0001
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing parser exception handling
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing sf.net Issue 1920627: chirality flip in reactions.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing property transfer in reactions.
39: Oc1ccccn1
39: Oc1ccc[nH]1
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing sf.net Issue 2050085: recap failing on chiral molecules.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing bond queries in the product.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing sf.net Issue 2540021: bad handling of atoms with explicit Hs.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing using dots in the products to remove bonds.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing pickling and depickling reactions.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing preservation of atom flags from rxn files.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing transfer of conformer data from reactants->products.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing v3000 MDL parser
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing reaction SMARTS writer.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing reaction depictor.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing RXN file writer.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing reactant and product queries.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing Issue 3140490.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing string replacement in parsing.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing getReactingAtoms() 1.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing getReactingAtoms() 2
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing grouping parens in reactants1
39: [11:34:37] SMARTS Parse Error: syntax error for input: ([C:1](=O)O.[C:2]
39: [11:34:37] SMARTS Parse Error: syntax error for input: ([C:2]
39: [11:34:37] SMARTS Parse Error: syntax error for input: [C:1](=O)O).[C:2]
39: [11:34:37] SMARTS Parse Error: syntax error for input: [C:2])
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing grouping parens in reactants2
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing use of _protected property on atoms.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing use of adding recursive queries to a reaction.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing loss of chirality on innocent atoms.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing handling of agents in reaction smarts
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing github 233: chirality not preserved in nonmapped atoms
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing Daylight parser
39: [11:34:37] SMILES Parse Error: syntax error for input: [Q:1][C:2][C:3](=[O:4])[O:5]
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing github 243: dummy labels copied into products
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing github 290: seg fault while parsing rxn
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing reaction SMILES writer.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing handling of reaction agents.
39: [11:34:37] reactant 2 has no mapped atoms.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing the conversion of a molecule with Rxn role to a reaction and vice versa.
39: [11:34:37] >> Atoms within one molecule have different RXN roles.
39: [11:34:37] >> Fragment 0 not included in the reaction, atoms do not have a correct RXN role.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing grouping parens in products1
39: [11:34:37] SMARTS Parse Error: syntax error for input: ([C:1][C:2]
39: [11:34:37] SMARTS Parse Error: syntax error for input: ([C:2]
39: [11:34:37] SMARTS Parse Error: syntax error for input: [C:1][C:2])
39: [11:34:37] SMARTS Parse Error: syntax error for input: [C:1]).[C:2]
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing grouping parens in products2
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing RNX file parser with empty agent column
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing RNX from patent data
39: [11:34:37] reactant 0 has no mapped atoms.
39: [11:34:37] reactant 1 has no mapped atoms.
39: [11:34:37] reactant 3 has no mapped atoms.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 5 found multiple times.
39: [11:34:37] product atom-mapping number 6 found multiple times.
39: [11:34:37] product atom-mapping number 7 found multiple times.
39: [11:34:37] product atom-mapping number 8 found multiple times.
39: [11:34:37] product atom-mapping number 12 found multiple times.
39: [11:34:37] product atom-mapping number 9 found multiple times.
39: [11:34:37] product atom-mapping number 10 found multiple times.
39: [11:34:37] product atom-mapping number 11 found multiple times.
39: [11:34:37] reactant 0 has no mapped atoms.
39: [11:34:37] reactant 1 has no mapped atoms.
39: [11:34:37] reactant 3 has no mapped atoms.
39: [11:34:37] reactant atom-mapping number 19 found multiple times.
39: [11:34:37] reactant atom-mapping number 25 found multiple times.
39: [11:34:37] reactant atom-mapping number 20 found multiple times.
39: [11:34:37] reactant atom-mapping number 21 found multiple times.
39: [11:34:37] reactant atom-mapping number 22 found multiple times.
39: [11:34:37] reactant atom-mapping number 23 found multiple times.
39: [11:34:37] reactant atom-mapping number 24 found multiple times.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing products redundant atom mapping numbers in run_reactants
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing reaction substructure matching w/o agents
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing products with redundant atom mapping numbers and chirality
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: F[C@@](Cl)(Br)ONO[C@@](F)(Cl)Br
39: [11:34:37] product atom-mapping number 5 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 5 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: F[C@@](Cl)(Br)ONO[C@](F)(Cl)Br
39: [11:34:37] product atom-mapping number 5 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 5 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: F[C@@](Cl)(Br)ONO[C@@](F)(Cl)Br
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: F[C@@](Cl)(Br)O[C@](F)(Cl)Br
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: F[C@@](Cl)(Br)O[C@@](F)(Cl)Br
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing products with redundant atom mapping numbers and chirality
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 4 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] mapped atoms in the reactants were not mapped in the products.
39:   unmapped numbers are: 4 
39: [11:34:37] product atom-mapping number 3 found multiple times.
39: [11:34:37] product atom-mapping number 2 found multiple times.
39: [11:34:37] product atom-mapping number 1 found multiple times.
39: [11:34:37] mapped atoms in the reactants were not mapped in the products.
39:   unmapped numbers are: 4 
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing old pickle file with new agent version
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing introduction of new atoms with chirality
39: [11:34:37] product atom-mapping number 6 not found in reactants.
39: [11:34:37] product atom-mapping number 7 not found in reactants.
39: [11:34:37] product atom-mapping number 8 not found in reactants.
39: [11:34:37] F[C@](Cl)(I)N[C@H](Cl)Br
39: [11:34:37] [C@@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][Br:6]>>[C@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][CH2:7][C@H:8]([Cl:10])[CH3:9]
39: [11:34:37] product atom-mapping number 7 not found in reactants.
39: [11:34:37] product atom-mapping number 8 not found in reactants.
39: [11:34:37] product atom-mapping number 9 not found in reactants.
39: [11:34:37] product atom-mapping number 10 not found in reactants.
39: [11:34:37] mapped atoms in the reactants were not mapped in the products.
39:   unmapped numbers are: 6 
39: [11:34:37] C[C@H](F)CCC[C@@H](C)Cl
39: [11:34:37] [C@@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][Br:6]>>[C@H:1]([F:2])([CH3:3])[CH2:4][CH2:5][CH2:7][C@H:8]([Cl:10])[CH3:9]
39: [11:34:37] product atom-mapping number 7 not found in reactants.
39: [11:34:37] product atom-mapping number 8 not found in reactants.
39: [11:34:37] product atom-mapping number 9 not found in reactants.
39: [11:34:37] product atom-mapping number 10 not found in reactants.
39: [11:34:37] mapped atoms in the reactants were not mapped in the products.
39:   unmapped numbers are: 6 
39: [11:34:37] C[C@H](F)CCC[C@@H](C)Cl
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing round trip molFileValue
39: [11:34:37] 	done
39: [11:34:37] -------------------------------------
39: [11:34:37] Testing canonicatization of reactions
39: [11:34:37] *******************************************************
39/91 Test #39: testReaction .....................   Passed    0.06 sec
test 40
      Start 40: testReactionFingerprints
40: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/testReactionFingerprints
40: Test timeout computed to be: 9.99988e+06
40: [11:34:37] ********************************************************
40: [11:34:37] Testing Chemical Reaction Fingerprints 
40: [11:34:37] -------------------------------------
40: [11:34:37]     Test Reaction StructuralFingerprint
40: [11:34:37] -------------------------------------
40: [11:34:37]     Test Reaction DifferenceFingerprint
40: [11:34:37] *******************************************************
40/91 Test #40: testReactionFingerprints .........   Passed    0.02 sec
test 41
      Start 41: pyChemReactions
41: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemReactions/Wrap/testReactionWrapper.py"
41: Test timeout computed to be: 9.99988e+06
41: .......[11:34:37] mapped atoms in the reactants were not mapped in the products.
41:   unmapped numbers are: 3 
41: [11:34:37] mapped atoms in the reactants were not mapped in the products.
41:   unmapped numbers are: 3 
41: ..[11:34:37] reactant 2 has no mapped atoms.
41: [11:34:37] reactant 2 has no mapped atoms.
41: [11:34:37] product 1 has no mapped atoms.
41: ......[11:34:37] SMARTS Parse Error: syntax error for input: [C:1](=[O:2])Q
41: [11:34:37] SMARTS Parse Error: syntax error for input: [C:1](=[O:2])[N:3]Q
41: .[11:34:37] reactant atom-mapping number 1 found multiple times.
41: [11:34:37] product atom-mapping number 2 not found in reactants.
41: [11:34:37] mapped atoms in the reactants were not mapped in the products.
41:   unmapped numbers are: 4 
41: [11:34:37] product atom-mapping number 5 not found in reactants.
41: ....
41: ----------------------------------------------------------------------
41: Ran 20 tests in 0.015s
41: 
41: OK
41/91 Test #41: pyChemReactions ..................   Passed    0.10 sec
test 42
      Start 42: testChemTransforms
42: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ChemTransforms/testChemTransforms
42: Test timeout computed to be: 9.99988e+06
42: [11:34:37] ********************************************************
42: [11:34:37] Testing Chemical Transforms 
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing deleteSubstruct
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing replaceSubstruct
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] More testing of replaceSubstruct
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing replaceSidechains
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing replaceCore
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing replaceCore with labels
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing a former crash in replaceCore
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing that atom positions are correctly copied by replaceCore
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing murcko decomposition
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing replaceCore requiring dummy atoms
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing that atom positions are correctly copied by replaceSubstructs
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing handling of substituted non-carbon aromatic atoms
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing combination of molecules
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing adding recursive queries to a molecule
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing parsing query definition file
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing sf.net issue 275: Murcko decomposition with chiral atoms
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing fragmentOnBonds
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing fragmentOnBRICSBonds
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing fragmentOnSomeBonds
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing github issue 429: fragmentOnSomeBonds() should update implicit H count on aromatic heteroatoms when addDummies is False
42: [11:34:37] 	done
42: [11:34:37] -------------------------------------
42: [11:34:37] Testing github issue 430: fragmentOnSomeBonds() crashes if bond list is empty
42: [11:34:37] 	done
42: [11:34:37] *******************************************************
42/91 Test #42: testChemTransforms ...............   Passed    0.04 sec
test 43
      Start 43: testSubgraphs1
43: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs/testSubgraphs1
43: Test timeout computed to be: 9.99988e+06
43: -----------------------
43:  Subgraph retrieval
43: Finished
43: -----------------------
43:  testSubgraphs2a
43: Finished
43: -----------------------
43:  testSubgraphs2
43: Finished
43: -----------------------
43:  Path retrieval
43: Finished
43: -----------------------
43:  Path retrieval2
43: Finished
43: -----------------------
43:  Unique Subgraph retrieval
43: Finished
43: -----------------------
43:  testUniqueSubgraphs2
43: Finished
43: -----------------------
43:  testRootedSubgraphs
43: Finished
43: -----------------------
43:  testRootedPaths
43: Finished
43/91 Test #43: testSubgraphs1 ...................   Passed    0.24 sec
test 44
      Start 44: testSubgraphs2
44: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Subgraphs/testSubgraphs2
44: Test timeout computed to be: 9.99988e+06
44: -----------------------
44:  Test1: pathToSubmol
44: Finished
44: -----------------------
44:  Test2: Atom Environments
44: Finished
44: -----------------------
44:  Testing github Issue103: stereochemistry and pathToSubmol
44: Finished
44/91 Test #44: testSubgraphs2 ...................   Passed    0.01 sec
test 45
      Start 45: testFragCatalog
45: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/testFragCatalog
45: Test timeout computed to be: 9.99988e+06
45:  21
45: [11:34:37] ----- Test 1
45: [11:34:37] ---- Done
45: [11:34:37] ----- Test 2
45: [11:34:38] ---- Done
45: [11:34:38] ----- Test 3
45: [11:34:38] ---- Done
45: [11:34:38] ----- Test Issue 115
45: [11:34:38] ---- Done
45: [11:34:38] ----- Test Issue 117
45: [11:34:38] ---- Done
45: [11:34:38] ---- Test Issue294
45:   Watch memory usage.
45: [11:34:38] ---- Done
45/91 Test #45: testFragCatalog ..................   Passed    0.51 sec
test 46
      Start 46: pyFragCatalog
46: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FragCatalog/Wrap/rough_test.py"
46: Test timeout computed to be: 9.99988e+06
46: .........
46: ----------------------------------------------------------------------
46: Ran 9 tests in 0.113s
46: 
46: OK
46/91 Test #46: pyFragCatalog ....................   Passed    0.33 sec
test 47
      Start 47: testDescriptors
47: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/testDescriptors
47: Test timeout computed to be: 9.99988e+06
47: [11:34:38] -------------------------------------
47: [11:34:38]     Test Crippen parameter acquisition.
47: [11:34:38]   done
47: [11:34:38] -------------------------------------
47: [11:34:38]     Test Crippen calculation.
47: [11:34:38]   done
47: [11:34:38] -------------------------------------
47: [11:34:38]     Test Issue262: problems with Crippen calculation from pickles.
47: [11:34:38]   done
47: [11:34:38] -------------------------------------
47: [11:34:38]     Test AMW calculation.
47: [11:34:38]   done
47: [11:34:38] -------------------------------------
47: [11:34:38]     Test Exact MW calculation.
47: [11:34:38]   done
47: [11:34:38] -------------------------------------
47: [11:34:38]     Test Labute ASA descriptors.
47: [11:34:38]   done
47: [11:34:38] -------------------------------------
47: [11:34:38]     Test TPSA descriptors.
47: [11:34:38]   done
47: [11:34:38] -------------------------------------
47: [11:34:38]     Test Lipinski parameters.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test VSA descriptors.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test molecular formula calculation.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test Issue 3415534.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test Issue3433771: Bad definition for Crippen atom type O11.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test Issue252: Bad definitions for Crippen atom types.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test calculation of ChiVs.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test calculation of ChiNs.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test calculation of HallKierAlpha.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test calculation of Kappa1.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test calculation of Kappa2.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test calculation of Kappa3.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test Crippen atom type calculations.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test ring descriptors
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test other count descriptors.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test MQN
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test GitHub Issue 56.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test Github92: Bad Crippen atom type for pyrrole H.
47: [11:34:39]   done
47: [11:34:39] -------------------------------------
47: [11:34:39]     Test Github362: order dependence  in Kier-Hall descriptors.
47: [11:34:39]   done
47/91 Test #47: testDescriptors ..................   Passed    0.37 sec
test 48
      Start 48: pyMolDescriptors
48: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Descriptors/Wrap/testMolDescriptors.py"
48: Test timeout computed to be: 9.99988e+06
48: ..............
48: ----------------------------------------------------------------------
48: Ran 14 tests in 0.021s
48: 
48: OK
48/91 Test #48: pyMolDescriptors .................   Passed    0.17 sec
test 49
      Start 49: testFingerprints
49: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Fingerprints/testFingerprints
49: Test timeout computed to be: 9.99988e+06
49: [11:34:39] testing basics
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: Atoms:
49: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
49: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
49: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
49: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 10->1 order: 12 conj?: 1 aromatic?: 1
49: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: SMI: Oc1cc2[nH]cnc2c(O)n1
49: Atoms:
49: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
49: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
49: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
49: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 10->1 order: 12 conj?: 1 aromatic?: 1
49: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: c1(O)cc2[nH]cnc2c(O)n1
49: Atoms:
49: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	1 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	5 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
49: 	1 0->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
49: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
49: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 7->3 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: c1c(O)nc(O)c2c1[nH]cn2
49: Atoms:
49: 	0 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	2 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	3 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	5 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
49: 	1 1->2 order: 1 conj?: 1 aromatic?: 0
49: 	2 1->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 1 conj?: 1 aromatic?: 0
49: 	5 4->6 order: 12 conj?: 1 aromatic?: 1
49: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
49: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 10->6 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: c12cc(O)nc(O)c1nc[nH]2
49: Atoms:
49: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	3 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	4 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
49: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 1 conj?: 1 aromatic?: 0
49: 	3 2->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
49: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
49: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 10->0 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: [nH]1c2cc(O)nc(O)c2nc1
49: Atoms:
49: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	7 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	10 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
49: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 1 conj?: 1 aromatic?: 0
49: 	4 3->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
49: 	6 6->7 order: 1 conj?: 1 aromatic?: 0
49: 	7 6->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
49: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 8->1 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: c1[nH]c2cc(O)nc(O)c2n1
49: Atoms:
49: 	0 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	1 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	5 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	6 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	7 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
49: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 1 conj?: 1 aromatic?: 0
49: 	5 4->6 order: 12 conj?: 1 aromatic?: 1
49: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 7->8 order: 1 conj?: 1 aromatic?: 0
49: 	8 7->9 order: 12 conj?: 1 aromatic?: 1
49: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 9->2 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: n1c[nH]c2cc(O)nc(O)c21
49: Atoms:
49: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	1 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	2 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	10 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
49: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
49: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 1 conj?: 1 aromatic?: 0
49: 	9 8->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 10->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 10->3 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: c12c(cc(O)nc1O)[nH]cn2
49: Atoms:
49: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	2 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	6 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	7 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
49: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 1 conj?: 1 aromatic?: 0
49: 	4 3->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
49: [11:34:39] done
49: [11:34:39] testing subgraph invariants
49: [11:34:39] --------------------  fp1 
49: [11:34:39] --------------------  fp2 
49: [11:34:39] --------------------  fp2 
49: [11:34:39] done
49: [11:34:39] testing auto folding
49: [11:34:39] done
49: [11:34:39] testing basics alg2
49: [11:34:39] done
49: [11:34:39] testing subgraph invariants alg2
49: [11:34:39] --------------------  fp1 
49: [11:34:39] --------------------  fp2 
49: [11:34:39] --------------------  fp2 
49: [11:34:39] done
49: [11:34:39] testing similarity trends
49: 	6 6->7 order: 1 conj?: 1 aromatic?: 0
49: 	7 1->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
49: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 6->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 10->0 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: c1(O)c2c(cc(O)n1)[nH]cn2
49: Atoms:
49: 	0 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	1 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
49: 	1 0->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
49: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 3->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
49: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 7->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 10->2 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: Oc1c2c(cc(O)n1)[nH]cn2
49: Atoms:
49: 	0 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	2 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	3 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	4 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	5 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	6 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	10 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: Bonds:
49: 	0 0->1 order: 1 conj?: 1 aromatic?: 0
49: 	1 1->2 order: 12 conj?: 1 aromatic?: 1
49: 	2 2->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 1 conj?: 1 aromatic?: 0
49: 	6 5->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 3->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
49: 	9 9->10 order: 12 conj?: 1 aromatic?: 1
49: 	10 7->1 order: 12 conj?: 1 aromatic?: 1
49: 	11 10->2 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: SMI: n1c(O)cc2[nH]cnc2c1O
49: Atoms:
49: 	0 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	1 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	2 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: 	3 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	4 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	5 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	6 6 C chg: 0  deg: 2 exp: 3 imp: 1 hyb: 3 arom?: 1 chi: 0
49: 	7 7 N chg: 0  deg: 2 exp: 3 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	8 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	9 6 C chg: 0  deg: 3 exp: 4 imp: 0 hyb: 3 arom?: 1 chi: 0
49: 	10 8 O chg: 0  deg: 1 exp: 1 imp: 1 hyb: 3 arom?: 0 chi: 0
49: Bonds:
49: 	0 0->1 order: 12 conj?: 1 aromatic?: 1
49: 	1 1->2 order: 1 conj?: 1 aromatic?: 0
49: 	2 1->3 order: 12 conj?: 1 aromatic?: 1
49: 	3 3->4 order: 12 conj?: 1 aromatic?: 1
49: 	4 4->5 order: 12 conj?: 1 aromatic?: 1
49: 	5 5->6 order: 12 conj?: 1 aromatic?: 1
49: 	6 6->7 order: 12 conj?: 1 aromatic?: 1
49: 	7 7->8 order: 12 conj?: 1 aromatic?: 1
49: 	8 8->9 order: 12 conj?: 1 aromatic?: 1
49: 	9 9->10 order: 1 conj?: 1 aromatic?: 0
49: 	10 9->0 order: 12 conj?: 1 aromatic?: 1
49: 	11 8->4 order: 12 conj?: 1 aromatic?: 1
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: 
49: -------------------
49: 
49: [11:34:39] done
49: [11:34:39] testing basics layered fps
49: [11:34:39] done
49: [11:34:39] testing advanced layered fps
49: [11:34:39] done
49: [11:34:39] testing layered fps and queries
49: [11:34:39] done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Morgan Fingerprints.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Morgan Fingerprints using fromAtoms argument.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Morgan Fingerprints as bit vects.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Morgan Fingerprints with feature invariants.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test additional Morgan fingerprints options.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Atom Codes.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Atom Pairs.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Atom Pairs part 2.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Topological Torsions.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Bulk Topological Torsions.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Hashed Atom Pairs.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Hashed torsions.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Rooted Atom Pairs.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test ignoring atoms in Atom Pairs.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Rooted Topological Torsions.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test ignoring atoms in Topological Torsions.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test atom info from morgan fingerprints.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39] testing RDKit fingerprint options
49: [11:34:39] done
49: [11:34:39] -------------------------------------
49: [11:34:39] testing atom pair and torsions options
49: [11:34:39] done
49: [11:34:39] -------------------------------------
49: [11:34:39] testing MACCS key calculation
49: [11:34:39] done
49: [11:34:39] -------------------------------------
49: [11:34:39] testing RDKit fingerprints rooted at particular atoms
49: [11:34:39] done
49: [11:34:39] -------------------------------------
49: [11:34:39] testing RDKit fingerprints reporting atomBits
49: [11:34:39] done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Atom Pairs including info about chirality.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test Topological Torsions including info about chirality.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test GitHub Issue 25: fingerprint backwards compatibility.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test GitHub Issue 151: PatternFingerprint problems
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test 3D atom pairs.
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test GitHub Issue 195: GenMACCSKeys() raises an exception with an empty molecule
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test GitHub Issue 258: Bad pattern fingerprint for query molecule
49: [11:34:39]   done
49: [11:34:39] -------------------------------------
49: [11:34:39]     Test GitHub Issue 334: explicit Hs in SMILES modifies atom pair (and topological torsion) FP.
49: [11:34:39]   done
49/91 Test #49: testFingerprints .................   Passed    0.23 sec
test 50
      Start 50: testPartialCharges
50: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/testPartialCharges
50: Test timeout computed to be: 9.99988e+06
50: [11:34:39] -------------------------------------
50: [11:34:39]     Test GitHub issue 485: Gasteiger charge calculation fails with hexavalent sulfur
50: [11:34:39]   done
50/91 Test #50: testPartialCharges ...............   Passed    0.02 sec
test 51
      Start 51: pyPartialCharges
51: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/PartialCharges/Wrap/testPartialCharges.py"
51: Test timeout computed to be: 9.99988e+06
51: .....
51: ----------------------------------------------------------------------
51: Ran 5 tests in 0.133s
51: 
51: OK
51/91 Test #51: pyPartialCharges .................   Passed    0.24 sec
test 52
      Start 52: testMolTransforms
52: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/testMolTransforms
52: Test timeout computed to be: 9.99988e+06
52: ***********************************************************
52: Testing MolTransforms
52: 	---------------------------------
52: 	 test1Canonicalization 
52: 
52: 	---------------------------------
52: 	 testGetSetBondLength 
52: 
52: 	---------------------------------
52: 	 testGetSetAngle 
52: 
52: 	---------------------------------
52: 	 testGetSetDihedral 
52: 
52: ***********************************************************
52/91 Test #52: testMolTransforms ................   Passed    0.02 sec
test 53
      Start 53: pyMolTransforms
53: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolTransforms/Wrap/testMolTransforms.py"
53: Test timeout computed to be: 9.99988e+06
53: ....
53: ----------------------------------------------------------------------
53: Ran 4 tests in 0.018s
53: 
53: OK
53/91 Test #53: pyMolTransforms ..................   Passed    0.12 sec
test 54
      Start 54: testMMFFForceFieldHelpers
54: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFForceFieldHelpers
54: Test timeout computed to be: 9.99988e+06
54: [11:34:39] -------------------------------------
54: [11:34:39]     Test MMFF atom types.
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing MMFF builder tools.
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing MMFF builder+minimization.
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing Issue239.
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing Issue242.
54: [11:34:40] E1: 169.67
54: [11:34:40] E2: 162.526
54: [11:34:40] E1: 99.6001
54: [11:34:40] E2: 99.6001
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing github 308: crash during MMFF parameterization .
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing SFIssue1653802.
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing SFIssue2378119.
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing bulk MMFF (regression to check that things run).
54: [11:34:40] Mol:1
54: [11:34:40] Mol:2
54: [11:34:40] Mol:3
54: [11:34:40] Mol:4
54: [11:34:40] Mol:5
54: [11:34:40] Mol:6
54: [11:34:40] Mol:7
54: [11:34:40] Mol:8
54: [11:34:40] Mol:9
54: [11:34:40] Mol:10
54: [11:34:40] Mol:11
54: [11:34:40] Mol:12
54: [11:34:40] Mol:13
54: [11:34:40] Mol:14
54: [11:34:40] Mol:15
54: [11:34:40] Mol:16
54: [11:34:40] Mol:17
54: [11:34:40] Mol:18
54: [11:34:40] Mol:19
54: [11:34:40] Mol:20
54: [11:34:40] Mol:21
54: [11:34:40] Mol:22
54: [11:34:40] Mol:23
54: [11:34:40] Mol:24
54: [11:34:40] Mol:25
54: [11:34:40] Mol:26
54: [11:34:40] Mol:27
54: [11:34:40] Mol:28
54: [11:34:40] Mol:29
54: [11:34:40] Mol:30
54: [11:34:40] Mol:31
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Test MMFF force-field parameter getters.
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing github 162: Incorrect SMILES after MMFF parameterization .
54: [11:34:40]   done
54: [11:34:40] -------------------------------------
54: [11:34:40]     Testing github 224: crash during MMFF parameterization .
54: [11:34:40]   done
54/91 Test #54: testMMFFForceFieldHelpers ........   Passed    0.55 sec
test 55
      Start 55: testUFFForceFieldHelpers
55: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/UFF/testUFFForceFieldHelpers
55: Test timeout computed to be: 9.99988e+06
55: [11:34:40] -------------------------------------
55: [11:34:40]     Test UFF atom labels.
55: [11:34:40] UFFTYPER: Warning: hybridization set to SP3 for atom 5
55: [11:34:40]   done
55: [11:34:40] -------------------------------------
55: [11:34:40]     Test UFF atom typer.
55: [11:34:40] UFFTYPER: Warning: hybridization set to SP3 for atom 0
55: [11:34:40] UFFTYPER: Warning: hybridization set to SP3 for atom 0
55: [11:34:40] UFFTYPER: Warning: hybridization set to SP3 for atom 0
55: [11:34:40] UFFTYPER: Warning: hybridization set to SP3 for atom 1
55: [11:34:40]   done
55: [11:34:40] -------------------------------------
55: [11:34:40]     Testing UFF builder tools.
55: [11:34:40]   done
55: [11:34:40] -------------------------------------
55: [11:34:40]     Testing UFF builder+minimization.
55: [11:34:40]   done
55: [11:34:40] -------------------------------------
55: [11:34:40]     Testing bulk UFF (regression to check that things run).
55: [11:34:40] Mol:1
55: [11:34:40] Mol:2
55: [11:34:40] Mol:3
55: [11:34:40] Mol:4
55: [11:34:40] Mol:5
55: [11:34:40] Mol:6
55: [11:34:40] Mol:7
55: [11:34:40] Mol:8
55: [11:34:40] Mol:9
55: [11:34:40] Mol:10
55: [11:34:40] Mol:11
55: [11:34:41] Mol:12
55: [11:34:41] Mol:13
55: [11:34:41] Mol:14
55: [11:34:41] Mol:15
55: [11:34:41] Mol:16
55: [11:34:41] Mol:17
55: [11:34:41] Mol:18
55: [11:34:41] Mol:19
55: [11:34:41] Mol:20
55: [11:34:41] Mol:21
55: [11:34:41] Mol:22
55: [11:34:41] Mol:23
55: [11:34:41] Mol:24
55: [11:34:41] Mol:25
55: [11:34:41] Mol:26
55: [11:34:41] Mol:27
55: [11:34:41] Mol:28
55: [11:34:41] Mol:29
55: [11:34:41] Mol:30
55: [11:34:41] Mol:31
55: [11:34:41]   done
55: [11:34:41] -------------------------------------
55: [11:34:41]     Testing UFF special cases.
55: [11:34:41] UFFTYPER: Warning: hybridization set to SP3 for atom 0
55: [11:34:41] UFFTYPER: Unrecognized charge state for atom: 0
55: [11:34:41]   done
55: [11:34:41] -------------------------------------
55: [11:34:41]     Testing Issue239.
55: [11:34:41]   done
55: [11:34:41] -------------------------------------
55: [11:34:41]     Testing SFIssue1653802.
55: [11:34:41]   done
55: [11:34:41] -------------------------------------
55: [11:34:41]     Testing SFIssue2378119.
55: [11:34:41]   done
55: [11:34:41] -------------------------------------
55: [11:34:41]     Test UFF force-field parameter getters.
55: [11:34:41] -------------------------------------
55: [11:34:41]     Testing handling missing parameters.
55: [11:34:41] UFFTYPER: Unrecognized hybridization for atom: 0
55: [11:34:41] UFFTYPER: Unrecognized atom type: Cu (0)
55: [11:34:41] UFFTYPER: Unrecognized hybridization for atom: 0
55: [11:34:41] UFFTYPER: Unrecognized atom type: Cu (0)
55: [11:34:41]   done
55: [11:34:41] -------------------------------------
55: [11:34:41]     Testing SFIssue3009337.
55: [11:34:41] UFFTYPER: Warning: hybridization set to SP3 for atom 2
55: [11:34:41] UFFTYPER: Warning: hybridization set to SP3 for atom 2
55: [11:34:41]   done
55: [11:34:41] -------------------------------------
55: [11:34:41]     Testing GitHubIssue62.
55: [11:34:41] beta-lactam 38.6865
55: [11:34:41] cyclopropanone 174.698
55: [11:34:41] aziridine 337.986
55: [11:34:41] aziridinone 115.248
55: [11:34:41] isobutene 2.48217
55: [11:34:41] acetone 1.91788
55: [11:34:41] cyclopentanone 10.1648
55: [11:34:41] cyclopropene 98.4685
55: [11:34:41] cyclobutene 39.0782
55: [11:34:41] cyclopropane 267.236
55: [11:34:41] gamma-lactam 15.7471
55: [11:34:41] trans-2,3-diphenylcyclopropan-1-one 202.121
55: [11:34:41] cis-2,3-diphenylcyclopropan-1-one 205.539
55: [11:34:41] 2,3-diphenylcyclopropa-2-en-1-one 20.0443
55: [11:34:41] cyclopropylidencyclobutane 218.986
55: [11:34:41] diphenylmethylidencyclobutane 79.6273
55: [11:34:41]   done
55/91 Test #55: testUFFForceFieldHelpers .........   Passed    1.08 sec
test 56
      Start 56: pyForceFieldHelpers
56: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ForceFieldHelpers/Wrap/testHelpers.py"
56: Test timeout computed to be: 9.99988e+06
56: ....[11:34:41] UFFTYPER: Unrecognized hybridization for atom: 0
56: [11:34:41] UFFTYPER: Unrecognized atom type: Cu (0)
56: ......
56: ----------------------------------------------------------------------
56: Ran 10 tests in 0.024s
56: 
56: OK
56/91 Test #56: pyForceFieldHelpers ..............   Passed    0.11 sec
test 57
      Start 57: testDistGeomHelpers
57: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/testDistGeomHelpers
57: Test timeout computed to be: 9.99988e+06
57: [11:34:41] ********************************************************
57: [11:34:41] Testing DistGeomHelpers
57: [11:34:41] 	---------------------------------
57: [11:34:41] 	 test2 
57: 
57: go
57: -------------------------------------
57: 
57: [11:34:41] 	---------------------------------
57: [11:34:41] 	 test3 
57: 
57: [11:34:41] 	---------------------------------
57: [11:34:41] 	 test4 
57: 
57: [11:34:41] 	---------------------------------
57: [11:34:41] 	 test5 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test6 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test15Dists 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test Issue 215 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testMultipleConfs 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testIssue227 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testIssue236 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testOrdering 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testIssue244 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testIssue251 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testIssue276 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testIssue284 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testIssue285 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testIssue355 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 testRandomCoords 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test sf.net issue 1989539 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test sf.net issue 2091864 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test constrained embedding 
57: 
57: [11:34:42] ssd: 0.051827
57: [11:34:42] ssd: 0.0583638
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test sf.net issue 2091974 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test sf.net issue 2835784 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test sf.net issue 3019283 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test sf.net issue 3238580 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test sf.net issue 3483968 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test github issue 55 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test1 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test multi-threading 
57: 
57: [11:34:42] 	---------------------------------
57: [11:34:42] 	 test github issue 256: handling of zero-atom molecules
57: 
57: [11:34:42] *******************************************************
57/91 Test #57: testDistGeomHelpers ..............   Passed    0.61 sec
test 58
      Start 58: pyDistGeom
58: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/DistGeomHelpers/Wrap/testDistGeom.py"
58: Test timeout computed to be: 9.99988e+06
58: .........
58: ----------------------------------------------------------------------
58: Ran 9 tests in 4.082s
58: 
58: OK
58/91 Test #58: pyDistGeom .......................   Passed    4.18 sec
test 59
      Start 59: testMolAlign
59: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/testMolAlign
59: Test timeout computed to be: 9.99988e+06
59: ***********************************************************
59: Testing MolAlign
59: 	---------------------------------
59: 	 test1MolAlign 
59: 
59: 	---------------------------------
59: 	 test2AtomMap 
59: 
59: 	---------------------------------
59: 	 test3Weights 
59: 
59: 	---------------------------------
59: 	 testIssue241 
59: 
59: 	---------------------------------
59: 	 testMMFFO3A 
59: 
59: 	---------------------------------
59: 	 testMMFFO3A with pre-computed dmat and MolHistogram
59: 
59: 	---------------------------------
59: 	 testMMFFO3A with constraints
59: 
59: 	---------------------------------
59: 	 testMMFFO3A with variable weight constraints followed by local-only optimization
59: 
59: 	---------------------------------
59: 	 testCrippenO3A 
59: 
59: 	---------------------------------
59: 	 testCrippenO3A with pre-computed dmat and MolHistogram
59: 
59: 	---------------------------------
59: 	 testCrippenO3A with constraints
59: 
59: 	---------------------------------
59: 	 testCrippenO3A with variable weight constraints followed by local-only optimization
59: 
59: 	---------------------------------
59: 	 test getO3AForProbeConfs
59: 
59: ***********************************************************
59: [11:34:51]   done
59/91 Test #59: testMolAlign .....................   Passed    5.33 sec
test 60
      Start 60: pyMolAlign
60: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolAlign/Wrap/testMolAlign.py"
60: Test timeout computed to be: 9.99988e+06
60: ...............
60: ----------------------------------------------------------------------
60: Ran 15 tests in 6.356s
60: 
60: OK
60: Testing MolAlign Wrappers
60/91 Test #60: pyMolAlign .......................   Passed    6.45 sec
test 61
      Start 61: testFeatures
61: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/testFeatures
61: Test timeout computed to be: 9.99988e+06
61: [11:34:58] -------------------------------------
61: [11:34:58] AtomType parser testing.
61: [11:34:58] SMARTS Parse Error: syntax error for input: [$([!$([NH0]);N,O,$([S]),$([N,O)])]
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] FeatureDefinition parser testing.
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] Test pulling feat defs from a string.
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] FeatureDef functionality testing.
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] FeatureFactory testing.
61: [11:34:58] 1
61: [11:34:58] 2
61: [11:34:58] 3
61: [11:34:58] 4
61: [11:34:58] 5
61: [11:34:58] 6
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] Feature Location testing.
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] Test building a FeatureFactory from a file
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] Testing Issue 224.
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] Testing Issue 225.
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] Test Issue346
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] Test Issue347
61: [11:34:58]   done
61: [11:34:58] -------------------------------------
61: [11:34:58] Testing Issue 348.
61: [11:34:58] SMARTS Parse Error: syntax error for input: [C[C]
61: [11:34:58] -------------------------------------
61: [11:34:58] Testing Nested AtomType definitions.
61: [$([$([$([C;!$(C=[O,N,P,S]);!$(C#N)]),c]);R])]
61: [11:34:58] -------------------------------------
61: [11:34:58] Testing Github Issue #252: crash when calling getPos() with no conformer.
61: [11:34:58]      expect a precondition failure message below
61: [11:34:58] 
61: 
61: ****
61: Pre-condition Violation
61: molecule has no conformers
61: Violation occurred on line 37 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
61: Failed Expression: dp_mol->getNumConformers()
61: ****
61: 
61: [11:34:58]    Done
61/91 Test #61: testFeatures .....................   Passed    0.02 sec
test 62
      Start 62: pyChemicalFeatures
62: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/Wrap/testChemicalFeatures.py"
62: Test timeout computed to be: 9.99988e+06
62: ....[11:34:58] SMARTS Parse Error: syntax error for input: [N,O;!HQ]
62: ...
62: ----------------------------------------------------------------------
62: Ran 7 tests in 0.010s
62: 
62: OK
62/91 Test #62: pyChemicalFeatures ...............   Passed    0.10 sec
test 63
      Start 63: testShapeHelpers
63: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/testShapeHelpers
63: Test timeout computed to be: 9.99988e+06
63: ***********************************************************
63: Testing ShapeHelpers
63: 	---------------------------------
63: 	 test1Encode 
63: 
63: 	---------------------------------
63: 	 test2Compare 
63: 
63: ***********************************************************
63/91 Test #63: testShapeHelpers .................   Passed    0.02 sec
test 64
      Start 64: pyShapeHelpers
64: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ShapeHelpers/Wrap/testShapeHelpers.py"
64: Test timeout computed to be: 9.99988e+06
64: .
64: ----------------------------------------------------------------------
64: Ran 1 test in 0.024s
64: 
64: OK
64: Testing Shape Helpers wrapper
64/91 Test #64: pyShapeHelpers ...................   Passed    0.11 sec
test 65
      Start 65: testMolCatalog
65: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/testMolCatalog
65: Test timeout computed to be: 9.99988e+06
65: [11:34:58] >>------------- Test 1
65: [11:34:58] <<-------------- Done
65/91 Test #65: testMolCatalog ...................   Passed    0.01 sec
test 66
      Start 66: pyMolCatalog
66: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolCatalog/Wrap/rough_test.py"
66: Test timeout computed to be: 9.99988e+06
66: .
66: ----------------------------------------------------------------------
66: Ran 1 test in 0.007s
66: 
66: OK
66/91 Test #66: pyMolCatalog .....................   Passed    0.10 sec
test 67
      Start 67: moldraw2DTest1
67: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/moldraw2DTest1
67: Test timeout computed to be: 9.99988e+06
67:  ----------------- Test 1
67:  Done
67:  ----------------- Test 3
67:  Done
67:  ----------------- Test 4
67:  Done
67:  ----------------- Test 5
67:  Done
67/91 Test #67: moldraw2DTest1 ...................   Passed    0.02 sec
test 68
      Start 68: pyMolDraw2D
68: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolDraw2D/Wrap/testMolDraw2D.py"
68: Test timeout computed to be: 9.99988e+06
68: ..
68: ----------------------------------------------------------------------
68: Ran 2 tests in 0.001s
68: 
68: OK
68/91 Test #68: pyMolDraw2D ......................   Passed    0.11 sec
test 69
      Start 69: testFMCS
69: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/testFMCS
69: Test timeout computed to be: 9.99988e+06
69: [11:34:58] *******************************************************
69: [11:34:58] FMCS Unit Test 
69: [11:34:58] 
69: -------------------------------------
69: [11:34:58] Testing github #481 : order dependence in FMCS with chirality
69: [11:34:58] 	done
69: [11:34:58] 
69: -------------------------------------
69: [11:34:58] Testing FMCS testChirality
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = C(F)C useChirality = 0
69: res sub = 1 size=3
69: MCS: [#9]-[#6]-[#6] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = C(F)C useChirality = 1
69: res sub = 1 size=3
69: MCS: [#9]-[#6]-[#6] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = CC[C@H](F)Cl query = CCC useChirality = 0
69: res sub = 1 size=3
69: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = CC[C@H](F)Cl query = CCC useChirality = 1
69: res sub = 1 size=3
69: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = CCC(F)Cl query = CC useChirality = 0
69: res sub = 1 size=2
69: MCS: [#6]-[#6] 2 atoms, 1 bonds
69: [11:34:58] -------------------------------------
69: test target = CCC(F)Cl query = CC useChirality = 1
69: res sub = 1 size=2
69: MCS: [#6]-[#6] 2 atoms, 1 bonds
69: [11:34:58] -------------------------------------
69: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 0
69: res sub = 1 size=4
69: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = C[C@H](F)CCl query = C[C@H](F)C useChirality = 1
69: res sub = 1 size=4
69: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 0
69: res sub = 1 size=4
69: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = C[C@H](F)CCl query = C[C@@H](F)C useChirality = 1
69: res sub = 1 size=4
69: MCS: [#6]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = CC(F)C useChirality = 0
69: res sub = 0 size=0
69: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = CC(F)C useChirality = 1
69: res sub = 0 size=0
69: MCS: [#6]-[#6]-[#9] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = OC(F)C useChirality = 0
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = OC(F)C useChirality = 1
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 0
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = O[C@H](F)C useChirality = 1
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 0
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = O[C@@H](F)C useChirality = 1
69: res sub = 0 size=0
69: MCS:  0 atoms, 0 bonds
69: [11:34:58] -------------------------------------
69: test target = OC(F)CCl query = OC(F)C useChirality = 0
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = OC(F)CCl query = OC(F)C useChirality = 1
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = OC(F)CCl query = O[C@H](F)C useChirality = 0
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = OC(F)CCl query = O[C@H](F)C useChirality = 1
69: res sub = 0 size=0
69: MCS:  0 atoms, 0 bonds
69: [11:34:58] -------------------------------------
69: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 0
69: res sub = 1 size=4
69: MCS: [#8]-[#6](-[#9])-[#6] 4 atoms, 3 bonds
69: [11:34:58] -------------------------------------
69: test target = OC(F)CCl query = O[C@@H](F)C useChirality = 1
69: res sub = 0 size=0
69: MCS:  0 atoms, 0 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 0
69: res sub = 1 size=3
69: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = O[C@H]C useChirality = 1
69: res sub = 0 size=0
69: MCS:  0 atoms, 0 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 0
69: res sub = 1 size=3
69: MCS: [#8]-[#6]-[#6] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = O[C@H](F)CCl query = O[C@@H]C useChirality = 1
69: res sub = 0 size=0
69: MCS:  0 atoms, 0 bonds
69: 
69: 0. <<<<<<<<< actual MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds >>>>>>>
69: [11:34:58] -------------------------------------
69: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 0
69: res sub = 1 size=3
69: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
69: [11:34:58] -------------------------------------
69: test target = CC[C@H](F)Cl query = CC[C@H] useChirality = 1
69: res sub = 0 size=0
69: MCS: [#6]-[#6] 2 atoms, 1 bonds
69: 	done
69: [11:34:58] -------------------------------------
69: [11:34:58] Testing FMCS testJSONParameters
69: [11:34:58] 	done
69: [11:34:58] -------------------------------------
69: [11:34:58] FMCS test1Basics()
69: MCS: [#6]-[#6]1-[#6]-[#6]-[#6]-[#6]-[#6]-1 7 atoms, 7 bonds
69: Time elapsed 0.000 seconds
69: [11:34:58] 	done
69: [11:34:58] -------------------------------------
69: [11:34:58] Testing FMCS test32
69: 
69:  test32()
69: MCS: [#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#6]=[#6]-[#6](-[#7]-[#6]1:[#6]:[#6](-[#16](-[#7]2-[#6]-[#6]-[#8]-[#6]-[#6]-2)(=[#8])=[#8]):[#6]:[#6]:[#6]:1-[#7](-[#6]-[#6])-[#6]-[#6])=[#8] 31 atoms, 33 bonds
69: Time elapsed 0.065 seconds
69: [11:34:58] 	done
69: [11:34:58] -------------------------------------
69: [11:34:58] Testing FMCS test190
69: 
69:  test190()
69: MCS: [#6]1:[#6]:[#6]2:[#8]:[#6](-[#6]3:[#6]:[#6](-[#7]-[#6](=[#8])-[#6]):[#6]:[#6]:[#6]:3):[#7]:[#6]:2:[#6]:[#6]:1 19 atoms, 21 bonds
69: Time elapsed 0.013 seconds
69: [11:34:58] 	done
69: [11:34:58] -------------------------------------
69: [11:34:58] Testing FMCS test3
69: 
69:  test3()
69: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6]-[#6](=[#8])-[#7]-[#6]-[#6]-[#6]-[#6] 14 atoms, 14 bonds
69: Time elapsed 0.016 seconds
69: [11:34:58] 	done
69: [11:34:58] -------------------------------------
69: [11:34:58] Testing FMCS testSimpleFast
69: 
69: testSimpleFast()
69: MCS: [#6]-[#8]-[#6]-[#6]1:[#6]:[#7]:[#6]:[#6](:[#6]:1):[#7]:[#6]1:[#6]:[#6]:[#6]:[#6](:[#6]:1)-[#8]-[#6]1:[#6]:[#6]:[#6](:[#6]:[#6]:1)-[#17] 24 atoms, 26 bonds
69: Time elapsed 0.120 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS testSimple
69: 
69: testSimple()
69: MCS: [#6]-[#6]-[#6](-[#7]-[#6](=[#8])-[#6]-[#7]-[#6](=[#8])-[#6])-[#6](-[#7]-[#6])=[#8] 15 atoms, 14 bonds
69: Time elapsed 0.180 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS testSegFault
69: 
69: testSegFault()
69: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1 6 atoms, 6 bonds
69: Time elapsed 0.004 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS testThreshold
69: 
69: testThreshold()
69: MCS: [#6]-[#6]-[#6] 3 atoms, 2 bonds
69: Time elapsed 0.000 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS testRing1
69: 
69: testRing1()
69: MCS: [#6]1:[#6]:[#7]:[#6](:[#6]:[#6]:1)-[#6](=[#8])-[#8]-[#6](-[#6])-[#6] 12 atoms, 12 bonds
69: Time elapsed 0.003 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS testAtomCompareIsotopes
69: 
69: testAtomCompareIsotopes()
69: MCS: [0*]-[0*]-[13*] 3 atoms, 2 bonds
69: Time elapsed 0.000 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS testAtomCompareAnyAtom
69: 
69: testAtomCompareAnyAtom()
69: MCS: [#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
69: Time elapsed 0.000 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS testAtomCompareAnyAtomBond
69: 
69: testAtomCompareAnyAtom()
69: MCS: [#6]1-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:[#6]-,:1=,-[#6,#7,#8,#9,#17] 7 atoms, 7 bonds
69: Time elapsed 0.000 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS test18
69: 
69: test18()
69: Query +MAP [CH3:0][c:1]1[n:2][c:3]([CH2:4][N:5]([CH2:14][CH2:15][CH2:16][CH2:17][NH2:18])[CH:6]([CH3:7])[c:8]2[cH:13][cH:12][cH:11][cH:10][n:9]2)[cH:19][cH:20][cH:21]1
69: MCS: [#6](:[#7]:[#6]-[#6]-[#7](-[#6](-[#6])-[#6]1:[#7]:[#6]:[#6]:[#6]:[#6]:1)-[#6]-[#6]-[#6]-[#6]-[#7]):[#6]:[#6]:[#6] 21 atoms, 21 bonds
69: Time elapsed 0.009 seconds
69: [11:34:59] 	done
69: [11:34:59] -------------------------------------
69: [11:34:59] Testing FMCS test504
69: 
69: test504()
69: Query +MAP [CH2:0]([CH2:1][CH2:2][NH:3][C:4](=[O:16])[CH:5]1[CH2:6][CH:7]1[c:8]1[c:15][cH:14][c:12]([Cl:13])[c:10]([Cl:11])[c:9]1)[CH2:17][CH2:18][N:19]1[CH2:20][CH2:21][CH:22]([NH:23][C:24]([NH:25][c:26]2[cH:27][cH:28][c:29]([Cl:30])[cH:31][cH:32]2)=[O:33])[CH2:34]1
69: MCS: [#6](-[#6]-[#6]-[#7]-[#6](-[#6]1-[#6]-[#6]-1-[#6]1:[#6]:[#6](-[#17]):[#6](:[#6]:[#6]:1)-[#17])=[#8])-[#6]-[#6]-[#7](-[#6]-[#6]-[#6]-[#7]-[#6](-[#7]-[#6]1:[#6]:[#6]:[#6]:[#6]:[#6]:1)=[#8])-[#6] 34 atoms, 36 bonds
69: Time elapsed 0.181 seconds
69: [11:34:59] 	done
69: TOTAL Time elapsed 0.63 seconds
69: [11:34:59] *******************************************************
69/91 Test #69: testFMCS .........................   Passed    0.65 sec
test 70
      Start 70: pyFMCS
70: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Wrap/testFMCS.py"
70: Test timeout computed to be: 9.99988e+06
70: ......
70: ----------------------------------------------------------------------
70: Ran 6 tests in 1.001s
70: 
70: OK
70/91 Test #70: pyFMCS ...........................   Passed    1.22 sec
test 71
      Start 71: FMCStest
71: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/FMCS/Test/FMCStest
71: Test timeout computed to be: 9.99988e+06
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_15113.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_16613.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_30745.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_30861.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_31495.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_34869.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_36158.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_36559.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_37434.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_39147.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_43754.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_44011.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_44158.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_48076.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_48961.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_49648.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_49703.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_51128.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_51343.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_51842.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_54554.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_100_55749.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_17256.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20244.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_20245.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30149.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_30499.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_36186.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_39262.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_43966.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_45279.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_48029.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49064.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_49801.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_50681.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_54039.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58265.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58358.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_58866.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10188_60810.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21358.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_21597.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30111.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_30349.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31746.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_31822.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_35220.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37603.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_37964.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_39508.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42164.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_42577.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_44072.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_45522.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46700.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46719.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_46744.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_48517.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_49087.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_50034.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_51475.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53483.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_53506.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_54598.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55614.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_55737.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57090.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57705.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_57785.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58463.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
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71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_58700.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61003.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10193_61349.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10260_38526.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10260_50778.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10260_52179.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10260_54285.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_30224.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_31222.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37349.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37369.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37465.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_37541.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_38371.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44314.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_44578.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_45765.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_46281.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_47928.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_50624.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51341.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51662.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_51767.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53081.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53396.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_53407.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_58823.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_59190.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_60672.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10280_61176.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10434_20905.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30074.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30175.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10434_30423.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10434_31555.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10434_34878.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10434_35926.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10434_42168.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_20859.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_30060.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_30061.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_30606.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_30866.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_31249.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_34921.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_35188.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_36636.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_37466.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_39202.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_43952.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_49345.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_49591.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_49854.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_51416.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_53537.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_58879.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_60679.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_107_61269.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_20600.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_20859.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_30060.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_30606.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_30866.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_31558.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_35188.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_37466.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_43875.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_48911.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_49591.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_49854.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_57887.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_60679.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_108_6857.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_15478.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_20853.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30840.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30862.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30918.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_30994.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31014.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31508.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_31623.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35003.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35004.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35281.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_35957.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36520.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_36641.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_38586.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_44431.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_45093.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_51302.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5247.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_52937.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_57198.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_5739.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_10980_6535.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20205.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_20986.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_30091.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34698.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_34705.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37038.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37272.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_37447.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38909.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_38953.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_39472.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_45825.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_47179.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49028.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_49860.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_51984.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53395.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_53826.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54121.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_54530.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_55738.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_57725.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11140_58590.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11365_20432.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11365_30331.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11365_37956.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11365_48114.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11365_58566.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34731.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_34818.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37318.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37339.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_37564.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39504.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_39561.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46082.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_46089.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47349.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_47757.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_51593.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_54754.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58262.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11489_58958.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_16827.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_20503.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_20724.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_30254.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_30321.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_30572.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_31116.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_31281.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_31443.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_34747.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_34920.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_35040.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_36623.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_37136.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_37208.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_38298.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_38554.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_39088.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_39543.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_44049.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_44562.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_45180.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_45867.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_46087.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_46829.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_47546.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_48395.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_50461.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_50765.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_51669.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_52381.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_57231.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_114_58246.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_30999.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31021.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_31650.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_35011.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_37014.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_44598.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_48446.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50614.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50615.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_50618.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11534_51950.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11575_31616.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11575_38381.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11575_45757.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11575_46816.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11575_50701.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11575_54049.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11575_57890.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11575_61045.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11631_30194.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11631_31421.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11631_35538.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11631_55727.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11631_60676.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11631_61130.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_11631_6444.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_15623.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_20096.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_21591.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_30184.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_30380.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_30745.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_30861.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_31619.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_34869.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_35284.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_36158.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_36915.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_37434.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_37541.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_37677.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_38837.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_39530.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_43793.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_44158.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_44164.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_44579.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_44593.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_44692.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_44914.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_45878.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_48050.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_48706.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_48944.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_48961.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_49880.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_50055.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_50512.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_51064.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_53537.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_55749.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_58879.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_121_6876.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12209_44664.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12209_46451.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12209_50640.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12209_56102.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12209_58015.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59089.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12209_59092.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12209_61340.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12252_31458.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12252_38481.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12252_42104.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49475.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12252_49933.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12252_50558.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_126_37249.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_126_39117.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_126_48227.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_126_48229.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_126_53969.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_126_54262.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_126_55353.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_126_61212.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20250.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20506.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20626.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_20689.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_21358.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30158.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_30349.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_34843.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_35220.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36318.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_36800.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_39349.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45385.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_45676.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46700.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_46719.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_48517.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_52690.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_53483.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_55435.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_56102.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58015.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58375.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
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71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_12952_58700.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_16724.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_2710.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_30128.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_31250.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_35519.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_36905.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_46788.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_4737.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_55736.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_13001_57473.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_16146.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_30313.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_30539.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_30653.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_30988.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_31179.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_31339.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_3525.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_36886.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_37020.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_38128.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_43952.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_45210.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_45899.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_47889.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_51800.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_53158.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_5330.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_55648.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_56096.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_57287.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_57399.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_57606.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_58470.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_130_60894.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_15010.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_20304.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_20542.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_20788.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_21358.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_30349.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_31103.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_31764.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_31822.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_35220.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_37964.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_42164.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_44072.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_45522.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_46719.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_46744.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_48416.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_49740.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_50034.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_50640.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_53483.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_53506.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_53814.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_55435.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_56074.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_56107.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_57090.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_57705.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_57785.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_57861.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_58583.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_59089.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_15_59092.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_20600.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_30764.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_34876.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_37427.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_38266.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_45283.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_46990.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_47123.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_47900.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_48050.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_48062.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_48076.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_50718.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_50972.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_51372.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_51830.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_53049.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_53505.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_54021.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_54565.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_54570.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_57666.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_57890.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_58072.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_58634.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_58643.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_59080.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_59202.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_59346.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_60379.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_60385.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_165_61098.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_17045_31154.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_17045_35648.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_17045_48914.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_17045_51975.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_17045_52435.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_17045_55790.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_17045_58958.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_17045_61146.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20191.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20562.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20606.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_20607.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30003.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30402.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30726.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_30924.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31457.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31460.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31600.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31620.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31640.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31782.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31797.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31829.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_31856.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34690.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34691.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_34694.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_35712.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37497.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_37539.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48070.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48219.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48824.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_48902.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_52867.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_53534.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_54570.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_58727.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60159.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_19905_60661.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_30037.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_34734.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_35365.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_35787.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_36793.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_37845.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_38328.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_39374.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_43936.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_44059.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_44405.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_44424.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_45166.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_46158.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_46425.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_47187.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_48435.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_48817.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_48849.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_48957.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_48965.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_49519.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_49921.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_50392.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_50972.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_52405.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_52442.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_53169.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_54640.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_57207.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_58537.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_58920.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_259_60358.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_25_16077.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_25_34943.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_25_36391.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_25_36574.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_25_52906.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_25_54642.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_16385.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_20333.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_20774.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_35825.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_37637.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_47741.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_48567.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_48841.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_49589.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_50564.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_51201.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_53150.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_55747.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_43_58276.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_20813.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_2331.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_2391.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_30374.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_30512.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_30796.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_31058.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_31450.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_36609.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_36636.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_38266.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_43800.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_47621.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_49433.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_49550.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_49865.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_51005.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_52373.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_53878.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_54554.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_57508.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_57618.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_59484.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_51_6563.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_61_16845.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_61_37106.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_61_37272.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_61_47947.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_61_50754.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_61_55800.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_61_57380.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_65_35328.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_65_36137.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_65_38826.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_65_44596.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_65_51275.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_65_55671.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_20155.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_30616.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_30653.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_30988.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_31339.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_31527.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_31631.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_36047.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_36568.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_36636.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_37020.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_38128.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_43952.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_45210.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_47889.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_51064.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_51800.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_5330.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_57508.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_58470.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_72_60894.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_20730.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_20753.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_30097.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_30663.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_35365.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_35375.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_35918.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_36010.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_36780.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_36793.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_37845.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_39110.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_39546.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_43936.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_44405.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_44424.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_44683.txt
71: 
71: fopen testChEMBL_Txt(): No such file or directory
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_45166.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_46648.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_46986.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_47070.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_47187.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_48435.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_48817.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_49138.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_49460.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_49519.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_49532.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_49829.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_50608.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_54640.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_87_61082.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_90_15727.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_90_20155.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_90_30407.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_90_3525.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_93_12377.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_93_1308.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_93_34759.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_93_35447.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_93_42214.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_93_45877.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_93_47082.txt
71: 
71: testChEMBL_Txt() chembl_II_sets/Target_no_93_57082.txt
71: 
71: testFileSDF_RandomSet(): benchmark/chembl13-10000-random-pairs.sdf
71: ERROR: RDKit could not load input file
71: 
71: testFileSDF_RandomSet(): benchmark/chembl13_pairs.smi
71: ERROR: RDKit could not load input file
71: 
71: testFileSDF_RandomSet(): benchmark/chembl13_knearest_2.smi
71: ERROR: RDKit could not load input file
71: 
71: testFileSDF_RandomSet(): benchmark/chembl13_knearest_10.smi
71: ERROR: RDKit could not load input file
71: 
71: testFileSDF_RandomSet(): benchmark/chembl13_knearest_100.smi
71: ERROR: RDKit could not load input file
71: 
71: testFileSDF_RandomSet(): benchmark/chembl13_threshold_80.smi
71: ERROR: RDKit could not load input file
71: 
71: testFileSDF_RandomSet(): benchmark/chembl13_threshold_90.smi
71: ERROR: RDKit could not load input file
71/91 Test #71: FMCStest .........................   Passed    0.04 sec
test 72
      Start 72: testMolHash
72: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/testMolHash
72: Test timeout computed to be: 9.99988e+06
72: Hash size = 32 bits.
72: [11:35:00] *******************************************************
72: [11:35:00] -------------------------------------
72: [11:35:00] Testing MolHash test1 DEFAULT ARGUMENTS
72: Hash size = 32 bits.
72: 3812942398 = PuJE4w
72: 3812942398 = PuJE4w
72: 3812942398 = PuJE4w
72: 3812942398 = PuJE4w
72: 
72: 338198123 = a34oFA
72: 338198123 = a34oFA
72: 338198123 = a34oFA
72: 338198123 = a34oFA
72: 
72: 402815520 = IHoCGA
72: 402815520 = IHoCGA
72: 402815520 = IHoCGA
72: 402815520 = IHoCGA
72: 
72: 1223038541 = TRbmSA
72: 1223038541 = TRbmSA
72: 1223038541 = TRbmSA
72: 1223038541 = TRbmSA
72: 
72: 2928101980 = XEqHrg
72: 2928101980 = XEqHrg
72: 2928101980 = XEqHrg
72: 2928101980 = XEqHrg
72: 
72: 2107878959 = L66jfQ
72: 2107878959 = L66jfQ
72: 2107878959 = L66jfQ
72: 2107878959 = L66jfQ
72: 
72: 1627884062 = HooHYQ
72: 1627884062 = HooHYQ
72: 1627884062 = HooHYQ
72: 1627884062 = HooHYQ
72: 
72: 4258023147 = 60bM/Q
72: 4258023147 = 60bM/Q
72: 4258023147 = 60bM/Q
72: 4258023147 = 60bM/Q
72: 
72: 2705547614 = XmFDoQ
72: 2705547614 = XmFDoQ
72: 2705547614 = XmFDoQ
72: 2705547614 = XmFDoQ
72: 
72: 140724322 = YkhjCA
72: 140724322 = YkhjCA
72: 140724322 = YkhjCA
72: 140724322 = YkhjCA
72: 
72: 3721159581 = nWPM3Q
72: 3721159581 = nWPM3Q
72: 3721159581 = nWPM3Q
72: 3721159581 = nWPM3Q
72: 
72: 3248152566 = 9t+awQ
72: 3248152566 = 9t+awQ
72: 3248152566 = 9t+awQ
72: 3248152566 = 9t+awQ
72: 
72: 1937191806 = fjN3cw
72: 1937191806 = fjN3cw
72: 1937191806 = fjN3cw
72: 1937191806 = fjN3cw
72: 
72: 3096446839 = dweQuA
72: 3096446839 = dweQuA
72: 3096446839 = dweQuA
72: 3096446839 = dweQuA
72: 
72: 2679006896 = sGaunw
72: 2679006896 = sGaunw
72: 2679006896 = sGaunw
72: 2679006896 = sGaunw
72: 
72: 1803158519 = 9wN6aw
72: 1803158519 = 9wN6aw
72: 1803158519 = 9wN6aw
72: 1803158519 = 9wN6aw
72: 
72: [11:35:00] 	done
72: [11:35:00] *******************************************************
72: [11:35:00] -------------------------------------
72: [11:35:00] Testing MolHash test2 CHIRALITY == ATOM
72: Hash size = 32 bits.
72: 1803875862 = FvaEaw | C[C@H](F)Cl
72: 1803875862 = FvaEaw | C[C@@H](F)Cl
72: 1803875862 = FvaEaw | CC(F)Cl
72: 1803875862 = FvaEaw | [13CH3]C(F)Cl
72: 1803875862 = FvaEaw | C[C@H](Cl)F
72: 1803875862 = FvaEaw | C[C@@H](Cl)F
72: [11:35:00] 	done
72: [11:35:00] *******************************************************
72: [11:35:00] -------------------------------------
72: [11:35:00] Testing MolHash test21 CHIRALITY == BOND
72: Hash size = 32 bits.
72: 2682339084 = DD/hnw | C/C=C/C
72: 2682339084 = DD/hnw | CC=CC
72: 2682339084 = DD/hnw | C/C=C\C
72: [11:35:00] 	done
72: [11:35:00] *******************************************************
72: [11:35:00] -------------------------------------
72: [11:35:00] Testing MolHash test3 CHIRALITY DIFF
72: 396390390 = 9m+gFw  C[C@H](F)Cl
72: 165703670 = 9m/gCQ  C[C@@H](F)Cl
72: 627077110 = 9m9gJQ  CC(F)Cl
72: 1767927798 = 9m9gaQ  [13CH3]C(F)Cl
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: 487785244 = HAMTHQ  C[C@H]1CC[C@H](C)CC1
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: 1886585628 = HANzcA  C[C@H]1CC[C@@H](C)CC1
72: 3383952156 = HAOzyQ  CC1CCC(C)CC1
72: [11:35:00] 	done
72: [11:35:00] *******************************************************
72: [11:35:00] -------------------------------------
72: [11:35:00] Testing MolHash test3a CHIRALITY EQUAL
72: 396390390 396390390
72: 165703670 165703670
72: 1432360172 1432360172
72: 1432360172 638829804
72: [11:35:00] 	done
72: [11:35:00] *******************************************************
72: [11:35:00] -------------------------------------
72: [11:35:00] Testing MolHash test4 STRING
72: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNTmug-IhGA6w-9m+gFw  C[C@H](F)Cl
72: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNSixQ-IhGA6w-9m/gCQ  C[C@@H](F)Cl
72: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNQqsA-IhGA6w-9m9gJQ  CC(F)Cl
72: 100-4-3-1Znckg-FvaEaw-0gYnCQ-KNQqjw-IhGA6w-9m9gaQ  [13CH3]C(F)Cl
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP6lAg-xKA4jw-HAMTHQ  C[C@H]1CC[C@H](C)CC1
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: [11:35:00] Warning: atom with more than 1 ring-stereo atoms found.
72: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP49vg-xKA4jw-HANzcA  C[C@H]1CC[C@@H](C)CC1
72: 100-8-8-mUuAmw-yMBwlA-uCxzDg-OP4NRw-xKA4jw-HAOzyQ  CC1CCC(C)CC1
72: [11:35:00] 	done
72: [11:35:00] *******************************************************
72: [11:35:00] -------------------------------------
72: [11:35:00] Testing MolHash test5 
72: [11:35:00] 	done
72/91 Test #72: testMolHash ......................   Passed    0.17 sec
test 73
      Start 73: pyMolHash
73: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolHash/Wrap/testMolHash.py"
73: Test timeout computed to be: 9.99988e+06
73: 
73: ----------------------------------------------------------------------
73: Ran 0 tests in 0.000s
73: 
73: OK
73/91 Test #73: pyMolHash ........................   Passed    0.22 sec
test 74
      Start 74: testSLNParse
74: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/testSLNParse
74: Test timeout computed to be: 9.99988e+06
74: [11:35:01] -------------------------------------
74: [11:35:01] Test1 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test2: bond orders 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test3: atom properties 
74: [11:35:01] SLN Parse Error: syntax error while parsing: CH4[I=13]
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test4: hydrogen handling 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test5: basic queries 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test6: ring queries 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test7: qualified queries 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test8: more complex atom properties 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test9: recursive SLNs 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test10: nested recursive SLNs 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test12: bond queries and properties 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test13: ring closure details 
74: [11:35:01] SLN Parser error: Atom ID 1 appears *after* its ring closure.
74: [11:35:01] SLN Parser error: Ring closure 1 does not have a corresponding opener.
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test14: error catching 
74: [11:35:01] SLN Parse Error: syntax error while parsing: CH2(C@1H2)CH2(CH2CH2C[1]H2)
74: [11:35:01] SLN Parse Error: syntax error while parsing: CH2(CH2[1])CH2(CH2CH2CH2@1)
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test15: CTAB properties 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test16: simple macro atoms 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test issue277: parse error with & 
74: [11:35:01] 	done
74: [11:35:01] -------------------------------------
74: [11:35:01] Test issue278: handling of 'not' and 'is' queries on Any
74: [11:35:01] Query property 'is' ignored on non-query atom
74: [11:35:01] Query property 'is' ignored on non-query atom
74: [11:35:01] 	done
74/91 Test #74: testSLNParse .....................   Passed    0.06 sec
test 75
      Start 75: pySLNParse
75: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/SLNParse/Wrap/testSLN.py"
75: Test timeout computed to be: 9.99988e+06
75: ..
75: ----------------------------------------------------------------------
75: Ran 2 tests in 0.035s
75: 
75: OK
75/91 Test #75: pySLNParse .......................   Passed    0.34 sec
test 76
      Start 76: pyGraphMolWrap
76: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/rough_test.py"
76: Test timeout computed to be: 9.99988e+06
76: ..............[11:35:01] SMARTS Parse Error: syntax error for input: fiib
76: .....[11:35:01] SMILES Parse Error: syntax error for input: fail
76: [11:35:01] ERROR: Smiles parse error on line 2
76: [11:35:01] ERROR: Cannot create molecule from : 'fail'
76: >>> This may result in an infinite loop.  It should finish almost instantly
76: <<< OK, it finished.
76: ............[11:35:01] Explicit valence for atom # 1 C, 5, is greater than permitted
76: ............[11:35:01] non-ring atom 0 marked aromatic
76: [11:35:01] non-ring atom 0 marked aromatic
76: [11:35:01] 
76: 
76: ****
76: Range Error
76: idx
76: Violation occurred on line 156 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ROMol.cpp
76: Failed Expression: 0 <= 12 <= 5
76: ****
76: 
76: [11:35:01] non-ring atom 0 marked aromatic
76: [11:35:01] non-ring atom 0 marked aromatic
76: [11:35:01] 
76: 
76: ****
76: Range Error
76: idx
76: Violation occurred on line 156 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/ROMol.cpp
76: Failed Expression: 0 <= 12 <= 5
76: ****
76: 
76: ...............[11:35:01] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count.
76: [11:35:01] WARNING: the onlyHeavy argument to mol.GetNumAtoms() has been deprecated. Please use the onlyExplicit argument instead or mol.GetNumHeavyAtoms() if you want the heavy atom count.
76: ..............[11:35:02] Can't kekulize mol 
76: 
76: [11:35:02] Explicit valence for atom # 1 C, 5, is greater than permitted
76: .............................
76: ----------------------------------------------------------------------
76: Ran 101 tests in 5.895s
76: 
76: OK
76/91 Test #76: pyGraphMolWrap ...................   Passed    6.19 sec
test 77
      Start 77: pyTestConformerWrap
77: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Wrap/testConformer.py"
77: Test timeout computed to be: 9.99988e+06
77: .....
77: ----------------------------------------------------------------------
77: Ran 5 tests in 0.028s
77: 
77: OK
77/91 Test #77: pyTestConformerWrap ..............   Passed    0.24 sec
test 78
      Start 78: testQuery
78: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/Query/testQuery
78: Test timeout computed to be: 9.99988e+06
78: Query
78: Query2
78: Equality
78: Greater
78: GreaterEqual
78: Less
78: LessEqual
78: Open Range
78: Closed Range
78: Float
78: With Tolerance
78: Set
78: And
78: Or
78: XOr
78: pointer and copy foo
78: Set2
78/91 Test #78: testQuery ........................   Passed    0.01 sec
test 79
      Start 79: testMatCalc
79: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/testMatCalc
79: Test timeout computed to be: 9.99988e+06
79: 1.68022e+08
79: 1.73149e+08
79: 1.05549e+08
79: 7.20603e+07
79: 1.41535e+08
79: 1.08592e+08
79: 1.11334e+08
79: 2.05553e+08
79: 1.54962e+08
79: 8.08231e+07
79: 5.61421e+07
79: 1.28874e+08
79: 1.59011e+08
79: 8.69902e+07
79: 1.31367e+08
79: 2.27389e+08
79: 1.60289e+08
79: 7.79813e+07
79: 1.61001e+08
79: 2.07599e+08
79: 2.24432e+08
79: 1.39725e+08
79: 2.42614e+08
79: 1.77578e+08
79: 1.05908e+08
79: 9.06742e+07
79: 1.8087e+08
79: 1.98182e+08
79: 2.03052e+08
79: 1.7673e+08
79: 9.32798e+07
79: 1.37969e+08
79: 1.83778e+08
79: 2.1228e+08
79: 5.06157e+07
79: 1.566e+08
79: 2.37142e+08
79: 1.49345e+08
79: 7.05819e+07
79: 1.71633e+08
79: 1.96817e+08
79: 2.18246e+08
79: 9.49496e+07
79: 2.25618e+08
79: 1.30219e+08
79/91 Test #79: testMatCalc ......................   Passed    0.01 sec
test 80
      Start 80: pyMatCalc
80: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/DataManip/MetricMatrixCalc/Wrap/testMatricCalc.py"
80: Test timeout computed to be: 9.99988e+06
80: .....
80: ----------------------------------------------------------------------
80: Ran 5 tests in 0.664s
80: 
80: OK
80/91 Test #80: pyMatCalc ........................   Passed    0.86 sec
test 81
      Start 81: pySimDivPickers
81: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/SimDivPickers/Wrap/testPickers.py"
81: Test timeout computed to be: 9.99988e+06
81: ......
81: ----------------------------------------------------------------------
81: Ran 6 tests in 2.626s
81: 
81: OK
81/91 Test #81: pySimDivPickers ..................   Passed    2.78 sec
test 82
      Start 82: pyRanker
82: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/Wrap/testRanker.py"
82: Test timeout computed to be: 9.99988e+06
82: ..[11:35:11] 
82: 
82: ****
82: Invariant Violation
82: Can't rank more bits than the ensemble size
82: Violation occurred on line 156 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ML/InfoTheory/InfoBitRanker.cpp
82: Failed Expression: num <= dp_maskBits->getNumOnBits()
82: ****
82: 
82: ...
82: ----------------------------------------------------------------------
82: Ran 5 tests in 0.018s
82: 
82: OK
82/91 Test #82: pyRanker .........................   Passed    0.10 sec
test 83
      Start 83: testChemicalFeatures
83: Test command: /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/testChemicalFeatures
83: Test timeout computed to be: 9.99988e+06
83: -----------------------------------------
83: Test1
83: Done
83/91 Test #83: testChemicalFeatures .............   Passed    0.00 sec
test 84
      Start 84: pyFeatures
84: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Code/ChemicalFeatures/Wrap/testFeatures.py"
84: Test timeout computed to be: 9.99988e+06
84: ..
84: ----------------------------------------------------------------------
84: Ran 2 tests in 0.001s
84: 
84: OK
84: Testing ChemicalFeatures Wrapper code:
84/91 Test #84: pyFeatures .......................   Passed    0.09 sec
test 85
      Start 85: pythonTestDbCLI
85: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/Projects/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2015_03_1/Projects"
85: Test timeout computed to be: 9.99988e+06
85: [11:35:11] INFO: Reading molecules and constructing molecular database.
85: [11:35:11] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:11] INFO:   Processing 10 molecules
85: [11:35:12] INFO: Generating fingerprints and descriptors:
85: [11:35:12] INFO: Finished.
85: [11:35:12] INFO: Reading molecules and constructing molecular database.
85: [11:35:12] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:12] INFO:   Processing 163 molecules
85: [11:35:12] INFO:   done 100
85: [11:35:12] INFO: Generating fingerprints and descriptors:
85: [11:35:14] INFO: Finished.
85: [11:35:15] INFO: Reading query molecules and generating fingerprints
85: [11:35:15] INFO: Finding Neighbors
85: [11:35:15] INFO: The search took 0.2 seconds
85: [11:35:15] INFO: Creating output
85: [11:35:15] INFO: Done!
85: [11:35:16] INFO: Reading query molecules and generating fingerprints
85: [11:35:16] INFO: Finding Neighbors
85: [11:35:16] INFO: The search took 0.2 seconds
85: [11:35:16] INFO: Creating output
85: [11:35:16] INFO: Done!
85: [11:35:16] INFO: Reading query molecules and generating fingerprints
85: [11:35:16] INFO: Finding Neighbors
85: [11:35:16] INFO: The search took 0.1 seconds
85: [11:35:16] INFO: Creating output
85: [11:35:16] INFO: Done!
85: [11:35:16] INFO: Doing property query
85: [11:35:16] INFO: Found 30 molecules matching the query
85: [11:35:16] INFO: Creating output
85: [11:35:16] INFO: Done!
85: [11:35:17] INFO: Doing property query
85: [11:35:17] INFO: Found 30 molecules matching the query
85: [11:35:17] INFO: Creating output
85: [11:35:17] INFO: Done!
85: [11:35:17] INFO: Doing substructure query
85: [11:35:17] INFO:    Fingerprint screenout rate: 112 of 163 (%68.71)
85: [11:35:17] INFO: Found 49 molecules matching the query
85: [11:35:17] INFO: Creating output
85: [11:35:17] INFO: Done!
85: [11:35:17] INFO: Doing substructure query
85: [11:35:17] INFO:    Fingerprint screenout rate: 112 of 163 (%68.71)
85: [11:35:17] INFO: Found 49 molecules matching the query
85: [11:35:17] INFO: Creating output
85: [11:35:17] INFO: Done!
85: [11:35:17] INFO: Doing substructure query
85: [11:35:17] INFO: Found 114 molecules matching the query
85: [11:35:17] INFO: Creating output
85: [11:35:17] INFO: Done!
85: [11:35:17] INFO: Doing substructure query
85: [11:35:17] INFO:    Fingerprint screenout rate: 23 of 30 (%76.67)
85: [11:35:17] INFO: Found 5 molecules matching the query
85: [11:35:17] INFO: Creating output
85: [11:35:17] INFO: Done!
85: [11:35:17] INFO: Doing substructure query
85: [11:35:17] INFO: Found 25 molecules matching the query
85: [11:35:17] INFO: Creating output
85: [11:35:17] INFO: Done!
85: [11:35:17] INFO: Reading query molecules and generating fingerprints
85: [11:35:19] INFO: Finding Neighbors
85: [11:35:19] INFO: The search took 0.3 seconds
85: [11:35:19] INFO: Creating output
85: [11:35:19] INFO: Done!
85: [11:35:20] INFO: Reading query molecules and generating fingerprints
85: [11:35:20] INFO: Finding Neighbors
85: [11:35:20] INFO: The search took 0.0 seconds
85: [11:35:20] INFO: Creating output
85: [11:35:20] INFO: Done!
85: [11:35:20] INFO: Reading molecules and constructing molecular database.
85: [11:35:20] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:20] INFO:   Processing 10 molecules
85: [11:35:20] INFO: Generating fingerprints and descriptors:
85: [11:35:20] INFO: Finished.
85: [11:35:20] INFO: Reading molecules and constructing molecular database.
85: [11:35:20] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:20] INFO:   Processing 10 molecules
85: [11:35:20] INFO: Generating fingerprints and descriptors:
85: [11:35:20] INFO: Finished.
85: [11:35:20] INFO: Reading molecules and constructing molecular database.
85: [11:35:20] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:20] INFO:   Processing 10 molecules
85: [11:35:20] INFO: Generating fingerprints and descriptors:
85: [11:35:20] INFO: Finished.
85: [11:35:20] INFO: Reading molecules and constructing molecular database.
85: [11:35:20] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:20] INFO: Generating fingerprints and descriptors:
85: [11:35:20] INFO: Finished.
85: [11:35:20] INFO: Reading molecules and constructing molecular database.
85: [11:35:20] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:20] INFO: Generating fingerprints and descriptors:
85: [11:35:20] INFO: Finished.
85: [11:35:20] INFO: Guessing that mol format is 'sdf'. Use --molFormat argument if this is wrong.
85: [11:35:20] INFO: Reading molecules and constructing molecular database.
85: [11:35:20] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:20] INFO:   Processing 163 molecules
85: [11:35:20] INFO:   done 100
85: [11:35:20] INFO: Generating fingerprints and descriptors:
85: [11:35:21] INFO: Finished.
85: [11:35:21] INFO: Reading query molecules and generating fingerprints
85: [11:35:21] INFO: Finding Neighbors
85: [11:35:21] INFO: The search took 0.1 seconds
85: [11:35:21] INFO: Creating output
85: [11:35:21] INFO: Done!
85: [11:35:21] INFO: Reading molecules and constructing molecular database.
85: [11:35:21] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:21] INFO:   Processing 10 molecules
85: [11:35:21] INFO: Generating fingerprints and descriptors:
85: [11:35:21] INFO: Finished.
85: [11:35:21] INFO: Reading molecules and constructing molecular database.
85: [11:35:21] INFO: Generating molecular database in file testData/bzr/Compounds.sqlt
85: [11:35:21] INFO:   Processing 10 molecules
85: [11:35:21] INFO: Generating fingerprints and descriptors:
85: [11:35:21] INFO: Finished.
85: ............
85: ----------------------------------------------------------------------
85: Ran 12 tests in 10.004s
85: 
85: OK
85/91 Test #85: pythonTestDbCLI ..................   Passed   10.05 sec
test 86
      Start 86: pythonTestDirML
86: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/ML/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/ML"
86: Test timeout computed to be: 9.99988e+06
86: .......
86: ----------------------------------------------------------------------
86: Ran 7 tests in 0.801s
86: 
86: OK
86: ............
86: ----------------------------------------------------------------------
86: Ran 12 tests in 0.222s
86: 
86: OK
86: .
86: ----------------------------------------------------------------------
86: Ran 1 test in 0.120s
86: 
86: OK
86: ...
86: ----------------------------------------------------------------------
86: Ran 3 tests in 0.002s
86: 
86: OK
86: .......
86: ----------------------------------------------------------------------
86: Ran 7 tests in 0.001s
86: 
86: OK
86: ...
86: ----------------------------------------------------------------------
86: Ran 3 tests in 0.470s
86: 
86: OK
86: ....
86: ----------------------------------------------------------------------
86: Ran 4 tests in 0.004s
86: 
86: OK
86: ......
86: ----------------------------------------------------------------------
86: Ran 6 tests in 0.006s
86: 
86: OK
86: ............
86: ----------------------------------------------------------------------
86: Ran 12 tests in 0.003s
86: 
86: OK
86: .....
86: ----------------------------------------------------------------------
86: Ran 5 tests in 0.014s
86: 
86: OK
86: ........
86: ----------------------------------------------------------------------
86: Ran 8 tests in 0.002s
86: 
86: OK
86: 
86: testing AddChild: 
86: testing GetName: 
86: testing GetChildren: 
86: testing PruneChild: 
86: testing tree equals: 
86: testing pickled tree equals: 
86: testing deepcopy on trees: 
86: ...
86: ----------------------------------------------------------------------
86: Ran 3 tests in 0.087s
86: 
86: OK
86: testing list membership: 
86: use selection with replacement: 
86: test the results of CrossValidation: 
86: ......
86: ----------------------------------------------------------------------
86: Ran 6 tests in 0.018s
86: 
86: OK
86: test that the CrossValidationDriver runs: 
86: testing basic tree growth: 
86: testing basic tree classification: 
86: testing multivalued tree growth: 
86: testing basic tree growth (python entropy code): 
86: testing tree classification (python entropy code): 
86: .
86: ----------------------------------------------------------------------
86: Ran 1 test in 0.006s
86: 
86: OK
86: .........
86: ----------------------------------------------------------------------
86: Ran 9 tests in 0.015s
86: 
86: OK
86: testing multivalued tree growth (python entropy code): 
86: testing tree comparisons: 
86: testing tree1: 
86: testing tree2: 
86: testing classification: 
86: testing unused variables: 
86: a more extensive test of the cmp stuff using hand-built trees: 
86: a more extensive test of the cmp stuff using pickled trees: 
86: try recycling descriptors: 
86: ....
86: ----------------------------------------------------------------------
86: Ran 4 tests in 0.088s
86: 
86: OK
86: ..
86: ----------------------------------------------------------------------
86: Ran 2 tests in 0.002s
86: 
86: OK
86: try random forests descriptors: 
86: testing calculation of a single descriptor: 
86: ...
86: ----------------------------------------------------------------------
86: Ran 3 tests in 0.014s
86: 
86: OK
86: ..
86: ----------------------------------------------------------------------
86: Ran 2 tests in 0.006s
86: 
86: OK
86: ..
86: ----------------------------------------------------------------------
86: Ran 2 tests in 0.452s
86: 
86: OK
86: ....
86: ----------------------------------------------------------------------
86: Ran 4 tests in 0.589s
86: 
86: OK
86: .....
86: ----------------------------------------------------------------------
86: Ran 5 tests in 0.317s
86: 
86: OK
86: ....
86: ----------------------------------------------------------------------
86: Ran 4 tests in 0.013s
86: 
86: OK
86: ...
86: ----------------------------------------------------------------------
86: Ran 3 tests in 0.383s
86: 
86: OK
86: testing calculation of multiple descriptors: 
86: testing backprop training on and: 
86: testing backprop training on a linear function: 
86: ..
86: ----------------------------------------------------------------------
86: Ran 2 tests in 0.001s
86: 
86: OK
86: testing backprop training on or: 
86: testing Burges empirical risk bound: 
86: testing Cherkassky empirical risk bound: 
86/91 Test #86: pythonTestDirML ..................   Passed    8.78 sec
test 87
      Start 87: pythonTestDirDataStructs
87: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/DataStructs/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/DataStructs"
87: Test timeout computed to be: 9.99988e+06
87/91 Test #87: pythonTestDirDataStructs .........   Passed    0.03 sec
test 88
      Start 88: pythonTestDirDbase
88: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/Dbase/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/Dbase"
88: Test timeout computed to be: 9.99988e+06
88/91 Test #88: pythonTestDirDbase ...............   Passed    0.02 sec
test 89
      Start 89: pythonTestDirSimDivFilters
89: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/SimDivFilters/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/SimDivFilters"
89: Test timeout computed to be: 9.99988e+06
89/91 Test #89: pythonTestDirSimDivFilters .......   Passed    0.02 sec
test 90
      Start 90: pythonTestDirVLib
90: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/VLib/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/VLib"
90: Test timeout computed to be: 9.99988e+06
90/91 Test #90: pythonTestDirVLib ................   Passed    0.02 sec
test 91
      Start 91: pythonTestDirChem
91: Test command: /usr/bin/python "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/Chem/test_list.py" "--testDir" "/builddir/build/BUILD/rdkit-Release_2015_03_1/rdkit/Chem"
91: Test timeout computed to be: 9.99988e+06
91: ....
91: ----------------------------------------------------------------------
91: Ran 4 tests in 0.105s
91: 
91: OK
91: ......
91: ----------------------------------------------------------------------
91: Ran 6 tests in 0.092s
91: 
91: OK
91: ....[11:35:31] 
91: 
91: ****
91: Pre-condition Violation
91: valence not defined for atoms not associated with molecules
91: Violation occurred on line 269 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/Atom.cpp
91: Failed Expression: dp_mol
91: ****
91: 
91: .
91: ----------------------------------------------------------------------
91: Ran 5 tests in 0.015s
91: 
91: OK
91: ....
91: ----------------------------------------------------------------------
91: Ran 4 tests in 0.018s
91: 
91: OK
91: ..
91: ----------------------------------------------------------------------
91: Ran 2 tests in 0.018s
91: 
91: OK
91: ......................
91: ----------------------------------------------------------------------
91: Ran 22 tests in 0.072s
91: 
91: OK
91: .......................
91: ----------------------------------------------------------------------
91: Ran 23 tests in 0.341s
91: 
91: OK
91: ..
91: ----------------------------------------------------------------------
91: Ran 2 tests in 0.154s
91: 
91: OK
91: 
91: testing first 200 mols from NCI: 
91: ..........................................
91: ----------------------------------------------------------------------
91: Ran 42 tests in 0.409s
91: 
91: OK
91: ....
91: ----------------------------------------------------------------------
91: Ran 4 tests in 0.021s
91: 
91: OK
91: .
91: ----------------------------------------------------------------------
91: Ran 1 test in 0.011s
91: 
91: OK
91: testing a problem with the acceptor definition: 
91: ......
91: ----------------------------------------------------------------------
91: Ran 6 tests in 0.035s
91: 
91: OK
91: ..[11:35:35] SMILES Parse Error: syntax error for input: fail
91: [11:35:35] ERROR: Smiles parse error on line 2
91: [11:35:35] ERROR: Cannot create molecule from : 'fail'
91: .
91: ----------------------------------------------------------------------
91: Ran 3 tests in 0.062s
91: 
91: OK
91: ..
91: ----------------------------------------------------------------------
91: Ran 2 tests in 0.105s
91: 
91: OK
91: ..[11:35:36] WARNING: More than one matching pattern found - picking one
91: [11:35:36] WARNING: More than one matching pattern found - picking one
91: .
91: ----------------------------------------------------------------------
91: Ran 3 tests in 0.049s
91: 
91: OK
91: ........
91: ----------------------------------------------------------------------
91: Ran 8 tests in 0.092s
91: 
91: OK
91: ..................
91: ----------------------------------------------------------------------
91: Ran 18 tests in 0.051s
91: 
91: OK
91: .............
91: ----------------------------------------------------------------------
91: Ran 13 tests in 0.994s
91: 
91: OK
91: ....
91: ----------------------------------------------------------------------
91: Ran 4 tests in 2.945s
91: 
91: OK
91: [11:35:41] WARNING: More than one matching pattern found - picking one
91: [11:35:41] WARNING: More than one matching pattern found - picking one
91: [11:35:41] WARNING: Omitted undefined stereo
91: [11:35:41] WARNING: Proton(s) added/removed
91: first set of test cases: InChI write Summary: 1164 identical, 0 suffix variance, 17 reasonable
91: ..[11:35:43] ERROR: *Conversion failed on component(s) 1(C23H33O6)
91: [11:35:53] Explicit valence for atom # 7 N, 5, is greater than permitted
91: [11:35:53] ERROR: Sanitization error: Explicit valence for atom # 7 N, 5, is greater than permitted
91: ...
91: ----------------------------------------------------------------------
91: Ran 5 tests in 13.853s
91: 
91: OK
91: InChI Read Summary: 550 identical, 0  variance, 631 reasonable variance
91: ....
91: ----------------------------------------------------------------------
91: Ran 4 tests in 2.903s
91: 
91: OK
91: ......
91: ----------------------------------------------------------------------
91: Ran 6 tests in 0.712s
91: 
91: OK
91: pandas installation not found, skipping tests
91: ...
91: ----------------------------------------------------------------------
91: Ran 3 tests in 0.975s
91: 
91: OK
91: ..
91: ----------------------------------------------------------------------
91: Ran 2 tests in 0.102s
91: 
91: OK
91: .....
91: ----------------------------------------------------------------------
91: Ran 5 tests in 0.014s
91: 
91: OK
91: .
91: ----------------------------------------------------------------------
91: Ran 1 test in 0.023s
91: 
91: OK
91: ..
91: ----------------------------------------------------------------------
91: Ran 2 tests in 0.028s
91: 
91: OK
91: .
91: ----------------------------------------------------------------------
91: Ran 1 test in 0.255s
91: 
91: OK
91: ........
91: ----------------------------------------------------------------------
91: Ran 8 tests in 0.003s
91: 
91: OK
91: .
91: ----------------------------------------------------------------------
91: Ran 1 test in 0.001s
91: 
91: OK
91: ..
91: ----------------------------------------------------------------------
91: Ran 2 tests in 0.005s
91: 
91: OK
91: ......
91: ----------------------------------------------------------------------
91: Ran 6 tests in 0.027s
91: 
91: OK
91: ...
91: ----------------------------------------------------------------------
91: Ran 3 tests in 0.031s
91: 
91: OK
91: ...
91: ----------------------------------------------------------------------
91: Ran 3 tests in 4.406s
91: 
91: OK
91: ..........
91: ----------------------------------------------------------------------
91: Ran 10 tests in 0.104s
91: 
91: OK
91: .....
91: ----------------------------------------------------------------------
91: Ran 5 tests in 0.001s
91: 
91: OK
91: ....
91: ----------------------------------------------------------------------
91: Ran 4 tests in 0.168s
91: 
91: OK
91: .....
91: ----------------------------------------------------------------------
91: Ran 5 tests in 6.044s
91: 
91: OK
91: mol_197
91: 218.80,35.75,110.33,11.58,109.66,11.09,90.35,2.95,0.00
91: mol_223
91: 259.19,6.27,134.13,1.12,134.06,1.12,85.74,0.61,0.00
91: mol_269
91: 204.51,7.89,103.89,1.20,102.66,1.20,88.07,1.21,6.00
91: ...[11:36:18] 
91: 
91: ****
91: Pre-condition Violation
91: molecule has no conformers
91: Violation occurred on line 37 in file /builddir/build/BUILD/rdkit-Release_2015_03_1/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp
91: Failed Expression: dp_mol->getNumConformers()
91: ****
91: 
91: .
91: ----------------------------------------------------------------------
91: Ran 4 tests in 0.043s
91: 
91: OK
91: .
91: ----------------------------------------------------------------------
91: Ran 1 test in 0.214s
91: 
91: OK
91: ..[11:36:19] SMILES Parse Error: syntax error for input: fail
91: [11:36:19] ERROR: Smiles parse error on line 2
91: [11:36:19] ERROR: Cannot create molecule from : 'fail'
91: [11:36:19] SMILES Parse Error: syntax error for input: fail
91: [11:36:19] ERROR: Smiles parse error on line 2
91: [11:36:19] ERROR: Cannot create molecule from : 'fail'
91: .
91: ----------------------------------------------------------------------
91: Ran 3 tests in 0.025s
91: 
91: OK
91: ..
91: ----------------------------------------------------------------------
91: Ran 2 tests in 0.793s
91: 
91: OK
91: ............
91: ----------------------------------------------------------------------
91: Ran 12 tests in 0.126s
91: 
91: OK
91: [11:36:21] INFO: Skipping agg test
91: [11:36:21] INFO: Skipping sping test
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:22] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: [11:36:23] non-ring atom 1 marked aromatic
91: .
91: ----------------------------------------------------------------------
91: Ran 1 test in 0.126s
91: 
91: OK
91/91 Test #91: pythonTestDirChem ................   Passed   52.79 sec
100% tests passed, 0 tests failed out of 91
Total Test time (real) = 160.23 sec
+ exit 0
Processing files: rdkit-2015.03.1-2.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.6QeImN
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2015_03_1
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/doc/rdkit-2015.03.1
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/doc/rdkit-2015.03.1
+ cp -pr license.txt /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/doc/rdkit-2015.03.1
+ cp -pr ReleaseNotes.txt /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/doc/rdkit-2015.03.1
+ exit 0
Provides: libAlignment.so.1()(64bit) libCatalogs.so.1()(64bit) libChemReactions.so.1()(64bit) libChemTransforms.so.1()(64bit) libChemicalFeatures.so.1()(64bit) libDataStructs.so.1()(64bit) libDepictor.so.1()(64bit) libDescriptors.so.1()(64bit) libDistGeomHelpers.so.1()(64bit) libDistGeometry.so.1()(64bit) libEigenSolvers.so.1()(64bit) libFMCS.so.1()(64bit) libFileParsers.so.1()(64bit) libFingerprints.so.1()(64bit) libForceField.so.1()(64bit) libForceFieldHelpers.so.1()(64bit) libFragCatalog.so.1()(64bit) libGraphMol.so.1()(64bit) libInfoTheory.so.1()(64bit) libMolAlign.so.1()(64bit) libMolCatalog.so.1()(64bit) libMolChemicalFeatures.so.1()(64bit) libMolDraw2D.so.1()(64bit) libMolHash.so.1()(64bit) libMolTransforms.so.1()(64bit) libOptimizer.so.1()(64bit) libPartialCharges.so.1()(64bit) libRDBoost.so.1()(64bit) libRDGeneral.so.1()(64bit) libRDGeometryLib.so.1()(64bit) libRDInchiLib.so.1()(64bit) libSLNParse.so.1()(64bit) libShapeHelpers.so.1()(64bit) libSimDivPickers.so.1()(64bit) libSmilesParse.so.1()(64bit) libSubgraphs.so.1()(64bit) libSubstructMatch.so.1()(64bit) libhc.so.1()(64bit) rdkit = 2015.03.1-2.el7.centos rdkit(x86-64) = 2015.03.1-2.el7.centos
Requires(interp): /sbin/ldconfig /sbin/ldconfig
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires(post): /sbin/ldconfig
Requires(postun): /sbin/ldconfig
Requires: libAlignment.so.1()(64bit) libCatalogs.so.1()(64bit) libChemTransforms.so.1()(64bit) libDataStructs.so.1()(64bit) libDepictor.so.1()(64bit) libDescriptors.so.1()(64bit) libDistGeometry.so.1()(64bit) libEigenSolvers.so.1()(64bit) libFileParsers.so.1()(64bit) libFingerprints.so.1()(64bit) libForceField.so.1()(64bit) libForceFieldHelpers.so.1()(64bit) libGraphMol.so.1()(64bit) libMolTransforms.so.1()(64bit) libOptimizer.so.1()(64bit) libPartialCharges.so.1()(64bit) libRDGeneral.so.1()(64bit) libRDGeometryLib.so.1()(64bit) libSmilesParse.so.1()(64bit) libSubgraphs.so.1()(64bit) libSubstructMatch.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libboost_regex-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libhc.so.1()(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Processing files: rdkit-devel-2015.03.1-2.el7.centos.x86_64
Provides: rdkit-devel = 2015.03.1-2.el7.centos rdkit-devel(x86-64) = 2015.03.1-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libAlignment.so.1()(64bit) libCatalogs.so.1()(64bit) libChemReactions.so.1()(64bit) libChemTransforms.so.1()(64bit) libChemicalFeatures.so.1()(64bit) libDataStructs.so.1()(64bit) libDepictor.so.1()(64bit) libDescriptors.so.1()(64bit) libDistGeomHelpers.so.1()(64bit) libDistGeometry.so.1()(64bit) libEigenSolvers.so.1()(64bit) libFMCS.so.1()(64bit) libFileParsers.so.1()(64bit) libFingerprints.so.1()(64bit) libForceField.so.1()(64bit) libForceFieldHelpers.so.1()(64bit) libFragCatalog.so.1()(64bit) libGraphMol.so.1()(64bit) libInfoTheory.so.1()(64bit) libMolAlign.so.1()(64bit) libMolCatalog.so.1()(64bit) libMolChemicalFeatures.so.1()(64bit) libMolDraw2D.so.1()(64bit) libMolHash.so.1()(64bit) libMolTransforms.so.1()(64bit) libOptimizer.so.1()(64bit) libPartialCharges.so.1()(64bit) libRDBoost.so.1()(64bit) libRDGeneral.so.1()(64bit) libRDGeometryLib.so.1()(64bit) libRDInchiLib.so.1()(64bit) libSLNParse.so.1()(64bit) libShapeHelpers.so.1()(64bit) libSimDivPickers.so.1()(64bit) libSmilesParse.so.1()(64bit) libSubgraphs.so.1()(64bit) libSubstructMatch.so.1()(64bit) libhc.so.1()(64bit)
Processing files: rdkit-doc-2015.03.1-2.el7.centos.noarch
Provides: rdkit-doc = 2015.03.1-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: rdkit-extras-2015.03.1-2.el7.centos.noarch
Provides: rdkit-extras = 2015.03.1-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python
Processing files: python-rdkit-2015.03.1-2.el7.centos.x86_64
Provides: python-rdkit = 2015.03.1-2.el7.centos python-rdkit(x86-64) = 2015.03.1-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libAlignment.so.1()(64bit) libCatalogs.so.1()(64bit) libChemReactions.so.1()(64bit) libChemTransforms.so.1()(64bit) libChemicalFeatures.so.1()(64bit) libDataStructs.so.1()(64bit) libDepictor.so.1()(64bit) libDescriptors.so.1()(64bit) libDistGeomHelpers.so.1()(64bit) libDistGeometry.so.1()(64bit) libEigenSolvers.so.1()(64bit) libFMCS.so.1()(64bit) libFileParsers.so.1()(64bit) libFingerprints.so.1()(64bit) libForceField.so.1()(64bit) libForceFieldHelpers.so.1()(64bit) libFragCatalog.so.1()(64bit) libGraphMol.so.1()(64bit) libInfoTheory.so.1()(64bit) libMolAlign.so.1()(64bit) libMolCatalog.so.1()(64bit) libMolChemicalFeatures.so.1()(64bit) libMolDraw2D.so.1()(64bit) libMolHash.so.1()(64bit) libMolTransforms.so.1()(64bit) libOptimizer.so.1()(64bit) libPartialCharges.so.1()(64bit) libRDBoost.so.1()(64bit) libRDGeneral.so.1()(64bit) libRDGeometryLib.so.1()(64bit) libRDInchiLib.so.1()(64bit) libSLNParse.so.1()(64bit) libShapeHelpers.so.1()(64bit) libSimDivPickers.so.1()(64bit) libSmilesParse.so.1()(64bit) libSubgraphs.so.1()(64bit) libSubstructMatch.so.1()(64bit) libboost_python-mt.so.1.53.0()(64bit) libboost_regex-mt.so.1.53.0()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libhc.so.1()(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libpython2.7.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 2.7 rtld(GNU_HASH)
Processing files: rdkit-postgresql-2015.03.1-2.el7.centos.x86_64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.ZRBZQ4
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2015_03_1
+ DOCDIR=/builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2015.03.1
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2015.03.1
+ cp -pr Code/PgSQL/rdkit/README /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64/usr/share/doc/rdkit-postgresql-2015.03.1
+ exit 0
Provides: rdkit-postgresql = 2015.03.1-2.el7.centos rdkit-postgresql(x86-64) = 2015.03.1-2.el7.centos
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libChemReactions.so.1()(64bit) libChemTransforms.so.1()(64bit) libDataStructs.so.1()(64bit) libDepictor.so.1()(64bit) libDescriptors.so.1()(64bit) libFMCS.so.1()(64bit) libFileParsers.so.1()(64bit) libFingerprints.so.1()(64bit) libGraphMol.so.1()(64bit) libMolHash.so.1()(64bit) libRDGeneral.so.1()(64bit) libSmilesParse.so.1()(64bit) libSubstructMatch.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.2.5)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) rtld(GNU_HASH)
Processing files: rdkit-debuginfo-2015.03.1-2.el7.centos.x86_64
Provides: rdkit-debuginfo = 2015.03.1-2.el7.centos rdkit-debuginfo(x86-64) = 2015.03.1-2.el7.centos
Requires(rpmlib): rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 rpmlib(CompressedFileNames) <= 3.0.4-1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64
Wrote: /builddir/build/RPMS/rdkit-2015.03.1-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-devel-2015.03.1-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-doc-2015.03.1-2.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/rdkit-extras-2015.03.1-2.el7.centos.noarch.rpm
Wrote: /builddir/build/RPMS/python-rdkit-2015.03.1-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-postgresql-2015.03.1-2.el7.centos.x86_64.rpm
Wrote: /builddir/build/RPMS/rdkit-debuginfo-2015.03.1-2.el7.centos.x86_64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.X5TPBp
+ umask 022
+ cd /builddir/build/BUILD
+ cd rdkit-Release_2015_03_1
+ /usr/bin/rm -rf /builddir/build/BUILDROOT/rdkit-2015.03.1-2.el7.centos.x86_64
+ exit 0
Child return code was: 0
LEAVE do -->