Warning: Permanently added '150.239.113.188' (ED25519) to the list of known hosts.

You can reproduce this build on your computer by running:

  sudo dnf install copr-rpmbuild
  /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8411803-fedora-rawhide-s390x --chroot fedora-rawhide-s390x


Version: 1.2
PID: 13641
Logging PID: 13642
Task:
{'allow_user_ssh': False,
 'appstream': False,
 'background': True,
 'build_id': 8411803,
 'buildroot_pkgs': [],
 'chroot': 'fedora-rawhide-s390x',
 'enable_net': False,
 'fedora_review': False,
 'git_hash': 'c8d2e07e7b8607c6fddb42cae0ecf1b6b2be4207',
 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/autodocksuite',
 'isolation': 'default',
 'memory_reqs': 2048,
 'package_name': 'autodocksuite',
 'package_version': '4.2.6-23',
 'project_dirname': 'gcc-15-smoketest-3',
 'project_name': 'gcc-15-smoketest-3',
 'project_owner': 'dmalcolm',
 'repo_priority': None,
 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/dmalcolm/gcc-15-smoketest-3/fedora-rawhide-s390x/',
            'id': 'copr_base',
            'name': 'Copr repository',
            'priority': None},
           {'baseurl': 'https://fedorapeople.org/~dmalcolm/gcc/gcc-15-mass-prebuild/$basearch',
            'id': 'https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch',
            'name': 'Additional repo https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch'}],
 'sandbox': 'dmalcolm/gcc-15-smoketest-3--dmalcolm',
 'source_json': {},
 'source_type': None,
 'ssh_public_keys': None,
 'storage': 0,
 'submitter': 'dmalcolm',
 'tags': [],
 'task_id': '8411803-fedora-rawhide-s390x',
 'timeout': 115200,
 'uses_devel_repo': False,
 'with_opts': [],
 'without_opts': []}

Running: git clone https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/autodocksuite /var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite --depth 500 --no-single-branch --recursive

cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/dmalcolm/gcc-15-smoketest-3/autodocksuite', '/var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite', '--depth', '500', '--no-single-branch', '--recursive']
cwd: .
rc: 0
stdout: 
stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite'...

Running: git checkout c8d2e07e7b8607c6fddb42cae0ecf1b6b2be4207 --

cmd: ['git', 'checkout', 'c8d2e07e7b8607c6fddb42cae0ecf1b6b2be4207', '--']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite
rc: 0
stdout: 
stderr: Note: switching to 'c8d2e07e7b8607c6fddb42cae0ecf1b6b2be4207'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at c8d2e07 automatic import of autodocksuite

Running: dist-git-client sources

cmd: ['dist-git-client', 'sources']
cwd: /var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite
rc: 0
stdout: 
stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD
INFO: Reading stdout from command: git rev-parse HEAD
INFO: Reading sources specification file: sources
INFO: Downloading autodocksuite-4.2.6-src.tar.gz
INFO: Reading stdout from command: curl --help all
INFO: Calling: curl -H Pragma: -o autodocksuite-4.2.6-src.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/dmalcolm/gcc-15-smoketest-3/autodocksuite/autodocksuite-4.2.6-src.tar.gz/md5/f4942c8e8c47aca7f3a2ae8794259067/autodocksuite-4.2.6-src.tar.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 33.7M  100 33.7M    0     0  26.3M      0  0:00:01  0:00:01 --:--:-- 26.3M
INFO: Reading stdout from command: md5sum autodocksuite-4.2.6-src.tar.gz

/usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated
Running (timeout=115200): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734635205.561201 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
INFO: mock.py version 5.9 starting (python version = 3.13.0, NVR = mock-5.9-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite/autodocksuite.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1734635205.561201 -r /var/lib/copr-rpmbuild/results/configs/child.cfg
Start(bootstrap): init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish(bootstrap): init plugins
Start: init plugins
INFO: tmpfs initialized
INFO: selinux enabled
INFO: chroot_scan: initialized
INFO: compress_logs: initialized
Finish: init plugins
INFO: Signal handler active
Start: run
INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite/autodocksuite.spec)  Config(fedora-rawhide-s390x)
Start: clean chroot
Finish: clean chroot
Mock Version: 5.9
INFO: Mock Version: 5.9
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1734635205.561201/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
INFO: Guessed host environment type: unknown
INFO: Using bootstrap image: registry.fedoraproject.org/fedora:rawhide
INFO: Pulling image: registry.fedoraproject.org/fedora:rawhide
INFO: Copy content of container registry.fedoraproject.org/fedora:rawhide to /var/lib/mock/fedora-rawhide-s390x-bootstrap-1734635205.561201/root
INFO: Checking that registry.fedoraproject.org/fedora:rawhide image matches host's architecture
INFO: mounting registry.fedoraproject.org/fedora:rawhide with podman image mount
INFO: image registry.fedoraproject.org/fedora:rawhide as /var/lib/containers/storage/overlay/da2b15e6e73ce3eeddfa993cdfe79e2af36b16377c7a73c18685440fec3badb1/merged
INFO: umounting image registry.fedoraproject.org/fedora:rawhide (/var/lib/containers/storage/overlay/da2b15e6e73ce3eeddfa993cdfe79e2af36b16377c7a73c18685440fec3badb1/merged) with podman image umount
INFO: Package manager dnf5 detected and used (fallback)
INFO: Not updating bootstrap chroot, bootstrap_image_ready=True
Start(bootstrap): creating root cache
Finish(bootstrap): creating root cache
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1734635205.561201/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Package manager dnf5 detected and used (direct choice)
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.s390x
  rpm-sequoia-1.7.0-3.fc42.s390x
  dnf5-5.2.8.1-2.fc42.s390x
  dnf5-plugins-5.2.8.1-2.fc42.s390x
Start: installing minimal buildroot with dnf5
Updating and loading repositories:
 fedora                                 100% | 116.2 KiB/s |   3.0 KiB |  00m00s
 Copr repository                        100% |  49.4 KiB/s |   1.5 KiB |  00m00s
 Additional repo https_fedorapeople_org 100% |  29.3 KiB/s |   1.5 KiB |  00m00s
 Copr repository                        100% |   8.6 MiB/s | 626.8 KiB |  00m00s
Repositories loaded.
Package                            Arch   Version                    Repository                                                             Size
Installing group/module packages:
 bash                              s390x  5.2.37-1.fc42              fedora                                                              8.4 MiB
 bzip2                             s390x  1.0.8-19.fc41              fedora                                                             99.2 KiB
 coreutils                         s390x  9.5-11.fc42                fedora                                                              5.7 MiB
 cpio                              s390x  2.15-2.fc41                fedora                                                              1.1 MiB
 diffutils                         s390x  3.10-8.fc41                fedora                                                              1.6 MiB
 fedora-release-common             noarch 42-0.11                    fedora                                                             19.8 KiB
 findutils                         s390x  1:4.10.0-4.fc41            fedora                                                              1.9 MiB
 gawk                              s390x  5.3.0-4.fc41               fedora                                                              1.8 MiB
 glibc-minimal-langpack            s390x  2.40.9000-24.fc42          fedora                                                              0.0   B
 grep                              s390x  3.11-9.fc41                fedora                                                              1.0 MiB
 gzip                              s390x  1.13-2.fc41                fedora                                                            400.8 KiB
 info                              s390x  7.1.1-2.fc42               fedora                                                            409.1 KiB
 patch                             s390x  2.7.6-25.fc41              fedora                                                            298.3 KiB
 redhat-rpm-config                 noarch 300-1.no_annobin.0.fc42    copr_base                                                         186.6 KiB
 rpm-build                         s390x  4.20.0-1.fc42              fedora                                                            200.4 KiB
 sed                               s390x  4.9-3.fc41                 fedora                                                            873.2 KiB
 shadow-utils                      s390x  2:4.17.0~rc1-1.fc42        fedora                                                              4.0 MiB
 tar                               s390x  2:1.35-4.fc41              fedora                                                              3.0 MiB
 unzip                             s390x  6.0-65.fc42                fedora                                                              2.2 MiB
 util-linux                        s390x  2.40.2-8.fc42              fedora                                                              3.7 MiB
 which                             s390x  2.21-42.fc41               fedora                                                             83.9 KiB
 xz                                s390x  1:5.6.3-2.fc42             fedora                                                              1.2 MiB
Installing dependencies:
 add-determinism                   s390x  0.4.3-1.fc42               fedora                                                              3.3 MiB
 alternatives                      s390x  1.31-1.fc42                fedora                                                             60.6 KiB
 ansible-srpm-macros               noarch 1-16.fc41                  fedora                                                             35.7 KiB
 audit-libs                        s390x  4.0.2-1.fc42               copr_base                                                         342.9 KiB
 authselect                        s390x  1.5.0-8.fc42               copr_base                                                         151.8 KiB
 authselect-libs                   s390x  1.5.0-8.fc42               copr_base                                                         817.4 KiB
 basesystem                        noarch 11-21.fc41                 fedora                                                              0.0   B
 binutils                          s390x  2.43.50-9.fc42             fedora                                                             27.4 MiB
 build-reproducibility-srpm-macros noarch 0.4.3-1.fc42               fedora                                                            735.0   B
 bzip2-libs                        s390x  1.0.8-19.fc41              fedora                                                             88.5 KiB
 ca-certificates                   noarch 2024.2.69_v8.0.401-3.fc42  fedora                                                              2.6 MiB
 coreutils-common                  s390x  9.5-11.fc42                fedora                                                             11.2 MiB
 cracklib                          s390x  2.9.11-6.fc41              fedora                                                            250.0 KiB
 crypto-policies                   noarch 20241128-1.gitbb7b0b0.fc42 fedora                                                            137.3 KiB
 curl                              s390x  8.11.1-2.fc42              fedora                                                            475.8 KiB
 cyrus-sasl-lib                    s390x  2.1.28-27.fc41             fedora                                                              2.4 MiB
 debugedit                         s390x  5.1-2.fc42                 fedora                                                            195.8 KiB
 dwz                               s390x  0.15-8.fc42                fedora                                                            318.6 KiB
 ed                                s390x  1.20.2-2.fc41              fedora                                                            150.6 KiB
 efi-srpm-macros                   noarch 5-13.fc42                  fedora                                                             40.2 KiB
 elfutils                          s390x  0.192-7.fc42               fedora                                                              2.9 MiB
 elfutils-debuginfod-client        s390x  0.192-7.fc42               fedora                                                             73.0 KiB
 elfutils-default-yama-scope       noarch 0.192-7.fc42               fedora                                                              1.8 KiB
 elfutils-libelf                   s390x  0.192-7.fc42               fedora                                                              1.2 MiB
 elfutils-libs                     s390x  0.192-7.fc42               fedora                                                            746.5 KiB
 fedora-gpg-keys                   noarch 42-0.3                     fedora                                                            126.4 KiB
 fedora-release                    noarch 42-0.11                    fedora                                                              0.0   B
 fedora-release-identity-basic     noarch 42-0.11                    fedora                                                            719.0   B
 fedora-repos                      noarch 42-0.3                     fedora                                                              4.9 KiB
 fedora-repos-rawhide              noarch 42-0.3                     fedora                                                              2.2 KiB
 file                              s390x  5.45-8.fc42                fedora                                                             99.3 KiB
 file-libs                         s390x  5.45-8.fc42                fedora                                                              9.9 MiB
 filesystem                        s390x  3.18-29.fc42               fedora                                                            106.0   B
 filesystem-srpm-macros            noarch 3.18-29.fc42               fedora                                                             36.1 KiB
 fonts-srpm-macros                 noarch 1:2.0.5-17.fc41            fedora                                                             55.8 KiB
 forge-srpm-macros                 noarch 0.4.0-1.fc42               fedora                                                             38.9 KiB
 fpc-srpm-macros                   noarch 1.3-13.fc41                fedora                                                            144.0   B
 gdb-minimal                       s390x  15.2-4.fc42                fedora                                                             14.7 MiB
 gdbm                              s390x  1:1.23-7.fc41              fedora                                                            483.9 KiB
 gdbm-libs                         s390x  1:1.23-7.fc41              fedora                                                            133.4 KiB
 ghc-srpm-macros                   noarch 1.9.2-1.fc42               fedora                                                            779.0   B
 glibc                             s390x  2.40.9000-24.fc42          fedora                                                              5.1 MiB
 glibc-common                      s390x  2.40.9000-24.fc42          fedora                                                              1.1 MiB
 glibc-gconv-extra                 s390x  2.40.9000-24.fc42          fedora                                                              6.5 MiB
 gmp                               s390x  1:6.3.0-2.fc41             fedora                                                            770.0 KiB
 gnat-srpm-macros                  noarch 6-6.fc41                   fedora                                                              1.0 KiB
 go-srpm-macros                    noarch 3.6.0-5.fc42               fedora                                                             60.8 KiB
 jansson                           s390x  2.14-1.fc42                fedora                                                             92.9 KiB
 json-c                            s390x  0.18-1.fc42                fedora                                                             82.9 KiB
 kernel-srpm-macros                noarch 1.0-24.fc41                fedora                                                              1.9 KiB
 keyutils-libs                     s390x  1.6.3-4.fc41               fedora                                                             54.2 KiB
 krb5-libs                         s390x  1.21.3-3.fc42              fedora                                                              2.4 MiB
 libacl                            s390x  2.3.2-2.fc42               copr_base                                                          34.1 KiB
 libarchive                        s390x  3.7.7-1.fc42               fedora                                                              1.0 MiB
 libattr                           s390x  2.5.2-4.fc41               fedora                                                             28.3 KiB
 libblkid                          s390x  2.40.2-8.fc42              fedora                                                            286.4 KiB
 libbrotli                         s390x  1.1.0-5.fc41               fedora                                                            925.1 KiB
 libcap                            s390x  2.71-1.fc42                fedora                                                            211.8 KiB
 libcap-ng                         s390x  0.8.5-3.fc41               fedora                                                             76.7 KiB
 libcom_err                        s390x  1.47.1-6.fc42              fedora                                                             67.0 KiB
 libcurl                           s390x  8.11.1-2.fc42              fedora                                                            861.0 KiB
 libeconf                          s390x  0.7.5-1.fc42               fedora                                                             62.5 KiB
 libevent                          s390x  2.1.12-14.fc41             fedora                                                            938.8 KiB
 libfdisk                          s390x  2.40.2-8.fc42              fedora                                                            394.8 KiB
 libffi                            s390x  3.4.6-3.fc42               fedora                                                             65.9 KiB
 libgcc                            s390x  15.0.0-0.2.fc42            https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 166.7 KiB
 libgomp                           s390x  15.0.0-0.2.fc42            https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 529.0 KiB
 libidn2                           s390x  2.3.7-2.fc41               fedora                                                            328.9 KiB
 libmount                          s390x  2.40.2-8.fc42              fedora                                                            375.8 KiB
 libnghttp2                        s390x  1.64.0-1.fc42              fedora                                                            177.9 KiB
 libpkgconf                        s390x  2.3.0-1.fc42               fedora                                                             85.9 KiB
 libpsl                            s390x  0.21.5-4.fc41              fedora                                                             80.3 KiB
 libpwquality                      s390x  1.4.5-11.fc41              fedora                                                            420.9 KiB
 libselinux                        s390x  3.8-0.rc1.2.fc42           fedora                                                            199.4 KiB
 libsemanage                       s390x  3.8-0.rc1.1.fc42           fedora                                                            305.1 KiB
 libsepol                          s390x  3.8-0.rc1.1.fc42           fedora                                                            853.7 KiB
 libsmartcols                      s390x  2.40.2-8.fc42              fedora                                                            192.2 KiB
 libssh                            s390x  0.11.1-1.fc42              fedora                                                            585.3 KiB
 libssh-config                     noarch 0.11.1-1.fc42              fedora                                                            277.0   B
 libstdc++                         s390x  15.0.0-0.2.fc42            https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch   3.1 MiB
 libtasn1                          s390x  4.19.0-9.fc41              fedora                                                            187.5 KiB
 libtirpc                          s390x  1.3.6-1.fc42               fedora                                                            212.5 KiB
 libtool-ltdl                      s390x  2.5.4-1.fc42               copr_base                                                          67.9 KiB
 libunistring                      s390x  1.1-8.fc41                 fedora                                                              1.8 MiB
 libuuid                           s390x  2.40.2-8.fc42              fedora                                                             41.2 KiB
 libverto                          s390x  0.3.2-9.fc41               fedora                                                             29.3 KiB
 libxcrypt                         s390x  4.4.36-11.fc42             fedora                                                            271.2 KiB
 libxml2                           s390x  2.12.8-2.fc41              fedora                                                              1.9 MiB
 libzstd                           s390x  1.5.6-2.fc41               fedora                                                            875.7 KiB
 lua-libs                          s390x  5.4.7-1.fc42               fedora                                                            328.8 KiB
 lua-srpm-macros                   noarch 1-14.fc41                  fedora                                                              1.3 KiB
 lz4-libs                          s390x  1.10.0-1.fc41              fedora                                                            201.3 KiB
 mpfr                              s390x  4.2.1-5.fc41               fedora                                                            698.7 KiB
 ncurses-base                      noarch 6.5-2.20240629.fc41        fedora                                                            326.3 KiB
 ncurses-libs                      s390x  6.5-2.20240629.fc41        fedora                                                              1.1 MiB
 ocaml-srpm-macros                 noarch 10-3.fc41                  fedora                                                              1.9 KiB
 openblas-srpm-macros              noarch 2-18.fc41                  fedora                                                            112.0   B
 openldap                          s390x  2.6.8-6.fc42               fedora                                                            654.5 KiB
 openssl-libs                      s390x  1:3.2.2-8.fc42             fedora                                                              6.1 MiB
 p11-kit                           s390x  0.25.5-4.fc42              fedora                                                              2.5 MiB
 p11-kit-trust                     s390x  0.25.5-4.fc42              fedora                                                            479.2 KiB
 package-notes-srpm-macros         noarch 0.5-12.fc41                fedora                                                              1.6 KiB
 pam                               s390x  1.7.0-3.fc42               fedora                                                              1.5 MiB
 pam-libs                          s390x  1.7.0-3.fc42               fedora                                                            122.5 KiB
 pcre2                             s390x  10.44-1.fc41.1             fedora                                                            684.9 KiB
 pcre2-syntax                      noarch 10.44-1.fc41.1             fedora                                                            251.6 KiB
 perl-srpm-macros                  noarch 1-56.fc41                  fedora                                                            861.0   B
 pkgconf                           s390x  2.3.0-1.fc42               fedora                                                             92.4 KiB
 pkgconf-m4                        noarch 2.3.0-1.fc42               fedora                                                             14.4 KiB
 pkgconf-pkg-config                s390x  2.3.0-1.fc42               fedora                                                            988.0   B
 popt                              s390x  1.19-7.fc41                fedora                                                            144.7 KiB
 publicsuffix-list-dafsa           noarch 20240107-4.fc41            fedora                                                             67.5 KiB
 pyproject-srpm-macros             noarch 1.16.3-1.fc42              fedora                                                              1.9 KiB
 python-srpm-macros                noarch 3.13-3.fc41                fedora                                                             51.0 KiB
 qt5-srpm-macros                   noarch 5.15.15-1.fc42             fedora                                                            500.0   B
 qt6-srpm-macros                   noarch 6.8.1-4.fc42               fedora                                                            456.0   B
 readline                          s390x  8.2-11.fc42                fedora                                                            556.8 KiB
 rpm                               s390x  4.20.0-1.fc42              fedora                                                              3.1 MiB
 rpm-build-libs                    s390x  4.20.0-1.fc42              fedora                                                            218.4 KiB
 rpm-libs                          s390x  4.20.0-1.fc42              fedora                                                            813.6 KiB
 rpm-sequoia                       s390x  1.7.0-3.fc42               fedora                                                              3.2 MiB
 rust-srpm-macros                  noarch 26.3-3.fc42                fedora                                                              4.8 KiB
 setup                             noarch 2.15.0-5.fc41              fedora                                                            720.7 KiB
 sqlite-libs                       s390x  3.47.2-1.fc42              fedora                                                              1.6 MiB
 systemd-libs                      s390x  257-1.fc42                 fedora                                                              2.2 MiB
 util-linux-core                   s390x  2.40.2-8.fc42              fedora                                                              1.5 MiB
 xxhash-libs                       s390x  0.8.2-4.fc42               fedora                                                             68.0 KiB
 xz-libs                           s390x  1:5.6.3-2.fc42             fedora                                                            226.1 KiB
 zig-srpm-macros                   noarch 1-3.fc41                   fedora                                                              1.1 KiB
 zip                               s390x  3.0-42.fc42                fedora                                                            723.1 KiB
 zlib-ng-compat                    s390x  2.2.2-1.fc42               fedora                                                            109.4 KiB
 zstd                              s390x  1.5.6-2.fc41               fedora                                                              1.8 MiB
Installing groups:
 Buildsystem building group                                                                                                                     

Transaction Summary:
 Installing:       154 packages

Total size of inbound packages is 53 MiB. Need to download 0 B.
After this operation, 184 MiB extra will be used (install 184 MiB, remove 0 B).
[1/1] tar-2:1.35-4.fc41.s390x           100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[1/1] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/2] bzip2-0:1.0.8-19.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[2/2] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/3] rpm-build-0:4.20.0-1.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[3/3] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/4] unzip-0:6.0-65.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[4/4] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/5] cpio-0:2.15-2.fc41.s390x          100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[5/5] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/6] which-0:2.21-42.fc41.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[6/6] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/7] bash-0:5.2.37-1.fc42.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[7/7] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/8] coreutils-0:9.5-11.fc42.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[8/8] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[1/9] grep-0:3.11-9.fc41.s390x          100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[9/9] Total                             100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/10] patch-0:2.7.6-25.fc41.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[10/10] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/11] sed-0:4.9-3.fc41.s390x          100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[11/11] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/12] shadow-utils-2:4.17.0~rc1-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[12/12] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/13] util-linux-0:2.40.2-8.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[13/13] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/14] diffutils-0:3.10-8.fc41.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[14/14] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/15] fedora-release-common-0:42-0.11 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[15/15] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/16] findutils-1:4.10.0-4.fc41.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[16/16] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/17] gawk-0:5.3.0-4.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[17/17] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/18] glibc-minimal-langpack-0:2.40.9 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[18/18] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/19] gzip-0:1.13-2.fc41.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[19/19] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/20] info-0:7.1.1-2.fc42.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[20/20] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/21] xz-1:5.6.3-2.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[21/21] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/22] redhat-rpm-config-0:300-1.no_an 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[22/22] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/23] glibc-0:2.40.9000-24.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[23/23] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/24] libselinux-0:3.8-0.rc1.2.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[24/24] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/25] bzip2-libs-0:1.0.8-19.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[25/25] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/26] binutils-0:2.43.50-9.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[26/26] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/27] debugedit-0:5.1-2.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[27/27] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/28] elfutils-0:0.192-7.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[28/28] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/29] elfutils-libelf-0:0.192-7.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[29/29] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/30] file-0:5.45-8.fc42.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[30/30] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/31] libarchive-0:3.7.7-1.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[31/31] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/32] pkgconf-pkg-config-0:2.3.0-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[32/32] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/33] popt-0:1.19-7.fc41.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[33/33] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/34] readline-0:8.2-11.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[34/34] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/35] rpm-0:4.20.0-1.fc42.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[35/35] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/36] rpm-build-libs-0:4.20.0-1.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[36/36] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/37] rpm-libs-0:4.20.0-1.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[37/37] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/38] zstd-0:1.5.6-2.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[38/38] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/39] filesystem-0:3.18-29.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[39/39] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/40] ncurses-libs-0:6.5-2.20240629.f 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[40/40] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/41] coreutils-common-0:9.5-11.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[41/41] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/42] gmp-1:6.3.0-2.fc41.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[42/42] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/43] libattr-0:2.5.2-4.fc41.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[43/43] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/44] libcap-0:2.71-1.fc42.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[44/44] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/45] openssl-libs-1:3.2.2-8.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[45/45] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/46] systemd-libs-0:257-1.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[46/46] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/47] pcre2-0:10.44-1.fc41.1.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[47/47] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/48] ed-0:1.20.2-2.fc41.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[48/48] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/49] libeconf-0:0.7.5-1.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[49/49] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/50] libsemanage-0:3.8-0.rc1.1.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[50/50] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/51] libxcrypt-0:4.4.36-11.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[51/51] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/52] pam-libs-0:1.7.0-3.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[52/52] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/53] setup-0:2.15.0-5.fc41.noarch    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[53/53] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/54] libblkid-0:2.40.2-8.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[54/54] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/55] libcap-ng-0:0.8.5-3.fc41.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[55/55] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/56] libfdisk-0:2.40.2-8.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[56/56] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/57] libmount-0:2.40.2-8.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[57/57] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/58] libsmartcols-0:2.40.2-8.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[58/58] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/59] libuuid-0:2.40.2-8.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[59/59] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/60] pam-0:1.7.0-3.fc42.s390x        100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[60/60] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/61] util-linux-core-0:2.40.2-8.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[61/61] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/62] zlib-ng-compat-0:2.2.2-1.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[62/62] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/63] fedora-repos-0:42-0.3.noarch    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[63/63] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/64] mpfr-0:4.2.1-5.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[64/64] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/65] glibc-common-0:2.40.9000-24.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[65/65] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/66] xz-libs-1:5.6.3-2.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[66/66] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/67] ansible-srpm-macros-0:1-16.fc41 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[67/67] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/68] build-reproducibility-srpm-macr 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[68/68] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/69] dwz-0:0.15-8.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[69/69] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/70] efi-srpm-macros-0:5-13.fc42.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[70/70] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/71] filesystem-srpm-macros-0:3.18-2 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[71/71] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/72] fonts-srpm-macros-1:2.0.5-17.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[72/72] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/73] forge-srpm-macros-0:0.4.0-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[73/73] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/74] fpc-srpm-macros-0:1.3-13.fc41.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[74/74] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/75] ghc-srpm-macros-0:1.9.2-1.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[75/75] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/76] gnat-srpm-macros-0:6-6.fc41.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[76/76] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/77] go-srpm-macros-0:3.6.0-5.fc42.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[77/77] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/78] kernel-srpm-macros-0:1.0-24.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[78/78] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/79] lua-srpm-macros-0:1-14.fc41.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[79/79] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/80] ocaml-srpm-macros-0:10-3.fc41.n 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[80/80] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/81] openblas-srpm-macros-0:2-18.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[81/81] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/82] package-notes-srpm-macros-0:0.5 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[82/82] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/83] perl-srpm-macros-0:1-56.fc41.no 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[83/83] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/84] pyproject-srpm-macros-0:1.16.3- 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[84/84] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/85] python-srpm-macros-0:3.13-3.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[85/85] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/86] qt5-srpm-macros-0:5.15.15-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[86/86] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/87] qt6-srpm-macros-0:6.8.1-4.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[87/87] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/88] rust-srpm-macros-0:26.3-3.fc42. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[88/88] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/89] zig-srpm-macros-0:1-3.fc41.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[89/89] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/90] zip-0:3.0-42.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[90/90] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/91] glibc-gconv-extra-0:2.40.9000-2 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[91/91] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/92] basesystem-0:11-21.fc41.noarch  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[92/92] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/93] libsepol-0:3.8-0.rc1.1.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[93/93] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/94] alternatives-0:1.31-1.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[94/94] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/95] elfutils-debuginfod-client-0:0. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[95/95] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/96] jansson-0:2.14-1.fc42.s390x     100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[96/96] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/97] elfutils-libs-0:0.192-7.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[97/97] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/98] libzstd-0:1.5.6-2.fc41.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[98/98] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[ 1/99] file-libs-0:5.45-8.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[99/99] Total                           100% |   0.0   B/s |   0.0   B |  00m00s
[  1/100] libxml2-0:2.12.8-2.fc41.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[100/100] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/101] lz4-libs-0:1.10.0-1.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[101/101] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/102] pkgconf-0:2.3.0-1.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[102/102] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/103] pkgconf-m4-0:2.3.0-1.fc42.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[103/103] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/104] curl-0:8.11.1-2.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[104/104] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/105] lua-libs-0:5.4.7-1.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[105/105] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/106] rpm-sequoia-0:1.7.0-3.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[106/106] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/107] sqlite-libs-0:3.47.2-1.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[107/107] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/108] ncurses-base-0:6.5-2.20240629 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[108/108] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/109] ca-certificates-0:2024.2.69_v 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[109/109] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/110] crypto-policies-0:20241128-1. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[110/110] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/111] pcre2-syntax-0:10.44-1.fc41.1 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[111/111] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/112] gdbm-1:1.23-7.fc41.s390x      100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[112/112] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/113] gdbm-libs-1:1.23-7.fc41.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[113/113] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/114] libpwquality-0:1.4.5-11.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[114/114] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/115] libtirpc-0:1.3.6-1.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[115/115] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/116] fedora-gpg-keys-0:42-0.3.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[116/116] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/117] fedora-repos-rawhide-0:42-0.3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[117/117] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/118] add-determinism-0:0.4.3-1.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[118/118] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/119] json-c-0:0.18-1.fc42.s390x    100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[119/119] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/120] elfutils-default-yama-scope-0 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[120/120] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/121] libpkgconf-0:2.3.0-1.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[121/121] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/122] libffi-0:3.4.6-3.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[122/122] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/123] p11-kit-0:0.25.5-4.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[123/123] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/124] p11-kit-trust-0:0.25.5-4.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[124/124] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/125] cracklib-0:2.9.11-6.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[125/125] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/126] krb5-libs-0:1.21.3-3.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[126/126] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/127] libcom_err-0:1.47.1-6.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[127/127] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/128] libtasn1-0:4.19.0-9.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[128/128] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/129] keyutils-libs-0:1.6.3-4.fc41. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[129/129] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/130] libverto-0:0.3.2-9.fc41.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[130/130] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/131] libgcc-0:15.0.0-0.2.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[131/131] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/132] libstdc++-0:15.0.0-0.2.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[132/132] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/133] audit-libs-0:4.0.2-1.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[133/133] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/134] authselect-libs-0:1.5.0-8.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[134/134] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/135] libacl-0:2.3.2-2.fc42.s390x   100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[135/135] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/136] libgomp-0:15.0.0-0.2.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[136/136] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/137] authselect-0:1.5.0-8.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[137/137] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/138] fedora-release-0:42-0.11.noar 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[138/138] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/139] gdb-minimal-0:15.2-4.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[139/139] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/140] xxhash-libs-0:0.8.2-4.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[140/140] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/141] fedora-release-identity-basic 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[141/141] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/142] libcurl-0:8.11.1-2.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[142/142] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/143] libbrotli-0:1.1.0-5.fc41.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[143/143] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/144] libidn2-0:2.3.7-2.fc41.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[144/144] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/145] libnghttp2-0:1.64.0-1.fc42.s3 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[145/145] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/146] libpsl-0:0.21.5-4.fc41.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[146/146] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/147] libssh-0:0.11.1-1.fc42.s390x  100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[147/147] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/148] openldap-0:2.6.8-6.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[148/148] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/149] libunistring-0:1.1-8.fc41.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[149/149] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/150] publicsuffix-list-dafsa-0:202 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[150/150] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/151] libssh-config-0:0.11.1-1.fc42 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[151/151] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/152] cyrus-sasl-lib-0:2.1.28-27.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[152/152] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/153] libevent-0:2.1.12-14.fc41.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[153/153] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
[  1/154] libtool-ltdl-0:2.5.4-1.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
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[154/154] Total                         100% |   0.0   B/s |   0.0   B |  00m00s
Running transaction
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0x105EF944:
 UserID     : "Fedora (42) <fedora-42-primary@fedoraproject.org>"
 Fingerprint: B0F4950458F69E1150C6C5EDC8AC4916105EF944
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-42-primary
The key was successfully imported.
Importing OpenPGP key 0xE99D6AD1:
 UserID     : "Fedora (41) <fedora-41-primary@fedoraproject.org>"
 Fingerprint: 466CF2D8B60BC3057AA9453ED0622462E99D6AD1
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-41-primary
The key was successfully imported.
Importing OpenPGP key 0x31645531:
 UserID     : "Fedora (43) <fedora-43-primary@fedoraproject.org>"
 Fingerprint: C6E7F081CF80E13146676E88829B606631645531
 From       : file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-43-primary
The key was successfully imported.
[  1/156] Verify package files          100% | 802.0   B/s | 154.0   B |  00m00s
>>> Running pre-transaction scriptlet: filesystem-0:3.18-29.fc42.s390x
>>> Finished pre-transaction scriptlet: filesystem-0:3.18-29.fc42.s390x
>>> [RPM] /var/lib/mock/fedora-rawhide-s390x-1734635205.561201/root/var/cache/dn
[  2/156] Prepare transaction           100% |   2.8 KiB/s | 154.0   B |  00m00s
[  3/156] Installing libgcc-0:15.0.0-0. 100% | 164.5 MiB/s | 168.4 KiB |  00m00s
[  4/156] Installing libssh-config-0:0. 100% |   0.0   B/s | 816.0   B |  00m00s
[  5/156] Installing publicsuffix-list- 100% |   0.0   B/s |  68.3 KiB |  00m00s
[  6/156] Installing fedora-release-ide 100% |   0.0   B/s | 976.0   B |  00m00s
[  7/156] Installing fedora-gpg-keys-0: 100% |  42.0 MiB/s | 172.2 KiB |  00m00s
[  8/156] Installing fedora-repos-rawhi 100% |   0.0   B/s |   2.4 KiB |  00m00s
[  9/156] Installing fedora-repos-0:42- 100% |   0.0   B/s |   5.7 KiB |  00m00s
[ 10/156] Installing fedora-release-com 100% |  23.6 MiB/s |  24.1 KiB |  00m00s
[ 11/156] Installing fedora-release-0:4 100% |   0.0   B/s | 124.0   B |  00m00s
[ 12/156] Installing setup-0:2.15.0-5.f 100% |  33.8 MiB/s | 726.1 KiB |  00m00s
>>> [RPM] /etc/hosts created as /etc/hosts.rpmnew
[ 13/156] Installing filesystem-0:3.18- 100% |   2.7 MiB/s | 212.6 KiB |  00m00s
[ 14/156] Installing basesystem-0:11-21 100% |   0.0   B/s | 124.0   B |  00m00s
[ 15/156] Installing pcre2-syntax-0:10. 100% | 248.1 MiB/s | 254.1 KiB |  00m00s
[ 16/156] Installing ncurses-base-0:6.5 100% |  68.7 MiB/s | 351.7 KiB |  00m00s
[ 17/156] Installing glibc-minimal-lang 100% |   0.0   B/s | 124.0   B |  00m00s
[ 18/156] Installing ncurses-libs-0:6.5 100% | 177.1 MiB/s |   1.1 MiB |  00m00s
[ 19/156] Installing glibc-0:2.40.9000- 100% | 220.8 MiB/s |   5.1 MiB |  00m00s
[ 20/156] Installing bash-0:5.2.37-1.fc 100% | 336.1 MiB/s |   8.4 MiB |  00m00s
[ 21/156] Installing glibc-common-0:2.4 100% | 152.4 MiB/s |   1.1 MiB |  00m00s
[ 22/156] Installing glibc-gconv-extra- 100% | 220.9 MiB/s |   6.6 MiB |  00m00s
[ 23/156] Installing zlib-ng-compat-0:2 100% | 107.7 MiB/s | 110.3 KiB |  00m00s
[ 24/156] Installing bzip2-libs-0:1.0.8 100% |   0.0   B/s |  89.6 KiB |  00m00s
[ 25/156] Installing xz-libs-1:5.6.3-2. 100% | 221.9 MiB/s | 227.2 KiB |  00m00s
[ 26/156] Installing popt-0:1.19-7.fc41 100% |  73.9 MiB/s | 151.3 KiB |  00m00s
[ 27/156] Installing readline-0:8.2-11. 100% | 272.9 MiB/s | 558.9 KiB |  00m00s
[ 28/156] Installing libuuid-0:2.40.2-8 100% |   0.0   B/s |  42.3 KiB |  00m00s
[ 29/156] Installing libblkid-0:2.40.2- 100% | 280.8 MiB/s | 287.6 KiB |  00m00s
[ 30/156] Installing gmp-1:6.3.0-2.fc41 100% | 251.4 MiB/s | 772.2 KiB |  00m00s
[ 31/156] Installing libattr-0:2.5.2-4. 100% |   0.0   B/s |  29.3 KiB |  00m00s
[ 32/156] Installing libacl-0:2.3.2-2.f 100% |   0.0   B/s |  34.9 KiB |  00m00s
[ 33/156] Installing libxcrypt-0:4.4.36 100% | 267.5 MiB/s | 273.9 KiB |  00m00s
[ 34/156] Installing libzstd-0:1.5.6-2. 100% | 285.5 MiB/s | 877.0 KiB |  00m00s
[ 35/156] Installing elfutils-libelf-0: 100% | 391.6 MiB/s |   1.2 MiB |  00m00s
[ 36/156] Installing libstdc++-0:15.0.0 100% | 307.5 MiB/s |   3.1 MiB |  00m00s
[ 37/156] Installing libeconf-0:0.7.5-1 100% |   0.0   B/s |  64.2 KiB |  00m00s
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[ 40/156] Installing mpfr-0:4.2.1-5.fc4 100% | 228.0 MiB/s | 700.4 KiB |  00m00s
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[ 42/156] Installing unzip-0:6.0-65.fc4 100% | 736.0 MiB/s |   2.2 MiB |  00m00s
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[ 45/156] Installing crypto-policies-0: 100% |  40.0 MiB/s | 163.7 KiB |  00m00s
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[ 52/156] Installing libcap-0:2.71-1.fc 100% | 105.8 MiB/s | 216.7 KiB |  00m00s
[ 53/156] Installing systemd-libs-0:257 100% | 249.5 MiB/s |   2.2 MiB |  00m00s
[ 54/156] Installing libsmartcols-0:2.4 100% | 188.7 MiB/s | 193.2 KiB |  00m00s
[ 55/156] Installing libsepol-0:3.8-0.r 100% | 278.2 MiB/s | 854.7 KiB |  00m00s
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[ 57/156] Installing sed-0:4.9-3.fc41.s 100% | 215.2 MiB/s | 881.4 KiB |  00m00s
[ 58/156] Installing findutils-1:4.10.0 100% | 315.4 MiB/s |   1.9 MiB |  00m00s
[ 59/156] Installing libmount-0:2.40.2- 100% | 184.0 MiB/s | 376.9 KiB |  00m00s
[ 60/156] Installing alternatives-0:1.3 100% |   0.0   B/s |  62.2 KiB |  00m00s
[ 61/156] Installing lz4-libs-0:1.10.0- 100% | 197.6 MiB/s | 202.4 KiB |  00m00s
[ 62/156] Installing lua-libs-0:5.4.7-1 100% | 322.3 MiB/s | 330.0 KiB |  00m00s
[ 63/156] Installing libffi-0:3.4.6-3.f 100% |   0.0   B/s |  67.3 KiB |  00m00s
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[ 65/156] Installing libtasn1-0:4.19.0- 100% | 184.9 MiB/s | 189.3 KiB |  00m00s
[ 66/156] Installing p11-kit-0:0.25.5-4 100% | 251.2 MiB/s |   2.5 MiB |  00m00s
[ 67/156] Installing libunistring-0:1.1 100% | 295.6 MiB/s |   1.8 MiB |  00m00s
[ 68/156] Installing libidn2-0:2.3.7-2. 100% | 163.5 MiB/s | 334.9 KiB |  00m00s
[ 69/156] Installing libpsl-0:0.21.5-4. 100% |   0.0   B/s |  81.4 KiB |  00m00s
[ 70/156] Installing p11-kit-trust-0:0. 100% |  78.3 MiB/s | 480.9 KiB |  00m00s
[ 71/156] Installing zstd-0:1.5.6-2.fc4 100% | 305.8 MiB/s |   1.8 MiB |  00m00s
[ 72/156] Installing util-linux-core-0: 100% | 220.5 MiB/s |   1.5 MiB |  00m00s
[ 73/156] Installing tar-2:1.35-4.fc41. 100% | 302.0 MiB/s |   3.0 MiB |  00m00s
[ 74/156] Installing libsemanage-0:3.8- 100% |  99.9 MiB/s | 306.9 KiB |  00m00s
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[ 76/156] Installing zip-0:3.0-42.fc42. 100% | 236.7 MiB/s | 727.0 KiB |  00m00s
[ 77/156] Installing gdbm-1:1.23-7.fc41 100% | 238.7 MiB/s | 488.8 KiB |  00m00s
[ 78/156] Installing cyrus-sasl-lib-0:2 100% | 298.6 MiB/s |   2.4 MiB |  00m00s
[ 79/156] Installing libfdisk-0:2.40.2- 100% | 193.3 MiB/s | 395.9 KiB |  00m00s
[ 80/156] Installing libxml2-0:2.12.8-2 100% | 268.5 MiB/s |   1.9 MiB |  00m00s
[ 81/156] Installing bzip2-0:1.0.8-19.f 100% | 101.3 MiB/s | 103.7 KiB |  00m00s
[ 82/156] Installing sqlite-libs-0:3.47 100% | 264.5 MiB/s |   1.6 MiB |  00m00s
[ 83/156] Installing add-determinism-0: 100% | 299.0 MiB/s |   3.3 MiB |  00m00s
[ 84/156] Installing build-reproducibil 100% |   0.0   B/s |   1.0 KiB |  00m00s
[ 85/156] Installing ed-0:1.20.2-2.fc41 100% | 149.3 MiB/s | 152.9 KiB |  00m00s
[ 86/156] Installing patch-0:2.7.6-25.f 100% | 292.8 MiB/s | 299.9 KiB |  00m00s
[ 87/156] Installing filesystem-srpm-ma 100% |   0.0   B/s |  36.8 KiB |  00m00s
[ 88/156] Installing elfutils-default-y 100% | 681.0 KiB/s |   2.0 KiB |  00m00s
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[ 90/156] Installing cpio-0:2.15-2.fc41 100% | 223.8 MiB/s |   1.1 MiB |  00m00s
[ 91/156] Installing diffutils-0:3.10-8 100% | 271.4 MiB/s |   1.6 MiB |  00m00s
[ 92/156] Installing jansson-0:2.14-1.f 100% |  92.1 MiB/s |  94.3 KiB |  00m00s
[ 93/156] Installing json-c-0:0.18-1.fc 100% |  82.2 MiB/s |  84.1 KiB |  00m00s
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[ 96/156] Installing keyutils-libs-0:1. 100% |   0.0   B/s |  55.6 KiB |  00m00s
[ 97/156] Installing libverto-0:0.3.2-9 100% |   0.0   B/s |  31.1 KiB |  00m00s
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[ 99/156] Installing xxhash-libs-0:0.8. 100% |   0.0   B/s |  69.4 KiB |  00m00s
[100/156] Installing libbrotli-0:1.1.0- 100% | 226.4 MiB/s | 927.4 KiB |  00m00s
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[110/156] Installing openblas-srpm-macr 100% |   0.0   B/s | 392.0   B |  00m00s
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[112/156] Installing kernel-srpm-macros 100% |   0.0   B/s |   2.3 KiB |  00m00s
[113/156] Installing gnat-srpm-macros-0 100% |   0.0   B/s |   1.3 KiB |  00m00s
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[115/156] Installing fpc-srpm-macros-0: 100% |   0.0   B/s | 420.0   B |  00m00s
[116/156] Installing ansible-srpm-macro 100% |  35.4 MiB/s |  36.2 KiB |  00m00s
[117/156] Installing coreutils-common-0 100% | 329.1 MiB/s |  11.2 MiB |  00m00s
[118/156] Installing openssl-libs-1:3.2 100% | 279.2 MiB/s |   6.1 MiB |  00m00s
[119/156] Installing coreutils-0:9.5-11 100% | 249.0 MiB/s |   5.7 MiB |  00m00s
[120/156] Installing ca-certificates-0: 100% |   1.7 MiB/s |   2.4 MiB |  00m01s
[121/156] Installing krb5-libs-0:1.21.3 100% | 219.8 MiB/s |   2.4 MiB |  00m00s
[122/156] Installing libarchive-0:3.7.7 100% | 249.5 MiB/s |   1.0 MiB |  00m00s
[123/156] Installing gzip-0:1.13-2.fc41 100% | 198.4 MiB/s | 406.3 KiB |  00m00s
[124/156] Installing authselect-libs-0: 100% | 162.6 MiB/s | 832.3 KiB |  00m00s
[125/156] Installing cracklib-0:2.9.11- 100% |  85.1 MiB/s | 261.4 KiB |  00m00s
[126/156] Installing libpwquality-0:1.4 100% | 105.8 MiB/s | 433.3 KiB |  00m00s
[127/156] Installing libtirpc-0:1.3.6-1 100% | 104.6 MiB/s | 214.3 KiB |  00m00s
[128/156] Installing pam-0:1.7.0-3.fc42 100% | 132.8 MiB/s |   1.6 MiB |  00m00s
[129/156] Installing libssh-0:0.11.1-1. 100% | 286.8 MiB/s | 587.4 KiB |  00m00s
[130/156] Installing rpm-sequoia-0:1.7. 100% | 287.3 MiB/s |   3.2 MiB |  00m00s
[131/156] Installing rpm-libs-0:4.20.0- 100% | 265.3 MiB/s | 815.1 KiB |  00m00s
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[134/156] Installing openldap-0:2.6.8-6 100% | 214.3 MiB/s | 658.3 KiB |  00m00s
[135/156] Installing libcurl-0:8.11.1-2 100% | 210.5 MiB/s | 862.1 KiB |  00m00s
[136/156] Installing elfutils-debuginfo 100% |  73.5 MiB/s |  75.3 KiB |  00m00s
[137/156] Installing binutils-0:2.43.50 100% | 334.3 MiB/s |  27.4 MiB |  00m00s
[138/156] Installing elfutils-0:0.192-7 100% | 325.6 MiB/s |   2.9 MiB |  00m00s
[139/156] Installing gdb-minimal-0:15.2 100% | 312.9 MiB/s |  14.7 MiB |  00m00s
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[141/156] Installing curl-0:8.11.1-2.fc 100% |  51.9 MiB/s | 478.3 KiB |  00m00s
[142/156] Installing rpm-0:4.20.0-1.fc4 100% | 167.0 MiB/s |   2.5 MiB |  00m00s
[143/156] Installing efi-srpm-macros-0: 100% |   0.0   B/s |  41.2 KiB |  00m00s
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[147/156] Installing forge-srpm-macros- 100% |   0.0   B/s |  40.3 KiB |  00m00s
[148/156] Installing go-srpm-macros-0:3 100% |   0.0   B/s |  62.0 KiB |  00m00s
[149/156] Installing python-srpm-macros 100% |   0.0   B/s |  52.2 KiB |  00m00s
[150/156] Installing redhat-rpm-config- 100% |  94.3 MiB/s | 193.2 KiB |  00m00s
[151/156] Installing rpm-build-0:4.20.0 100% | 102.0 MiB/s | 209.0 KiB |  00m00s
[152/156] Installing pyproject-srpm-mac 100% |   1.2 MiB/s |   2.5 KiB |  00m00s
[153/156] Installing util-linux-0:2.40. 100% | 177.6 MiB/s |   3.7 MiB |  00m00s
[154/156] Installing authselect-0:1.5.0 100% |  76.3 MiB/s | 156.2 KiB |  00m00s
[155/156] Installing which-0:2.21-42.fc 100% |  84.1 MiB/s |  86.1 KiB |  00m00s
[156/156] Installing info-0:7.1.1-2.fc4 100% | 231.9 KiB/s | 409.5 KiB |  00m02s
Warning: skipped OpenPGP checks for 9 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch
Complete!
Finish: installing minimal buildroot with dnf5
Start: creating root cache
Finish: creating root cache
Finish: chroot init
INFO: Installed packages:
INFO: add-determinism-0.4.3-1.fc42.s390x
alternatives-1.31-1.fc42.s390x
ansible-srpm-macros-1-16.fc41.noarch
audit-libs-4.0.2-1.fc42.s390x
authselect-1.5.0-8.fc42.s390x
authselect-libs-1.5.0-8.fc42.s390x
basesystem-11-21.fc41.noarch
bash-5.2.37-1.fc42.s390x
binutils-2.43.50-9.fc42.s390x
build-reproducibility-srpm-macros-0.4.3-1.fc42.noarch
bzip2-1.0.8-19.fc41.s390x
bzip2-libs-1.0.8-19.fc41.s390x
ca-certificates-2024.2.69_v8.0.401-3.fc42.noarch
coreutils-9.5-11.fc42.s390x
coreutils-common-9.5-11.fc42.s390x
cpio-2.15-2.fc41.s390x
cracklib-2.9.11-6.fc41.s390x
crypto-policies-20241128-1.gitbb7b0b0.fc42.noarch
curl-8.11.1-2.fc42.s390x
cyrus-sasl-lib-2.1.28-27.fc41.s390x
debugedit-5.1-2.fc42.s390x
diffutils-3.10-8.fc41.s390x
dwz-0.15-8.fc42.s390x
ed-1.20.2-2.fc41.s390x
efi-srpm-macros-5-13.fc42.noarch
elfutils-0.192-7.fc42.s390x
elfutils-debuginfod-client-0.192-7.fc42.s390x
elfutils-default-yama-scope-0.192-7.fc42.noarch
elfutils-libelf-0.192-7.fc42.s390x
elfutils-libs-0.192-7.fc42.s390x
fedora-gpg-keys-42-0.3.noarch
fedora-release-42-0.11.noarch
fedora-release-common-42-0.11.noarch
fedora-release-identity-basic-42-0.11.noarch
fedora-repos-42-0.3.noarch
fedora-repos-rawhide-42-0.3.noarch
file-5.45-8.fc42.s390x
file-libs-5.45-8.fc42.s390x
filesystem-3.18-29.fc42.s390x
filesystem-srpm-macros-3.18-29.fc42.noarch
findutils-4.10.0-4.fc41.s390x
fonts-srpm-macros-2.0.5-17.fc41.noarch
forge-srpm-macros-0.4.0-1.fc42.noarch
fpc-srpm-macros-1.3-13.fc41.noarch
gawk-5.3.0-4.fc41.s390x
gdb-minimal-15.2-4.fc42.s390x
gdbm-1.23-7.fc41.s390x
gdbm-libs-1.23-7.fc41.s390x
ghc-srpm-macros-1.9.2-1.fc42.noarch
glibc-2.40.9000-24.fc42.s390x
glibc-common-2.40.9000-24.fc42.s390x
glibc-gconv-extra-2.40.9000-24.fc42.s390x
glibc-minimal-langpack-2.40.9000-24.fc42.s390x
gmp-6.3.0-2.fc41.s390x
gnat-srpm-macros-6-6.fc41.noarch
go-srpm-macros-3.6.0-5.fc42.noarch
gpg-pubkey-105ef944-65ca83d1
gpg-pubkey-31645531-66b6dccf
gpg-pubkey-e99d6ad1-64d2612c
grep-3.11-9.fc41.s390x
gzip-1.13-2.fc41.s390x
info-7.1.1-2.fc42.s390x
jansson-2.14-1.fc42.s390x
json-c-0.18-1.fc42.s390x
kernel-srpm-macros-1.0-24.fc41.noarch
keyutils-libs-1.6.3-4.fc41.s390x
krb5-libs-1.21.3-3.fc42.s390x
libacl-2.3.2-2.fc42.s390x
libarchive-3.7.7-1.fc42.s390x
libattr-2.5.2-4.fc41.s390x
libblkid-2.40.2-8.fc42.s390x
libbrotli-1.1.0-5.fc41.s390x
libcap-2.71-1.fc42.s390x
libcap-ng-0.8.5-3.fc41.s390x
libcom_err-1.47.1-6.fc42.s390x
libcurl-8.11.1-2.fc42.s390x
libeconf-0.7.5-1.fc42.s390x
libevent-2.1.12-14.fc41.s390x
libfdisk-2.40.2-8.fc42.s390x
libffi-3.4.6-3.fc42.s390x
libgcc-15.0.0-0.2.fc42.s390x
libgomp-15.0.0-0.2.fc42.s390x
libidn2-2.3.7-2.fc41.s390x
libmount-2.40.2-8.fc42.s390x
libnghttp2-1.64.0-1.fc42.s390x
libpkgconf-2.3.0-1.fc42.s390x
libpsl-0.21.5-4.fc41.s390x
libpwquality-1.4.5-11.fc41.s390x
libselinux-3.8-0.rc1.2.fc42.s390x
libsemanage-3.8-0.rc1.1.fc42.s390x
libsepol-3.8-0.rc1.1.fc42.s390x
libsmartcols-2.40.2-8.fc42.s390x
libssh-0.11.1-1.fc42.s390x
libssh-config-0.11.1-1.fc42.noarch
libstdc++-15.0.0-0.2.fc42.s390x
libtasn1-4.19.0-9.fc41.s390x
libtirpc-1.3.6-1.fc42.s390x
libtool-ltdl-2.5.4-1.fc42.s390x
libunistring-1.1-8.fc41.s390x
libuuid-2.40.2-8.fc42.s390x
libverto-0.3.2-9.fc41.s390x
libxcrypt-4.4.36-11.fc42.s390x
libxml2-2.12.8-2.fc41.s390x
libzstd-1.5.6-2.fc41.s390x
lua-libs-5.4.7-1.fc42.s390x
lua-srpm-macros-1-14.fc41.noarch
lz4-libs-1.10.0-1.fc41.s390x
mpfr-4.2.1-5.fc41.s390x
ncurses-base-6.5-2.20240629.fc41.noarch
ncurses-libs-6.5-2.20240629.fc41.s390x
ocaml-srpm-macros-10-3.fc41.noarch
openblas-srpm-macros-2-18.fc41.noarch
openldap-2.6.8-6.fc42.s390x
openssl-libs-3.2.2-8.fc42.s390x
p11-kit-0.25.5-4.fc42.s390x
p11-kit-trust-0.25.5-4.fc42.s390x
package-notes-srpm-macros-0.5-12.fc41.noarch
pam-1.7.0-3.fc42.s390x
pam-libs-1.7.0-3.fc42.s390x
patch-2.7.6-25.fc41.s390x
pcre2-10.44-1.fc41.1.s390x
pcre2-syntax-10.44-1.fc41.1.noarch
perl-srpm-macros-1-56.fc41.noarch
pkgconf-2.3.0-1.fc42.s390x
pkgconf-m4-2.3.0-1.fc42.noarch
pkgconf-pkg-config-2.3.0-1.fc42.s390x
popt-1.19-7.fc41.s390x
publicsuffix-list-dafsa-20240107-4.fc41.noarch
pyproject-srpm-macros-1.16.3-1.fc42.noarch
python-srpm-macros-3.13-3.fc41.noarch
qt5-srpm-macros-5.15.15-1.fc42.noarch
qt6-srpm-macros-6.8.1-4.fc42.noarch
readline-8.2-11.fc42.s390x
redhat-rpm-config-300-1.no_annobin.0.fc42.noarch
rpm-4.20.0-1.fc42.s390x
rpm-build-4.20.0-1.fc42.s390x
rpm-build-libs-4.20.0-1.fc42.s390x
rpm-libs-4.20.0-1.fc42.s390x
rpm-sequoia-1.7.0-3.fc42.s390x
rust-srpm-macros-26.3-3.fc42.noarch
sed-4.9-3.fc41.s390x
setup-2.15.0-5.fc41.noarch
shadow-utils-4.17.0~rc1-1.fc42.s390x
sqlite-libs-3.47.2-1.fc42.s390x
systemd-libs-257-1.fc42.s390x
tar-1.35-4.fc41.s390x
unzip-6.0-65.fc42.s390x
util-linux-2.40.2-8.fc42.s390x
util-linux-core-2.40.2-8.fc42.s390x
which-2.21-42.fc41.s390x
xxhash-libs-0.8.2-4.fc42.s390x
xz-5.6.3-2.fc42.s390x
xz-libs-5.6.3-2.fc42.s390x
zig-srpm-macros-1-3.fc41.noarch
zip-3.0-42.fc42.s390x
zlib-ng-compat-2.2.2-1.fc42.s390x
zstd-1.5.6-2.fc41.s390x
Start: buildsrpm
Start: rpmbuild -bs
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721174400
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-23.fc42.src.rpm
Finish: rpmbuild -bs
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1734635205.561201/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
Finish: buildsrpm
INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-8xak1nt3/autodocksuite/autodocksuite.spec) Config(child) 0 minutes 16 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
INFO: Start(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-23.fc42.src.rpm)  Config(fedora-rawhide-s390x)
Start(bootstrap): chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1734635205.561201/root.
INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-s390x-bootstrap-1734635205.561201/root.
INFO: calling preinit hooks
INFO: enabled root cache
INFO: enabled package manager cache
Start(bootstrap): cleaning package manager metadata
Finish(bootstrap): cleaning package manager metadata
Finish(bootstrap): chroot init
Start: chroot init
INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-s390x-1734635205.561201/root.
INFO: calling preinit hooks
INFO: enabled root cache
Start: unpacking root cache
Finish: unpacking root cache
INFO: enabled package manager cache
Start: cleaning package manager metadata
Finish: cleaning package manager metadata
INFO: enabled HW Info plugin
INFO: Buildroot is handled by package management downloaded with a bootstrap image:
  rpm-4.20.0-1.fc42.s390x
  rpm-sequoia-1.7.0-3.fc42.s390x
  dnf5-5.2.8.1-2.fc42.s390x
  dnf5-plugins-5.2.8.1-2.fc42.s390x
Finish: chroot init
Start: build phase for autodocksuite-4.2.6-23.fc42.src.rpm
Start: build setup for autodocksuite-4.2.6-23.fc42.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721174400
Wrote: /builddir/build/SRPMS/autodocksuite-4.2.6-23.fc42.src.rpm
Updating and loading repositories:
 fedora                                 100% |  27.2 KiB/s |   3.0 KiB |  00m00s
 Copr repository                        100% |  17.0 KiB/s |   1.5 KiB |  00m00s
 Additional repo https_fedorapeople_org 100% |  25.9 KiB/s |   1.5 KiB |  00m00s
Repositories loaded.
Package             Arch   Version              Repository                                                             Size
Installing:
 gcc-c++            s390x  15.0.0-0.2.fc42      https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch  29.9 MiB
 make               s390x  1:4.4.1-9.fc42       fedora                                                              1.9 MiB
 tcsh               s390x  6.24.14-1.fc42       fedora                                                              1.3 MiB
Installing dependencies:
 annobin-docs       noarch 12.79-1.fc42         copr_base                                                          98.6 KiB
 annobin-plugin-gcc s390x  12.79-1.fc42         copr_base                                                         985.0 KiB
 cpp                s390x  15.0.0-0.2.fc42      https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch  26.6 MiB
 gcc                s390x  15.0.0-0.2.fc42      https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch  79.2 MiB
 gcc-plugin-annobin s390x  15.0.0-0.2.fc42      https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch  51.3 KiB
 glibc-devel        s390x  2.40.9000-24.fc42    fedora                                                              2.6 MiB
 kernel-headers     s390x  6.13.0-0.rc3.29.fc42 fedora                                                              6.5 MiB
 libasan            s390x  15.0.0-0.2.fc42      https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch   1.6 MiB
 libatomic          s390x  15.0.0-0.2.fc42      https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch  26.0 KiB
 libmpc             s390x  1.3.1-6.fc41         fedora                                                            164.5 KiB
 libstdc++-devel    s390x  15.0.0-0.2.fc42      https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch  15.4 MiB
 libubsan           s390x  15.0.0-0.2.fc42      https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch 480.5 KiB
 libxcrypt-devel    s390x  4.4.36-11.fc42       fedora                                                             30.5 KiB

Transaction Summary:
 Installing:        16 packages

Total size of inbound packages is 60 MiB. Need to download 15 MiB.
After this operation, 167 MiB extra will be used (install 167 MiB, remove 0 B).
[1/2] make-1:4.4.1-9.fc42.s390x         100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[2/4] libmpc-0:1.3.1-6.fc41.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[3/5] gcc-0:15.0.0-0.2.fc42.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[4/7] glibc-devel-0:2.40.9000-24.fc42.s 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[5/8] cpp-0:15.0.0-0.2.fc42.s390x       100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[6/9] kernel-headers-0:6.13.0-0.rc3.29. 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 7/10] libxcrypt-devel-0:4.4.36-11.fc4 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 8/11] libasan-0:15.0.0-0.2.fc42.s390x 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[ 9/12] libatomic-0:15.0.0-0.2.fc42.s39 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[10/13] libubsan-0:15.0.0-0.2.fc42.s390 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[11/14] gcc-plugin-annobin-0:15.0.0-0.2 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[12/15] annobin-plugin-gcc-0:12.79-1.fc 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[13/16] annobin-docs-0:12.79-1.fc42.noa 100% |   0.0   B/s |   0.0   B |  00m00s
>>> Already downloaded
[14/16] tcsh-0:6.24.14-1.fc42.s390x     100% |  12.9 MiB/s | 474.5 KiB |  00m00s
[15/16] libstdc++-devel-0:15.0.0-0.2.fc 100% |  14.1 MiB/s |   2.7 MiB |  00m00s
[16/16] gcc-c++-0:15.0.0-0.2.fc42.s390x 100% |  27.2 MiB/s |  11.9 MiB |  00m00s
--------------------------------------------------------------------------------
[16/16] Total                           100% |  29.8 MiB/s |  15.0 MiB |  00m01s
Running transaction
[ 1/18] Verify package files            100% |  86.0   B/s |  16.0   B |  00m00s
[ 2/18] Prepare transaction             100% | 516.0   B/s |  16.0   B |  00m00s
[ 3/18] Installing libmpc-0:1.3.1-6.fc4 100% | 162.1 MiB/s | 166.0 KiB |  00m00s
[ 4/18] Installing cpp-0:15.0.0-0.2.fc4 100% | 283.4 MiB/s |  26.6 MiB |  00m00s
[ 5/18] Installing annobin-docs-0:12.79 100% |   0.0   B/s |  99.7 KiB |  00m00s
[ 6/18] Installing libubsan-0:15.0.0-0. 100% | 235.0 MiB/s | 481.4 KiB |  00m00s
[ 7/18] Installing libatomic-0:15.0.0-0 100% |   0.0   B/s |  26.9 KiB |  00m00s
[ 8/18] Installing libasan-0:15.0.0-0.2 100% | 198.9 MiB/s |   1.6 MiB |  00m00s
[ 9/18] Installing kernel-headers-0:6.1 100% | 194.9 MiB/s |   6.6 MiB |  00m00s
[10/18] Installing libxcrypt-devel-0:4. 100% |  16.0 MiB/s |  32.9 KiB |  00m00s
[11/18] Installing glibc-devel-0:2.40.9 100% | 176.4 MiB/s |   2.6 MiB |  00m00s
[12/18] Installing libstdc++-devel-0:15 100% | 346.1 MiB/s |  15.6 MiB |  00m00s
[13/18] Installing make-1:4.4.1-9.fc42. 100% | 266.1 MiB/s |   1.9 MiB |  00m00s
[14/18] Installing gcc-0:15.0.0-0.2.fc4 100% | 296.8 MiB/s |  79.2 MiB |  00m00s
[15/18] Installing gcc-c++-0:15.0.0-0.2 100% | 266.7 MiB/s |  29.9 MiB |  00m00s
[16/18] Installing gcc-plugin-annobin-0 100% |   5.2 MiB/s |  52.9 KiB |  00m00s
[17/18] Installing annobin-plugin-gcc-0 100% |  74.1 MiB/s | 986.7 KiB |  00m00s
[18/18] Installing tcsh-0:6.24.14-1.fc4 100% |  14.5 MiB/s |   1.3 MiB |  00m00s
Warning: skipped OpenPGP checks for 10 packages from repositories: copr_base, https_fedorapeople_org_dmalcolm_gcc_gcc_15_mass_prebuild_basearch
Complete!
Finish: build setup for autodocksuite-4.2.6-23.fc42.src.rpm
Start: rpmbuild autodocksuite-4.2.6-23.fc42.src.rpm
Building target platforms: s390x
Building for target s390x
setting SOURCE_DATE_EPOCH=1721174400
Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.3buDbe
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ test -d /builddir/build/BUILD/autodocksuite-4.2.6-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/autodocksuite-4.2.6-build
+ /usr/bin/rm -rf /builddir/build/BUILD/autodocksuite-4.2.6-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/autodocksuite-4.2.6-build
+ /usr/bin/mkdir -p /builddir/build/BUILD/autodocksuite-4.2.6-build/SPECPARTS
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.IEVzbl
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ rm -rf src
+ /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/autodocksuite-4.2.6-src.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd src
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.Sx1ZCV
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
~/build/BUILD/autodocksuite-4.2.6-build/src/autodock ~/build/BUILD/autodocksuite-4.2.6-build/src
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd src
+ pushd autodock
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-07-19 01:58:48.000000000 +0000
+++ ./configure	2024-12-19 19:07:10.657549734 +0000
@@ -1874,7 +1874,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=s390x-redhat-linux --host=s390x-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gawk... (cached) gawk
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for s390x-redhat-linux-ranlib... no
checking for ranlib... ranlib
checking build system type... s390x-redhat-linux-gnu
checking host system type... s390x-redhat-linux-gnu
checking for s390x-redhat-linux-gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for getpid... yes
checking for GetProcessId... no
checking for fchmod... yes
checking for setlinebuf... yes
checking for sysconf... yes
checking for times... yes
checking for getrusage... yes
checking for pow... no
checking for sqrt... no
checking for strncasecmp... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) none
checking for g++ option to support OpenMP... -fopenmp
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
+ make -j2
rm -f default_parameters.h
csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h
make  all-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-main.o `test -f 'main.cc' || echo './'`main.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-alea.o `test -f 'alea.cc' || echo './'`alea.cc
main.cc:3490: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
 3490 | #pragma omp parallel for \
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from hybrids.h:40,
                 from main.cc:98:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
main.cc: In function ‘int main(int, const char**)’:
main.cc:480:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  480 | register int i = 0;
      |              ^
main.cc:481:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  481 | register int j = 0;
      |              ^
main.cc:482:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  482 | register int k = 0;
      |              ^
main.cc:484:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 | register int xyz = 0;
      |              ^~~
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from analysis.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
analysis.cc: In function ‘void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)’:
analysis.cc:138:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |     register int   i = 0;
      |                    ^
analysis.cc:139:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |     register int   j = 0;
      |                    ^
analysis.cc:140:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  140 |     register int   k = 0;
      |                    ^
analysis.cc:141:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  141 |     register int   t = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-banner.o `test -f 'banner.cc' || echo './'`banner.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc
bestpdb.cc: In function ‘void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)’:
bestpdb.cc:58:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   58 |     register int  i=0,
      |                   ^
bestpdb.cc:59:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |                   j=0,
      |                   ^
bestpdb.cc:60:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   60 |                   k=0,
      |                   ^
bestpdb.cc:61:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |                   confnum=0;
      |                   ^~~~~~~
bestpdb.cc:123:62: warning: ‘%4d’ directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                              ^~~
bestpdb.cc:123:53: note: directive argument in the range [1, 2147483647]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from bestpdb.cc:33:
In function ‘sprintf’,
    inlined from ‘bestpdb(int, int const*, int const (*) [2000], double const*, double const (*) [2048][3], char const (*) [128], int, int, double const*, int, _IO_FILE*)’ at bestpdb.cc:123:28:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 20 and 26 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cc:1250:89: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=]
 1250 |                     prStr( error_message,"%s:         Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library );
      |                                                                                         ^~                                   ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from /usr/include/c++/15/cstdio:47,
                 from /usr/include/c++/15/ext/string_conversions.h:47,
                 from /usr/include/c++/15/bits/basic_string.h:4227,
                 from /usr/include/c++/15/string:56,
                 from main.cc:71:
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:1250:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 61 or more bytes (assuming 4156) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cc: In function ‘main’:
main.cc:2367:82: warning: ‘%s’ directive writing up to 511 bytes into a region of size 320 [-Wformat-overflow=]
 2367 |                     prStr( error_message,"%s: ERROR:  Unknown ligand atom type \"%s\"; add parameters for it to the parameter library first!\n", programname, param[i]);
      |                                                                                  ^~
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:2367:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 94 or more bytes (assuming 605) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from call_glss.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_glss.cc: In function ‘State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)’:
call_glss.cc:259:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  259 |     register unsigned int i;
      |                           ^
call_glss.cc:260:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  260 |     register int j;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from call_ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_ls.cc: In function ‘Representation** cnv_state_to_rep(const State&)’:
call_ls.cc:50:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   50 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc
In file included from changeState.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
changeState.cc: In function ‘State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)’:
changeState.cc:46:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc
cluster_analysis.cc: In function ‘int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)’:
cluster_analysis.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int compare = 0,
      |                  ^~~~~~~
cluster_analysis.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |                  i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc
In file included from clmode.h:40,
                 from clmode.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc: In function ‘void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)’:
clmode.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register int xyz = 0;
      |                  ^~~
clmode.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int i = 0;
      |                  ^
clmode.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int j = 0;
      |                  ^
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from cnv_state_to_coords.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc:210:28: warning: ‘__strncpy_chk’ output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation]
  210 |                     strncpy( atomstuff[atomCounter], line, (size_t)30 );
      |                            ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-com.o `test -f 'com.cc' || echo './'`com.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc
com.cc:238: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
  238 | #pragma omp critical
In file included from eval.h:38,
                 from support.h:237,
                 from conformation_sampler.h:29,
                 from conformation_sampler.cc:27:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
conformation_sampler.cc: In constructor ‘ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)’:
conformation_sampler.cc:99:10: warning: variable ‘base_q’ set but not used [-Wunused-but-set-variable]
   99 |     Quat base_q = probe_point.readQuat();
      |          ^~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from dimLibrary.cc:6:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
dimLibrary.cc: In function ‘void copyDimension(State*, const Position&)’:
dimLibrary.cc:17:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                      ^
dimLibrary.cc:17:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                         ^
dimLibrary.cc: In function ‘void copyState2Dimension(Position*, const State&)’:
dimLibrary.cc:34:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                      ^
dimLibrary.cc:34:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                         ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc
In file included from stateLibrary.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
stateLibrary.cc: In function ‘void initialiseState(State*)’:
stateLibrary.cc:40:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   40 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void copyState(State*, const State&)’:
stateLibrary.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void printState(FILE*, State, int)’:
stateLibrary.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘int checkState(FILE*, const State*)’:
stateLibrary.cc:199:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  199 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘Molecule copyStateToMolecule(const State*, Molecule*)’:
stateLibrary.cc:251:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  251 |     register int i;
      |                  ^
readfield.cc: In function ‘void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)’:
readfield.cc:49:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   49 |     register int i = 0;
      |                  ^
readfield.cc:83:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   83 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:108:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  108 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:116:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:123:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc
readmap.cc: In function ‘Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)’:
readmap.cc:82:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   82 |     register int xyz = 0;
      |                  ^~~
readmap.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i = 0;
      |                  ^
readmap.cc:84:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   84 |     register int j = 0;
      |                  ^
readmap.cc:85:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   85 |     register int k = 0;
      |                  ^
readPDBQT.cc: In function ‘Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)’:
readPDBQT.cc:138:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |         register int    i = 0;
      |                         ^
readPDBQT.cc:139:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |         register int    j = 0;
      |                         ^
readPDBQT.cc:133:25: warning: variable ‘B_has_conect_records’ set but not used [-Wunused-but-set-variable]
  133 |         Boole           B_has_conect_records = FALSE;
      |                         ^~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc
readPDBQT.cc:370:308: warning: ‘ could not be found;
	check ...’ directive writing 238 bytes into a region of size between 195 and 212 [-Wformat-overflow=]
  370 |                     prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1);
      |                                                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from readPDBQT.cc:33:
In function ‘sprintf’,
    inlined from ‘readPDBQT(char*, int, int*, double (*) [3], double*, int*, int*, int*, char (*) [5], char*, char*, int, char (*) [128], int*, int*, int*, int*, int*, double*, double*, int*, int*, int (*) [2048], double (*) [3], int*, int*, nonbond_param*, long const&, tms const&, char const*, int*, int*, int, char (*) [256], int*, int, int, _IO_FILE*)’ at readPDBQT.cc:370:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 283 or more bytes (assuming 300) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
read_parameter_library.cc: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cc:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-eval.o `test -f 'eval.cc' || echo './'`eval.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc
In file included from eval.h:38,
                 from eval.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.cc: In function ‘void make_state_from_rep(const Representation* const*, State*, int, FILE*)’:
eval.cc:72:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   72 |    register int i;
      |                 ^
eval.cc: In member function ‘double Eval::eval(int)’:
eval.cc:135:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  135 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc
getrms.cc: In function ‘Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)’:
getrms.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                  ^
getrms.cc:48:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                     ^
getrms.cc:48:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                        ^~~
get_atom_type.cc: In function ‘int get_atom_type(const char*)’:
get_atom_type.cc:53:9: warning: variable ‘bond_index’ set but not used [-Wunused-but-set-variable]
   53 |     int bond_index = -1;
      |         ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc
In file included from getInitialState.h:31,
                 from getInitialState.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
getInitialState.cc: In function ‘void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)’:
getInitialState.cc:111:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  111 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-gs.o `test -f 'gs.cc' || echo './'`gs.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc
In file included from initautodock.h:31,
                 from initautodock.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
initautodock.cc: In function ‘void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)’:
initautodock.cc:76:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   76 |     register int   xyz = 0;
      |                    ^~~
initautodock.cc:77:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |     register int   i = 0;
      |                    ^
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from gs.cc:42:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
gs.cc: In function ‘double worst_in_window(const double*, int, int, FILE*)’:
gs.cc:73:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   73 |    register int i;
      |                 ^
gs.cc: In function ‘double avg_in_window(const double*, int, FILE*)’:
gs.cc:107:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  107 |    register int i;
      |                 ^
gs.cc: In member function ‘double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)’:
gs.cc:130:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  130 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)’:
gs.cc:287:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                 ^
gs.cc:287:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                    ^
gs.cc: In member function ‘void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)’:
gs.cc:396:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  396 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::crossover(Population&, int, FILE*)’:
gs.cc:596:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  596 |    register unsigned int i;
      |                          ^
In file included from constants.h:28,
                 from structs.h:30,
                 from rep.h:45,
                 from support.h:236:
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:641:10: note: in expansion of macro ‘assertQuatOK’
  641 |          assertQuatOK( q_father );
      |          ^~~~~~~~~~~~
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:652:10: note: in expansion of macro ‘assertQuatOK’
  652 |          assertQuatOK( q_mother );
      |          ^~~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)’:
gs.cc:877:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  877 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)’:
gs.cc:983:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                          ^
gs.cc:983:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                               ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)’:
gs.cc:1262:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1262:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)’:
gs.cc:1327:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1327:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)’:
gs.cc:1420:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1420 |    register unsigned int i;
      |                          ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc
In file included from input_state.h:30,
                 from input_state.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
input_state.cc: In function ‘int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)’:
input_state.cc:70:25: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |             (void) fgets(myline, LINELEN, fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from investigate.h:33,
                 from investigate.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
investigate.cc: In function ‘void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)’:
investigate.cc:103:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  103 |     register int Test = -1;
      |                  ^~~~
investigate.cc:106:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  106 |     register int i = 0;
      |                  ^
investigate.cc:120:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  120 |     register int NumOutside = 0;
      |                  ^~~~~~~~~~
investigate.cc:121:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  121 |     register int LocalTest = 0;
      |                  ^~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-ls.o `test -f 'ls.cc' || echo './'`ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
ls.cc: In function ‘Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)’:
ls.cc:46:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                          ^
ls.cc:46:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                             ^~~~~
ls.cc: In member function ‘virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:88:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                          ^
ls.cc:88:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                             ^
ls.cc:88:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                ^~~~~~~~~~~~~
ls.cc:88:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                                   ^~~~~~~~~~~~
ls.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |    register Real temp_rho = rho;
      |                  ^~~~~~~~
ls.cc:92:9: warning: unused variable ‘thisQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |         ^~~~~~~~
ls.cc:92:19: warning: unused variable ‘prevQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                   ^~~~~~~~
ls.cc:92:29: warning: unused variable ‘startQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                             ^~~~~~~~~
ls.cc: In member function ‘virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:248:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                          ^
ls.cc:248:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                             ^
ls.cc:248:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                ^~~~~~~~~~~~~
ls.cc:248:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                   ^~~~~~~~~~~~
ls.cc:248:70: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from eval.h:38,
                 from support.h:237,
                 from mapping.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc
In file included from eval.h:38,
                 from support.h:237,
                 from minmeanmax.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
minmeanmax.cc: In function ‘void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)’:
minmeanmax.cc:51:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                 ^
minmeanmax.cc:51:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                      ^
minmeanmax.cc:51:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                           ^
minmeanmax.cc:56:76: warning: variable ‘best’ set but not used [-Wunused-but-set-variable]
   56 |    double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ];
      |                                                                            ^~~~
In file included from mkNewState.h:31,
                 from mkNewState.cc:33:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
mkNewState.cc: In function ‘void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)’:
mkNewState.cc:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   56 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc
mkTorTree.cc: In function ‘void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)’:
mkTorTree.cc:88:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int   i = 0;
      |                    ^
mkTorTree.cc:89:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int   j = 0;
      |                    ^
mkTorTree.cc:90:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int   k = 0;
      |                    ^
mkTorTree.cc: At global scope:
mkTorTree.cc:456:5: warning: ‘int check_atomnumber(int, const int*, int, int, FILE*)’ defined but not used [-Wunused-function]
  456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord,
      |     ^~~~~~~~~~~~~~~~
mkRandomState.cc: In function ‘State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)’:
mkRandomState.cc:44:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   44 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc
In file included from nonbonds.cc:35:
mdist.h: In function ‘void mdist()’:
mdist.h:45:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                      ^
mdist.h:45:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                        ^
mdist.h:32:25: warning: operation on ‘mindist[0][0]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[0][0]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[1][1]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[1][1]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[2][2]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[2][2]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[3][3]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[3][3]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[4][4]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[4][4]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[5][5]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[5][5]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[6][6]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[6][6]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
nonbonds.cc: In function ‘void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)’:
nonbonds.cc:250:13: warning: ‘?:’ using integer constants in boolean context [-Wint-in-bool-context]
  248 |         for (int j=0; j<
      |                       ~~
  249 |             B_print_all_bonds
      |             ~~~~~~~~~~~~~~~~~
  250 |             ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  251 |             : nbonds[i]; // loop over this atom's "j" bonds
      |             ~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from writePDBQT.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from prInitialState.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
prInitialState.cc: In function ‘void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)’:
prInitialState.cc:59:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |     register int i = 0;
      |                  ^
prClusterHist.cc: In function ‘void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)’:
prClusterHist.cc:51:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |     register int  Rank=0,
      |                   ^~~~
prClusterHist.cc:52:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |                   j=0;
      |                   ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-pso.o `test -f 'pso.cc' || echo './'`pso.cc
prTorConList.cc: In function ‘void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)’:
prTorConList.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from pso.cc:1:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
In file included from qmultiply.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.cc:42:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   42 |                 register const Quat *const ql,   //left
      |                                            ^~
qmultiply.cc:43:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   43 |                 register const Quat *const qr )  //right
      |                                            ^~
qmultiply.cc: In function ‘void qmultiply(Quat*, const Quat*, const Quat*)’:
qmultiply.cc:66:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                     ^
qmultiply.cc:66:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                       ^
qmultiply.cc:66:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                         ^
qmultiply.cc:66:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                           ^
qmultiply.cc: In function ‘AxisAngle QuatToAxisAngle(const Quat&)’:
qmultiply.cc:224:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  224 |         register double angle = 2. * acos( input.w );
      |                         ^~~~~
qmultiply.cc: In function ‘Quat inverse(const Quat&)’:
qmultiply.cc:356:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                   ^~~~
qmultiply.cc:356:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                         ^~~
qmultiply.cc:357:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  357 |     register double inv_squared_magnitude;
      |                     ^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc
In file included from qtransform.h:35,
                 from qtransform.cc:32:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qtransform.cc: In function ‘void qtransform(const Coord&, const Quat&, Real (*)[3], int)’:
qtransform.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int a;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-rep.o `test -f 'rep.cc' || echo './'`rep.cc
rep.cc: In constructor ‘IntVector::IntVector(int)’:
rep.cc:77:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |    register int i;
      |                 ^
rep.cc: In constructor ‘IntVector::IntVector(int, int, int)’:
rep.cc:95:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   95 |    register int i;
      |                 ^
rep.cc: In copy constructor ‘IntVector::IntVector(const IntVector&)’:
rep.cc:129:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  129 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& IntVector::operator=(const Representation&)’:
rep.cc:237:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  237 |    register unsigned int i;
      |                          ^
rep.cc: In constructor ‘RealVector::RealVector(int, const double&, const double&, const double&)’:
rep.cc:329:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  329 |    register int i=0;
      |                 ^
rep.cc: In copy constructor ‘RealVector::RealVector(const RealVector&)’:
rep.cc:428:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& RealVector::operator=(const Representation&)’:
rep.cc:553:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  553 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘ConstrainedRealVector::ConstrainedRealVector(const ConstrainedRealVector&)’:
rep.cc:641:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  641 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘void ConstrainedRealVector::normalize()’:
rep.cc:753:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  753 |       register unsigned int i;
      |                             ^
rep.cc:754:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                       ^~~~~~~
rep.cc:754:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                                      ^~~~~~~~~~
rep.cc: In member function ‘virtual Representation& ConstrainedRealVector::operator=(const Representation&)’:
rep.cc:812:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  812 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘BitVector::BitVector(const BitVector&)’:
rep.cc:900:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  900 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& BitVector::operator=(const Representation&)’:
rep.cc:994:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  994 |    register unsigned int i;
      |                          ^
ranlib.cc: In function ‘ignpoi(double const&)’:
ranlib.cc:1144:21: warning: ‘m’ may be used uninitialized [-Wmaybe-uninitialized]
 1144 |     if(u > 0.458) j = IMIN(l,m);
      |                   ~~^~~~~~~~~~~
ranlib.cc:995:33: note: ‘m’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                                 ^
ranlib.cc:1136:5: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
 1136 |     if(u <= p0) return ignpoi;
      |     ^~
ranlib.cc:996:58: note: ‘p’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                          ^
ranlib.cc:1023:5: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     if(ignpoi >= l) return ignpoi;
      |     ^~
ranlib.cc:995:31: note: ‘l’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                               ^
ranlib.cc:1030:9: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized]
 1030 |     if(d*u >= difmuk*difmuk*difmuk) return ignpoi;
      |        ~^~
ranlib.cc:996:26: note: ‘d’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                          ^
ranlib.cc:1017:7: warning: ‘s’ may be used uninitialized [-Wmaybe-uninitialized]
 1017 |     g = mu+s*snorm();
      |     ~~^~~~~~~~~~~~~~
ranlib.cc:996:71: note: ‘s’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                                       ^
ranlib.cc:1092:5: warning: ‘ignpoi’ may be used uninitialized [-Wmaybe-uninitialized]
 1092 |     if(ignpoi >= 10) goto S80;
      |     ^~
ranlib.cc:995:14: note: ‘ignpoi’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |              ^~~~~~
ranlib.cc:1104:7: warning: ‘difmuk’ may be used uninitialized [-Wmaybe-uninitialized]
 1104 |     v = difmuk/fk;
      |     ~~^~~~~~~~~~~
ranlib.cc:996:32: note: ‘difmuk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                ^~~~~~
ranlib.cc:1102:9: warning: ‘fk’ may be used uninitialized [-Wmaybe-uninitialized]
 1102 |     del = 8.333333E-2/fk;
      |     ~~~~^~~~~~~~~~~~~~~~
ranlib.cc:996:41: note: ‘fk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                         ^~
ranlib.cc:1116:38: warning: ‘c0’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~
ranlib.cc:996:14: note: ‘c0’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |              ^~
ranlib.cc:1116:31: warning: ‘c1’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                 ~~~~~~~~~~~~~~^~~~
ranlib.cc:996:17: note: ‘c1’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                 ^~
ranlib.cc:1116:24: warning: ‘c2’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:20: note: ‘c2’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                    ^~
ranlib.cc:1116:24: warning: ‘c3’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:23: note: ‘c3’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                       ^~
ranlib.cc:1116:8: warning: ‘omega’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ranlib.cc:996:52: note: ‘omega’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                    ^~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc
scauchy.cc: In function ‘Real scauchy2()’:
scauchy.cc:81:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |               ^
scauchy.cc:81:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                  ^
scauchy.cc:81:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                     ^~
scauchy.cc:81:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                         ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc
In file included from getInitialState.h:31,
                 from simanneal.h:33,
                 from simanneal.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
setflags.cc: In function ‘setflags(int, char const**, char const*)’:
setflags.cc:293:20: warning: ‘__strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                    ^
setflags.cc:293:55: note: length computed here
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                                                 ~~~~~~^~~~~~~~~~~~~~~
simanneal.cc: In function ‘void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)’:
simanneal.cc:188:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  188 |     register int i = 0;
      |                  ^
simanneal.cc:189:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  189 |     register int nacc = 0;
      |                  ^~~~
simanneal.cc:190:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  190 |     register int nAcc = 0;
      |                  ^~~~
simanneal.cc:191:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  191 |     register int nAccProb = 0;
      |                  ^~~~~~~~
simanneal.cc:192:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  192 |     register int nedge = 0;
      |                  ^~~~~
simanneal.cc:193:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  193 |     register int nrej = 0;
      |                  ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-stack.o `test -f 'stack.cc' || echo './'`stack.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-stop.o `test -f 'stop.cc' || echo './'`stop.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc
strindex.cc: In function ‘int strindex(const char*, const char*)’:
strindex.cc:54:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                  ^
strindex.cc:54:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                    ^~
strindex.cc:54:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                       ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-success.o `test -f 'success.cc' || echo './'`success.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-support.o `test -f 'support.cc' || echo './'`support.cc
In file included from eval.h:38,
                 from support.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
support.cc: In copy constructor ‘Population::Population(const Population&)’:
support.cc:52:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::msort(int)’:
support.cc:147:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  147 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::print(FILE*, int) const’:
support.cc:187:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  187 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsStates(FILE*, int, int) const’:
support.cc:348:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  348 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const’:
support.cc:388:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  388 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::set_eob(int*)’:
support.cc:433:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  433 |    for (register int i=0; i<MAX_TORS; i++) {
      |                      ^
support.cc: In constructor ‘Genotype::Genotype(unsigned int, Representation**)’:
support.cc:456:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                          ^
support.cc:456:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                             ^
support.cc:456:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Genotype::Genotype(const Genotype&)’:
support.cc:484:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Genotype::~Genotype()’:
support.cc:512:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  512 |    register unsigned int i;
      |                          ^
support.cc: In constructor ‘Phenotype::Phenotype(unsigned int, Representation**, Eval*)’:
support.cc:674:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                          ^
support.cc:674:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                             ^
support.cc:674:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Phenotype::Phenotype(const Phenotype&)’:
support.cc:700:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  700 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Phenotype& Phenotype::operator=(const Phenotype&)’:
support.cc:731:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  731 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Phenotype::~Phenotype()’:
support.cc:781:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  781 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Population& Population::operator=(const Population&)’:
support.cc:968:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  968 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-swap.o `test -f 'swap.cc' || echo './'`swap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc
threadlog.cc:72: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
   72 | #pragma omp critical
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc
torNorVec.cc: In function ‘void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)’:
torNorVec.cc:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   47 |     register int xyz = 0;
      |                  ^~~
torNorVec.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int j = 0;
      |                  ^
torNorVec.cc: In function ‘void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)’:
torNorVec.cc:104:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc
torNorVec.cc:104:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                       ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc
torsion.cc: In function ‘void torsion(const State&, Real (*)[3], const Real (*)[3], const int (*)[2048], int)’:
torsion.cc:62:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register double crdtemp[SPACE];
      |                     ^~~~~~~
torsion.cc:63:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   63 |     register double  d[SPACE];
      |                      ^
torsion.cc:64:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register double sv[SPACE];
      |                     ^~
torsion.cc:65:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register double ov[SPACE];
      |                     ^~
torsion.cc:66:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double  k[SPACE][SPACE];
      |                      ^
torsion.cc:67:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                     ^
torsion.cc:67:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                        ^
torsion.cc:67:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                           ^
torsion.cc:67:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                              ^~~
torsion.cc:67:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                                   ^~~~~~~~
torsion.cc:68:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                  ^
torsion.cc:68:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                     ^
torsion.cc:68:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                        ^~~~~
torsion.cc:68:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                               ^~~~~~
torsion.cc:68:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                                       ^~~~~~~~~~~
trilinterp.cc: In function ‘Real trilinterp(int, int, const Real (*)[3], const Real*, const Real*, const int*, MapType*, const GridMapSetInfo*, const int*, EnergyComponent*, EnergyComponent*, EnergyComponent*)’:
trilinterp.cc:88:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int i;               /* i-th atom */
      |                  ^
trilinterp.cc:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                         ^
trilinterp.cc:92:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                            ^
trilinterp.cc:92:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                               ^
trilinterp.cc:93:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                         ^
trilinterp.cc:93:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                              ^
trilinterp.cc:93:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                                   ^
trilinterp.cc:96:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   96 |         register int AtomType;        /* atom type */
      |                      ^~~~~~~~
trilinterp.cc:97:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                      ^~
trilinterp.cc:97:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                           ^~
trilinterp.cc:97:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                                ^~
trilinterp.cc:98:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                                ^~
trilinterp.cc:99:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                         ^
trilinterp.cc:99:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                           ^
trilinterp.cc:99:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                             ^
trilinterp.cc:98:22: warning: variable ‘u1’ set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: variable ‘v1’ set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: variable ‘w1’ set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                                ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-usage.o `test -f 'usage.cc' || echo './'`usage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc
weedbonds.cc: In function ‘void weedbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int*, NonbondParam*, int*, int, const int*, int, int, FILE*)’:
weedbonds.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int i = 0;
      |                  ^
weedbonds.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int j = 0;
      |                  ^
weedbonds.cc:67:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register int k = 0;
      |                  ^
weedbonds.cc: In function ‘void print_nonbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int, const NonbondParam*, const int*, int, FILE*)’:
weedbonds.cc:252:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  252 |     register int i = 0;
      |                  ^
weedbonds.cc:253:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  253 |     register int j = 0;
      |                  ^
weedbonds.cc:254:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  254 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc
eintcal.cc: In function ‘Real eintcal(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, FILE*)’:
eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc
In file included from eintcalPrint.cc:29:
./eintcal.cc: In function ‘Real eintcalPrint(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, const int*, const char (*)[3], int, FILE*)’:
./eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
intnbtable.cc: In function ‘void intnbtable(Boole*, int, int, const GridMapSetInfo*, const Real&, const Real&, int, int, Boole, const Real&, Linear_FE_Model, const double&, EnergyTables*, Boole, FILE*, int)’:
intnbtable.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i;
      |                  ^
intnbtable.cc: In function ‘void setup_distdepdiel(FILE*, int, EnergyTables*)’:
intnbtable.cc:268:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  268 |     register int i=0;
      |                  ^
intnbtable.cc:269:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  269 |     register double distance=0.0L;
      |                     ^~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc
nbe.cc: In function ‘void nbe(const GridMapSetInfo*, const EnergyTables*, int, int, FILE*)’:
nbe.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
nbe.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int j = 0;
      |                  ^
nbe.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-main.o `test -f 'main.cc' || echo './'`main.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-alea.o `test -f 'alea.cc' || echo './'`alea.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-analysis.o `test -f 'analysis.cc' || echo './'`analysis.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from analysis.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
analysis.cc: In function ‘void analysis(int, int*, GroupEnergy*, int, const char (*)[128], const Real*, const Real*, const Real*, Boole, const Real&, const Real (*)[3], const EnergyTables*, MapType*, const Real*, int, int, const NonbondParam*, int, int, State*, const char*, const Real*, Boole, Boole, const int (*)[2048], const int*, const Real (*)[3], const char*, const Real&, Boole, int, const int*, Boole, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Boole, Unbound_Model, Boole, int, int, FILE*)’:
analysis.cc:138:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |     register int   i = 0;
      |                    ^
analysis.cc:139:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |     register int   j = 0;
      |                    ^
analysis.cc:140:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  140 |     register int   k = 0;
      |                    ^
analysis.cc:141:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  141 |     register int   t = 0;
      |                    ^
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from hybrids.h:40,
                 from main.cc:98:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
main.cc: In function ‘int main(int, const char**)’:
main.cc:480:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  480 | register int i = 0;
      |              ^
main.cc:481:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  481 | register int j = 0;
      |              ^
main.cc:482:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  482 | register int k = 0;
      |              ^
main.cc:484:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 | register int xyz = 0;
      |              ^~~
main.cc:3282:21: warning: unused variable ‘thread_num’ [-Wunused-variable]
 3282 |                 int thread_num=omp_get_thread_num();
      |                     ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-atom_parameter_manager.o `test -f 'atom_parameter_manager.cc' || echo './'`atom_parameter_manager.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-banner.o `test -f 'banner.cc' || echo './'`banner.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-bestpdb.o `test -f 'bestpdb.cc' || echo './'`bestpdb.cc
bestpdb.cc: In function ‘void bestpdb(int, const int*, const int (*)[2000], const Real*, const Real (*)[2048][3], const char (*)[128], int, Boole, const Real*, int, FILE*)’:
bestpdb.cc:58:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   58 |     register int  i=0,
      |                   ^
bestpdb.cc:59:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |                   j=0,
      |                   ^
bestpdb.cc:60:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   60 |                   k=0,
      |                   ^
bestpdb.cc:61:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |                   confnum=0;
      |                   ^~~~~~~
bestpdb.cc:123:62: warning: ‘%4d’ directive writing between 4 and 10 bytes into a region of size 9 [-Wformat-overflow=]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                              ^~~
bestpdb.cc:123:53: note: directive argument in the range [1, 2147483647]
  123 |                     sprintf(AtmNamResNamNumInsCode, "%-11.11s%4d%-4.4s", &atomstuff[j][11],
      |                                                     ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from bestpdb.cc:33:
In function ‘sprintf’,
    inlined from ‘bestpdb(int, int const*, int const (*) [2000], double const*, double const (*) [2048][3], char const (*) [128], int, int, double const*, int, _IO_FILE*)’ at bestpdb.cc:123:28:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output between 20 and 26 bytes into a destination of size 20
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-calculateEnergies.o `test -f 'calculateEnergies.cc' || echo './'`calculateEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-call_glss.o `test -f 'call_glss.cc' || echo './'`call_glss.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from call_glss.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_glss.cc: In function ‘State call_glss(Global_Search*, Local_Search*, const State&, unsigned int, unsigned int, int, FILE*, const Output_pop_stats&, Molecule*, Eval*, Boole, Boole, Boole, const GridMapSetInfo*, const char*, int*)’:
call_glss.cc:259:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  259 |     register unsigned int i;
      |                           ^
call_glss.cc:260:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  260 |     register int j;
      |                  ^
main.cc:1250:89: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 313 [-Wformat-overflow=]
 1250 |                     prStr( error_message,"%s:         Edit the parameter library file \"%s\" and try again.\n", programname, FN_parameter_library );
      |                                                                                         ^~                                   ~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from /usr/include/c++/15/cstdio:47,
                 from /usr/include/c++/15/ext/string_conversions.h:47,
                 from /usr/include/c++/15/bits/basic_string.h:4227,
                 from /usr/include/c++/15/string:56,
                 from main.cc:71:
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:1250:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 61 or more bytes (assuming 4156) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
main.cc: In function ‘main’:
main.cc:2367:82: warning: ‘%s’ directive writing up to 511 bytes into a region of size 320 [-Wformat-overflow=]
 2367 |                     prStr( error_message,"%s: ERROR:  Unknown ligand atom type \"%s\"; add parameters for it to the parameter library first!\n", programname, param[i]);
      |                                                                                  ^~
In function ‘sprintf’,
    inlined from ‘main’ at main.cc:2367:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 94 or more bytes (assuming 605) into a destination of size 356
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-call_ls.o `test -f 'call_ls.cc' || echo './'`call_ls.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from call_ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
call_ls.cc: In function ‘Representation** cnv_state_to_rep(const State&)’:
call_ls.cc:50:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   50 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-center_ligand.o `test -f 'center_ligand.cc' || echo './'`center_ligand.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-changeState.o `test -f 'changeState.cc' || echo './'`changeState.cc
In file included from changeState.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
changeState.cc: In function ‘State changeState(const State&, const Real&, const Real&, int, const Real (*)[8][2], const int*)’:
changeState.cc:46:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-check_header_float.o `test -f 'check_header_float.cc' || echo './'`check_header_float.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-check_header_int.o `test -f 'check_header_int.cc' || echo './'`check_header_int.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-check_header_line.o `test -f 'check_header_line.cc' || echo './'`check_header_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-cluster_analysis.o `test -f 'cluster_analysis.cc' || echo './'`cluster_analysis.cc
cluster_analysis.cc: In function ‘int cluster_analysis(const Real&, int (*)[2000], int*, const int*, int, int, const int*, const Real (*)[2048][3], const Real (*)[3], const Real*, Real (*)[2000], Boole, Boole, Real (*)[3], int, Real*, Boole, int)’:
cluster_analysis.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int compare = 0,
      |                  ^~~~~~~
cluster_analysis.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |                  i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-clmode.o `test -f 'clmode.cc' || echo './'`clmode.cc
In file included from clmode.h:40,
                 from clmode.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
clmode.cc: In function ‘void clmode(int, const Real&, const char*, const clock_t&, const tms&, Boole, const char*, const Real (*)[3], const Real*, Boole, Boole, const char*, Boole, int, int, FILE*)’:
clmode.cc:62:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register int xyz = 0;
      |                  ^~~
clmode.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int i = 0;
      |                  ^
clmode.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int j = 0;
      |                  ^
clmode.cc:210:28: warning: ‘__strncpy_chk’ output may be truncated copying 30 bytes from a string of length 255 [-Wstringop-truncation]
  210 |                     strncpy( atomstuff[atomCounter], line, (size_t)30 );
      |                            ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-cnv_state_to_coords.o `test -f 'cnv_state_to_coords.cc' || echo './'`cnv_state_to_coords.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from cnv_state_to_coords.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-com.o `test -f 'com.cc' || echo './'`com.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-conformation_sampler.o `test -f 'conformation_sampler.cc' || echo './'`conformation_sampler.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-dimLibrary.o `test -f 'dimLibrary.cc' || echo './'`dimLibrary.cc
In file included from eval.h:38,
                 from support.h:237,
                 from conformation_sampler.h:29,
                 from conformation_sampler.cc:27:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
conformation_sampler.cc: In constructor ‘ConformationSampler::ConformationSampler(const State&, int, Eval*, int, FILE*)’:
conformation_sampler.cc:99:10: warning: variable ‘base_q’ set but not used [-Wunused-but-set-variable]
   99 |     Quat base_q = probe_point.readQuat();
      |          ^~~~~~
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from dimLibrary.cc:6:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
dimLibrary.cc: In function ‘void copyDimension(State*, const Position&)’:
dimLibrary.cc:17:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                      ^
dimLibrary.cc:17:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   17 |         register int i, j;
      |                         ^
dimLibrary.cc: In function ‘void copyState2Dimension(Position*, const State&)’:
dimLibrary.cc:34:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                      ^
dimLibrary.cc:34:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   34 |         register int i, j;
      |                         ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-distdepdiel.o `test -f 'distdepdiel.cc' || echo './'`distdepdiel.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-stateLibrary.o `test -f 'stateLibrary.cc' || echo './'`stateLibrary.cc
In file included from stateLibrary.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
stateLibrary.cc: In function ‘void initialiseState(State*)’:
stateLibrary.cc:40:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   40 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void copyState(State*, const State&)’:
stateLibrary.cc:61:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   61 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘void printState(FILE*, State, int)’:
stateLibrary.cc:90:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘int checkState(FILE*, const State*)’:
stateLibrary.cc:199:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  199 |     register int i;
      |                  ^
stateLibrary.cc: In function ‘Molecule copyStateToMolecule(const State*, Molecule*)’:
stateLibrary.cc:251:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  251 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-readfield.o `test -f 'readfield.cc' || echo './'`readfield.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-readmap.o `test -f 'readmap.cc' || echo './'`readmap.cc
readfield.cc: In function ‘void readfield(GridMapSetInfo*, char*, const clock_t&, const tms&, int, FILE*)’:
readfield.cc:49:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   49 |     register int i = 0;
      |                  ^
readfield.cc:83:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   83 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:108:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  108 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:116:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  116 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readfield.cc:123:17: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  123 |     (void) fgets(inputline, LINE_LEN, fldFile);
      |            ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-readPDBQT.o `test -f 'readPDBQT.cc' || echo './'`readPDBQT.cc
readmap.cc: In function ‘Statistics readmap(char*, int, const clock_t&, const tms&, Boole, Boole*, int, const GridMapSetInfo*, MapType*, char, FILE*)’:
readmap.cc:82:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   82 |     register int xyz = 0;
      |                  ^~~
readmap.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i = 0;
      |                  ^
readmap.cc:84:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   84 |     register int j = 0;
      |                  ^
readmap.cc:85:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   85 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-read_parameter_library.o `test -f 'read_parameter_library.cc' || echo './'`read_parameter_library.cc
readPDBQT.cc: In function ‘Molecule readPDBQT(char*, int, int*, Real (*)[3], Real*, Boole*, int*, int*, char (*)[5], char*, char*, Boole, char (*)[128], int*, int*, Boole*, int*, int*, Real*, Real*, int*, int*, int (*)[2048], Real (*)[3], int*, int*, NonbondParam*, const clock_t&, const tms&, const char*, int*, int*, int, char (*)[256], int*, int, int, FILE*)’:
readPDBQT.cc:138:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  138 |         register int    i = 0;
      |                         ^
readPDBQT.cc:139:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  139 |         register int    j = 0;
      |                         ^
readPDBQT.cc:133:25: warning: variable ‘B_has_conect_records’ set but not used [-Wunused-but-set-variable]
  133 |         Boole           B_has_conect_records = FALSE;
      |                         ^~~~~~~~~~~~~~~~~~~~
read_parameter_library.cc: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cc:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
readPDBQT.cc:370:308: warning: ‘ could not be found;
	check ...’ directive writing 238 bytes into a region of size between 195 and 212 [-Wformat-overflow=]
  370 |                     prStr(message, "%s: WARNING: the atom type (%s) of atom number %d could not be found;\n\tcheck that this atom type is listed after the \"ligand_types\" keyword in the DPF,\n\tand make sure to add a \"map\" keyword to the DPF for this atom type.\n\tNote that AutoDock will use the default atom type = 1, instead.\n\n", programname, this_parameter_entry.autogrid_type, natom+1);
      |                                                                                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from readPDBQT.cc:33:
In function ‘sprintf’,
    inlined from ‘readPDBQT(char*, int, int*, double (*) [3], double*, int*, int*, int*, char (*) [5], char*, char*, int, char (*) [128], int*, int*, int*, int*, int*, double*, double*, int*, int*, int (*) [2048], double (*) [3], int*, int*, nonbond_param*, long const&, tms const&, char const*, int*, int*, int, char (*) [256], int*, int, int, _IO_FILE*)’ at readPDBQT.cc:370:26:
/usr/include/bits/stdio2.h:30:34: note: ‘__sprintf_chk’ output 283 or more bytes (assuming 300) into a destination of size 256
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-eval.o `test -f 'eval.cc' || echo './'`eval.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-gencau.o `test -f 'gencau.cc' || echo './'`gencau.cc
In file included from eval.h:38,
                 from eval.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
eval.cc: In function ‘void make_state_from_rep(const Representation* const*, State*, int, FILE*)’:
eval.cc:72:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   72 |    register int i;
      |                 ^
eval.cc: In member function ‘double Eval::eval(int)’:
eval.cc:135:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  135 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-getrms.o `test -f 'getrms.cc' || echo './'`getrms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-get_atom_type.o `test -f 'get_atom_type.cc' || echo './'`get_atom_type.cc
getrms.cc: In function ‘Real getrms(const Real (*)[3], const Real (*)[3], Boole, Boole, int, const int*, Boole, int)’:
getrms.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                  ^
getrms.cc:48:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                     ^
getrms.cc:48:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int i, j, xyz;
      |                        ^~~
get_atom_type.cc: In function ‘int get_atom_type(const char*)’:
get_atom_type.cc:53:9: warning: variable ‘bond_index’ set but not used [-Wunused-but-set-variable]
   53 |     int bond_index = -1;
      |         ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-getInitialState.o `test -f 'getInitialState.cc' || echo './'`getInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-getpdbcrds.o `test -f 'getpdbcrds.cc' || echo './'`getpdbcrds.cc
In file included from getInitialState.h:31,
                 from getInitialState.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
getInitialState.cc: In function ‘void getInitialState(Real*, const Real&, State*, State*, State*, Boole, Boole, Boole, const Real*, const Real*, const Real*, Real (*)[3], const Real (*)[3], const char (*)[128], EnergyComponent*, const EnergyTables*, Boole, MapType*, int, int, int*, GroupEnergy*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], int, int, const Real&, int, const int*, Boole, const Real&, const Real&, const Real&, const GridMapSetInfo*, Boole, Boole, Unbound_Model, int, FILE*)’:
getInitialState.cc:111:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  111 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-gs.o `test -f 'gs.cc' || echo './'`gs.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-initautodock.o `test -f 'initautodock.cc' || echo './'`initautodock.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from gs.cc:42:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
gs.cc: In function ‘double worst_in_window(const double*, int, int, FILE*)’:
gs.cc:73:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   73 |    register int i;
      |                 ^
gs.cc: In function ‘double avg_in_window(const double*, int, FILE*)’:
gs.cc:107:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  107 |    register int i;
      |                 ^
gs.cc: In member function ‘double Genetic_Algorithm::worst_this_generation(const Population&, int, FILE*)’:
gs.cc:130:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  130 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::make_table(int, const Real&, int, FILE*)’:
gs.cc:287:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                 ^
gs.cc:287:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  287 |    register int i, j;
      |                    ^
gs.cc: In member function ‘void Genetic_Algorithm::initialize(unsigned int, unsigned int, int, FILE*)’:
gs.cc:396:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  396 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::crossover(Population&, int, FILE*)’:
gs.cc:596:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  596 |    register unsigned int i;
      |                          ^
In file included from constants.h:28,
                 from structs.h:30,
                 from rep.h:45,
                 from support.h:236:
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:641:10: note: in expansion of macro ‘assertQuatOK’
  641 |          assertQuatOK( q_father );
      |          ^~~~~~~~~~~~
autocomm.h:166:60: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  166 | #define assertQuatOK( q ) {fflush(logFile);register double aQOK_mag4 = hypotenuse4( (q).x, (q).y, (q).z, (q).w ); assert((aQOK_mag4 > ONE_MINUS_EPSILON) && (aQOK_mag4 < ONE_PLUS_EPSILON)); }
      |                                                            ^~~~~~~~~
gs.cc:652:10: note: in expansion of macro ‘assertQuatOK’
  652 |          assertQuatOK( q_mother );
      |          ^~~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::crossover_arithmetic(Genotype&, Genotype&, const Real&, int, FILE*)’:
gs.cc:877:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  877 |    register unsigned int i;
      |                          ^
gs.cc: In member function ‘void Genetic_Algorithm::selection_proportional(Population&, Individual*, int, FILE*)’:
gs.cc:983:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                          ^
gs.cc:983:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  983 |    register unsigned int i=0, start_index = 0;
      |                               ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_tournament(Population&, Individual*, int, FILE*)’:
gs.cc:1262:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1262:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1262 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘void Genetic_Algorithm::selection_linear_ranking(Population&, Individual*, int, FILE*)’:
gs.cc:1327:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                          ^
gs.cc:1327:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1327 |    register unsigned int i = 0, start_index = 0;
      |                                 ^~~~~~~~~~~
gs.cc: In member function ‘virtual int Genetic_Algorithm::search(Population&, Eval*, int, FILE*)’:
gs.cc:1420:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
 1420 |    register unsigned int i;
      |                          ^
In file included from initautodock.h:31,
                 from initautodock.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
initautodock.cc: In function ‘void initautodock(const char (*)[128], Real (*)[3], const Real (*)[3], int, int, State*, const int (*)[2048], const Real (*)[3], int, int, const GridMapSetInfo*)’:
initautodock.cc:76:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   76 |     register int   xyz = 0;
      |                    ^~~
initautodock.cc:77:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |     register int   i = 0;
      |                    ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-input_state.o `test -f 'input_state.cc' || echo './'`input_state.cc
In file included from input_state.h:30,
                 from input_state.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
input_state.cc: In function ‘int input_state(State*, FILE*, const char*, int, int*, Real*, Real*, char*)’:
input_state.cc:70:25: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   70 |             (void) fgets(myline, LINELEN, fp);
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-investigate.o `test -f 'investigate.cc' || echo './'`investigate.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-linpack.o `test -f 'linpack.cc' || echo './'`linpack.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from investigate.h:33,
                 from investigate.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
investigate.cc: In function ‘void investigate(int, int*, GroupEnergy*, const Real*, const Real*, const Real*, Boole, Real (*)[3], const Real (*)[3], const EnergyTables*, int, MapType*, int, const NonbondParam*, int, const int (*)[2048], const int*, const Real (*)[3], Boole, const short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, Real (*)[8][2], int*, Boole, Boole, const char*, int, int, const Real&, const Real&, const int*, Boole, const Real&, const Real&, const Real&, GridMapSetInfo*, Boole, Boole, Boole, int, int, int, FILE*)’:
investigate.cc:103:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  103 |     register int Test = -1;
      |                  ^~~~
investigate.cc:106:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  106 |     register int i = 0;
      |                  ^
investigate.cc:120:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  120 |     register int NumOutside = 0;
      |                  ^~~~~~~~~~
investigate.cc:121:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  121 |     register int LocalTest = 0;
      |                  ^~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-ls.o `test -f 'ls.cc' || echo './'`ls.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-mapping.o `test -f 'mapping.cc' || echo './'`mapping.cc
In file included from eval.h:38,
                 from support.h:237,
                 from ls.h:40,
                 from ls.cc:40:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
ls.cc: In function ‘Phenotype genPh(const Phenotype&, const Real&, const Real*, Real*, int, FILE*)’:
ls.cc:46:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                          ^
ls.cc:46:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   46 |    register unsigned int i, index = 0;
      |                             ^~~~~
ls.cc: In member function ‘virtual Boole Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:88:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                          ^
ls.cc:88:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                             ^
ls.cc:88:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                ^~~~~~~~~~~~~
ls.cc:88:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |    register unsigned int i, j, num_successes = 0, num_failures = 0;
      |                                                   ^~~~~~~~~~~~
ls.cc:89:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |    register Real temp_rho = rho;
      |                  ^~~~~~~~
ls.cc:92:9: warning: unused variable ‘thisQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |         ^~~~~~~~
ls.cc:92:19: warning: unused variable ‘prevQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                   ^~~~~~~~
ls.cc:92:29: warning: unused variable ‘startQuat’ [-Wunused-variable]
   92 |    Quat thisQuat, prevQuat, startQuat;
      |                             ^~~~~~~~~
ls.cc: In member function ‘virtual Boole Pseudo_Solis_Wets::SW(Phenotype&, int, FILE*)’:
ls.cc:248:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                          ^
ls.cc:248:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                             ^
ls.cc:248:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                ^~~~~~~~~~~~~
ls.cc:248:51: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                   ^~~~~~~~~~~~
ls.cc:248:70: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  248 |    register unsigned int i, j, num_successes = 0, num_failures = 0,  all_rho_stepsizes_too_small = 1;
      |                                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from eval.h:38,
                 from support.h:237,
                 from mapping.cc:37:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-mingw_getrusage.o `test -f 'mingw_getrusage.cc' || echo './'`mingw_getrusage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-minmeanmax.o `test -f 'minmeanmax.cc' || echo './'`minmeanmax.cc
In file included from eval.h:38,
                 from support.h:237,
                 from minmeanmax.cc:39:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
minmeanmax.cc: In function ‘void minmeanmax(FILE*, const Population&, int, const GridMapSetInfo*)’:
minmeanmax.cc:51:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                 ^
minmeanmax.cc:51:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                      ^
minmeanmax.cc:51:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |    register int i=0, g=0, b=0;
      |                           ^
minmeanmax.cc:56:76: warning: variable ‘best’ set but not used [-Wunused-but-set-variable]
   56 |    double minimum[ 7+MAX_TORS ], sum[ 7+MAX_TORS ], maximum[ 7+MAX_TORS ], best[ 7+MAX_TORS ];
      |                                                                            ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-mkNewState.o `test -f 'mkNewState.cc' || echo './'`mkNewState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-mkTorTree.o `test -f 'mkTorTree.cc' || echo './'`mkTorTree.cc
In file included from mkNewState.h:31,
                 from mkNewState.cc:33:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
mkNewState.cc: In function ‘void mkNewState(State*, const State*, State*, const Real (*)[3], const int (*)[2048], int, Real (*)[3], const Real (*)[3], int, const Real&, const Real&, const Real&, const Real (*)[8][2], const int*, int, int, FILE*)’:
mkNewState.cc:56:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   56 |     register int i;
      |                  ^
mkTorTree.cc: In function ‘void mkTorTree(const int*, const int (*)[2048], const char (*)[256], int, int (*)[2048], int*, int*, const char*, const char (*)[5], Boole*, int*, int*, Real*, Real*, int*, int*, int, int, FILE*)’:
mkTorTree.cc:88:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int   i = 0;
      |                    ^
mkTorTree.cc:89:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   89 |     register int   j = 0;
      |                    ^
mkTorTree.cc:90:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   90 |     register int   k = 0;
      |                    ^
mkTorTree.cc: At global scope:
mkTorTree.cc:456:5: warning: ‘int check_atomnumber(int, const int*, int, int, FILE*)’ defined but not used [-Wunused-function]
  456 | int check_atomnumber( const int number, const int *atomnumber, const int nrecord,
      |     ^~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-mkRandomState.o `test -f 'mkRandomState.cc' || echo './'`mkRandomState.cc
mkRandomState.cc: In function ‘State mkRandomState(int, Real (*)[8][2], int*, GridMapSetInfo*)’:
mkRandomState.cc:44:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   44 |     register int i;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-nonbonds.o `test -f 'nonbonds.cc' || echo './'`nonbonds.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-openfile.o `test -f 'openfile.cc' || echo './'`openfile.cc
In file included from nonbonds.cc:35:
mdist.h: In function ‘void mdist()’:
mdist.h:45:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                      ^
mdist.h:45:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   45 |         register int i,j;
      |                        ^
mdist.h:32:25: warning: operation on ‘mindist[0][0]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[0][0]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:89:5: note: in expansion of macro ‘set_minmax’
   89 |     set_minmax(C, C, 1.20, 1.545); // mindist[C][C] = 1.20, p. 3510 ; maxdist[C][C] = 1.545, p. 3511
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[1][1]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[1][1]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:96:5: note: in expansion of macro ‘set_minmax’
   96 |     set_minmax(N, N, 1.0974, 1.128); // mindist[N][N] = 1.0974, p. 3513 ; maxdist[N][N] = 1.128, p. 3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[2][2]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[2][2]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:102:5: note: in expansion of macro ‘set_minmax’
  102 |     set_minmax(O, O, 1.208, 1.51); // p.3513, p.3515
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[3][3]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[3][3]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:107:5: note: in expansion of macro ‘set_minmax’
  107 |     set_minmax(H, H, 100.,-100.); // impossible values to prevent such bonds from forming.
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[4][4]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[4][4]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:111:5: note: in expansion of macro ‘set_minmax’
  111 |     set_minmax(XX, XX, 0.9, 2.1); // AutoDock 3 defaults
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[5][5]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[5][5]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:114:5: note: in expansion of macro ‘set_minmax’
  114 |     set_minmax(P, P, 2.18, 2.23); // mindist[P][P] = 2.18, p. 3513 ; maxdist[P][P] = 2.23, p. 3513
      |     ^~~~~~~~~~
mdist.h:32:25: warning: operation on ‘mindist[6][6]’ may be undefined [-Wsequence-point]
   32 |     mindist[(a1)][(a2)] = (mindist[(a2)][(a1)] = (min)-BOND_LENGTH_TOLERANCE);\
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
mdist.h:33:25: warning: operation on ‘maxdist[6][6]’ may be undefined [-Wsequence-point]
   33 |     maxdist[(a1)][(a2)] = (maxdist[(a2)][(a1)] = (max)+BOND_LENGTH_TOLERANCE)
      |     ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mdist.h:116:5: note: in expansion of macro ‘set_minmax’
  116 |     set_minmax(S, S, 2.03, 2.05); // mindist[S][S] = 2.03, p. 3515 ; maxdist[S][S] = 2.05, p. 3515
      |     ^~~~~~~~~~
nonbonds.cc: In function ‘void printbonds(int, const int*, const int (*)[16], const char*, int, int, FILE*)’:
nonbonds.cc:250:13: warning: ‘?:’ using integer constants in boolean context [-Wint-in-bool-context]
  248 |         for (int j=0; j<
      |                       ~~
  249 |             B_print_all_bonds
      |             ~~~~~~~~~~~~~~~~~
  250 |             ? MAX_NBONDS // loop over all the slots for this atom's "j" bonds
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  251 |             : nbonds[i]; // loop over this atom's "j" bonds
      |             ~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-output_state.o `test -f 'output_state.cc' || echo './'`output_state.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-parse_dpf_line.o `test -f 'parse_dpf_line.cc' || echo './'`parse_dpf_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-parse_param_line.o `test -f 'parse_param_line.cc' || echo './'`parse_param_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-parse_PDBQT_line.o `test -f 'parse_PDBQT_line.cc' || echo './'`parse_PDBQT_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-parse_trj_line.o `test -f 'parse_trj_line.cc' || echo './'`parse_trj_line.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-parsetypes.o `test -f 'parsetypes.cc' || echo './'`parsetypes.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-print_2x.o `test -f 'print_2x.cc' || echo './'`print_2x.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-print_atomic_energies.o `test -f 'print_atomic_energies.cc' || echo './'`print_atomic_energies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-print_avsfld.o `test -f 'print_avsfld.cc' || echo './'`print_avsfld.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-writePDBQT.o `test -f 'writePDBQT.cc' || echo './'`writePDBQT.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-print_rem.o `test -f 'print_rem.cc' || echo './'`print_rem.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-printdate.o `test -f 'printdate.cc' || echo './'`printdate.cc
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from writePDBQT.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-printEnergies.o `test -f 'printEnergies.cc' || echo './'`printEnergies.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-printhms.o `test -f 'printhms.cc' || echo './'`printhms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-prClusterHist.o `test -f 'prClusterHist.cc' || echo './'`prClusterHist.cc
prClusterHist.cc: In function ‘void prClusterHist(int, int, const Real&, const int*, const int (*)[2000], const Real*, const Real (*)[2000], const Real*, int, FILE*)’:
prClusterHist.cc:51:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   51 |     register int  Rank=0,
      |                   ^~~~
prClusterHist.cc:52:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |                   j=0;
      |                   ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-prInitialState.o `test -f 'prInitialState.cc' || echo './'`prInitialState.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-prTorConList.o `test -f 'prTorConList.cc' || echo './'`prTorConList.cc
prTorConList.cc: In function ‘void prTorConList(int, const Boole*, const short unsigned int (*)[256], Real (*)[8][2], int*, int, FILE*)’:
prTorConList.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
In file included from qtransform.h:35,
                 from cnv_state_to_coords.h:32,
                 from writePDBQT.h:34,
                 from prInitialState.cc:36:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
prInitialState.cc: In function ‘void prInitialState(const EnergyBreakdown*, int, int, const Real (*)[3], const char (*)[128], const int*, EnergyComponent*, const Real*, int, Boole, Unbound_Model, int, FILE*)’:
prInitialState.cc:59:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   59 |     register int i = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-pso.o `test -f 'pso.cc' || echo './'`pso.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-qmultiply.o `test -f 'qmultiply.cc' || echo './'`qmultiply.cc
In file included from eval.h:38,
                 from support.h:237,
                 from gs.h:36,
                 from pso.h:4,
                 from pso.cc:1:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
In file included from qmultiply.cc:35:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qmultiply.cc:42:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   42 |                 register const Quat *const ql,   //left
      |                                            ^~
qmultiply.cc:43:44: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   43 |                 register const Quat *const qr )  //right
      |                                            ^~
qmultiply.cc: In function ‘void qmultiply(Quat*, const Quat*, const Quat*)’:
qmultiply.cc:66:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                     ^
qmultiply.cc:66:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                       ^
qmultiply.cc:66:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                         ^
qmultiply.cc:66:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double x,y,z,w;
      |                           ^
qmultiply.cc: In function ‘AxisAngle QuatToAxisAngle(const Quat&)’:
qmultiply.cc:224:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  224 |         register double angle = 2. * acos( input.w );
      |                         ^~~~~
qmultiply.cc: In function ‘Quat inverse(const Quat&)’:
qmultiply.cc:356:19: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                   ^~~~
qmultiply.cc:356:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  356 |     register Quat conj, inv;
      |                         ^~~
qmultiply.cc:357:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  357 |     register double inv_squared_magnitude;
      |                     ^~~~~~~~~~~~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-qtransform.o `test -f 'qtransform.cc' || echo './'`qtransform.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-quicksort.o `test -f 'quicksort.cc' || echo './'`quicksort.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-ranlib.o `test -f 'ranlib.cc' || echo './'`ranlib.cc
In file included from qtransform.h:35,
                 from qtransform.cc:32:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
qtransform.cc: In function ‘void qtransform(const Coord&, const Quat&, Real (*)[3], int)’:
qtransform.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int a;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-rep.o `test -f 'rep.cc' || echo './'`rep.cc
ranlib.cc: In function ‘ignpoi(double const&)’:
ranlib.cc:1144:21: warning: ‘m’ may be used uninitialized [-Wmaybe-uninitialized]
 1144 |     if(u > 0.458) j = IMIN(l,m);
      |                   ~~^~~~~~~~~~~
ranlib.cc:995:33: note: ‘m’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                                 ^
ranlib.cc:1136:5: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
 1136 |     if(u <= p0) return ignpoi;
      |     ^~
ranlib.cc:996:58: note: ‘p’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                          ^
ranlib.cc:1023:5: warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
 1023 |     if(ignpoi >= l) return ignpoi;
      |     ^~
ranlib.cc:995:31: note: ‘l’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |                               ^
ranlib.cc:1030:9: warning: ‘d’ may be used uninitialized [-Wmaybe-uninitialized]
 1030 |     if(d*u >= difmuk*difmuk*difmuk) return ignpoi;
      |        ~^~
ranlib.cc:996:26: note: ‘d’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                          ^
ranlib.cc:1017:7: warning: ‘s’ may be used uninitialized [-Wmaybe-uninitialized]
 1017 |     g = mu+s*snorm();
      |     ~~^~~~~~~~~~~~~~
ranlib.cc:996:71: note: ‘s’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                                       ^
ranlib.cc:1092:5: warning: ‘ignpoi’ may be used uninitialized [-Wmaybe-uninitialized]
 1092 |     if(ignpoi >= 10) goto S80;
      |     ^~
ranlib.cc:995:14: note: ‘ignpoi’ was declared here
  995 | FourByteLong ignpoi,j,k,kflag,l,m;
      |              ^~~~~~
ranlib.cc:1104:7: warning: ‘difmuk’ may be used uninitialized [-Wmaybe-uninitialized]
 1104 |     v = difmuk/fk;
      |     ~~^~~~~~~~~~~
ranlib.cc:996:32: note: ‘difmuk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                ^~~~~~
ranlib.cc:1102:9: warning: ‘fk’ may be used uninitialized [-Wmaybe-uninitialized]
 1102 |     del = 8.333333E-2/fk;
      |     ~~~~^~~~~~~~~~~~~~~~
ranlib.cc:996:41: note: ‘fk’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                         ^~
ranlib.cc:1116:38: warning: ‘c0’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                ~~~~~~~~~~~~~~~~~~~~~~^~~~
ranlib.cc:996:14: note: ‘c0’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |              ^~
ranlib.cc:1116:31: warning: ‘c1’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                 ~~~~~~~~~~~~~~^~~~
ranlib.cc:996:17: note: ‘c1’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                 ^~
ranlib.cc:1116:24: warning: ‘c2’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:20: note: ‘c2’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                    ^~
ranlib.cc:1116:24: warning: ‘c3’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |                  ~~~~~~^~~~
ranlib.cc:996:23: note: ‘c3’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                       ^~
ranlib.cc:1116:8: warning: ‘omega’ may be used uninitialized [-Wmaybe-uninitialized]
 1116 |     fy = omega*(((c3*xx+c2)*xx+c1)*xx+c0);
      |     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ranlib.cc:996:52: note: ‘omega’ was declared here
  996 | Real b1,b2,c,c0,c1,c2,c3,d,del,difmuk,e,fk,fx,fy,g,omega,p,p0,px,py,q,s,
      |                                                    ^~~~~
rep.cc: In constructor ‘IntVector::IntVector(int)’:
rep.cc:77:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   77 |    register int i;
      |                 ^
rep.cc: In constructor ‘IntVector::IntVector(int, int, int)’:
rep.cc:95:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   95 |    register int i;
      |                 ^
rep.cc: In copy constructor ‘IntVector::IntVector(const IntVector&)’:
rep.cc:129:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  129 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& IntVector::operator=(const Representation&)’:
rep.cc:237:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  237 |    register unsigned int i;
      |                          ^
rep.cc: In constructor ‘RealVector::RealVector(int, const double&, const double&, const double&)’:
rep.cc:329:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  329 |    register int i=0;
      |                 ^
rep.cc: In copy constructor ‘RealVector::RealVector(const RealVector&)’:
rep.cc:428:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& RealVector::operator=(const Representation&)’:
rep.cc:553:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  553 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘ConstrainedRealVector::ConstrainedRealVector(const ConstrainedRealVector&)’:
rep.cc:641:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  641 |    for (register unsigned int i=0; i<original.number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘void ConstrainedRealVector::normalize()’:
rep.cc:753:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  753 |       register unsigned int i;
      |                             ^
rep.cc:754:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                       ^~~~~~~
rep.cc:754:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  754 |       register double tempsum = 0.0, hypotenuse;
      |                                      ^~~~~~~~~~
rep.cc: In member function ‘virtual Representation& ConstrainedRealVector::operator=(const Representation&)’:
rep.cc:812:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  812 |    register unsigned int i;
      |                          ^
rep.cc: In copy constructor ‘BitVector::BitVector(const BitVector&)’:
rep.cc:900:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  900 |    for (register unsigned int i=0; i<number_of_pts; i++) {
      |                               ^
rep.cc: In member function ‘virtual Representation& BitVector::operator=(const Representation&)’:
rep.cc:994:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  994 |    register unsigned int i;
      |                          ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-scauchy.o `test -f 'scauchy.cc' || echo './'`scauchy.cc
scauchy.cc: In function ‘Real scauchy2()’:
scauchy.cc:81:15: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |               ^
scauchy.cc:81:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                  ^
scauchy.cc:81:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                     ^~
scauchy.cc:81:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   81 | register Real x, y, r1, r2;
      |                         ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-setflags.o `test -f 'setflags.cc' || echo './'`setflags.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-simanneal.o `test -f 'simanneal.cc' || echo './'`simanneal.cc
setflags.cc: In function ‘setflags(int, char const**, char const*)’:
setflags.cc:293:20: warning: ‘__strncpy_chk’ specified bound depends on the length of the source argument [-Wstringop-truncation]
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                    ^
setflags.cc:293:55: note: length computed here
  293 |             strncpy(logFileName, dock_param_fn, strlen(dock_param_fn)-4);
      |                                                 ~~~~~~^~~~~~~~~~~~~~~
In file included from getInitialState.h:31,
                 from simanneal.h:33,
                 from simanneal.cc:38:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
simanneal.cc: In function ‘void simanneal(int*, int, int*, GroupEnergy*, int, const Real&, const char (*)[128], Real*, Real*, Real*, Boole, Real (*)[3], Real (*)[3], const char*, EnergyTables*, Real*, Boole, EnergyComponent*, int, int, FourByteLong (*)[2], const clock_t&, MapType*, int, int, NonbondParam*, int, int, State, State*, const Real&, Boole, const Real&, Boole, const char*, const Real*, const Real&, Boole, const Real&, const tms&, const int (*)[2048], const Real&, Boole, const Real&, const char*, int, int, int, const Real&, Boole, const Real&, const int*, Real (*)[3], Boole, Boole, int, int, const Real&, const Real&, Boole, const Real&, Boole, const char*, Boole, short unsigned int (*)[256], const Boole*, Boole, short unsigned int*, const Real (*)[8][2], const int*, Boole, Boole, Boole, const Real&, const Real&, int, int, const int*, Boole, const Real&, const Real&, const ParameterEntry*, const Real&, GridMapSetInfo*, Boole, Boole, const char (*)[256], Unbound_Model, int, FILE*)’:
simanneal.cc:188:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  188 |     register int i = 0;
      |                  ^
simanneal.cc:189:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  189 |     register int nacc = 0;
      |                  ^~~~
simanneal.cc:190:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  190 |     register int nAcc = 0;
      |                  ^~~~
simanneal.cc:191:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  191 |     register int nAccProb = 0;
      |                  ^~~~~~~~
simanneal.cc:192:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  192 |     register int nedge = 0;
      |                  ^~~~~
simanneal.cc:193:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  193 |     register int nrej = 0;
      |                  ^~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-sort_enrg.o `test -f 'sort_enrg.cc' || echo './'`sort_enrg.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-stack.o `test -f 'stack.cc' || echo './'`stack.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-stop.o `test -f 'stop.cc' || echo './'`stop.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-strindex.o `test -f 'strindex.cc' || echo './'`strindex.cc
strindex.cc: In function ‘int strindex(const char*, const char*)’:
strindex.cc:54:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                  ^
strindex.cc:54:20: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                    ^~
strindex.cc:54:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 |     register int i,c1,c2;
      |                       ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-success.o `test -f 'success.cc' || echo './'`success.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-support.o `test -f 'support.cc' || echo './'`support.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-swap.o `test -f 'swap.cc' || echo './'`swap.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-threadlog.o `test -f 'threadlog.cc' || echo './'`threadlog.cc
In file included from eval.h:38,
                 from support.cc:34:
qmultiply.h:53:59: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                           ^~
qmultiply.h:53:90: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   53 | void qmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                          ^~
qmultiply.h:54:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                               ^~
qmultiply.h:54:94: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   54 | void qconjmultiply( Quat *const q, register const Quat *const ql, register const Quat *const qr );
      |                                                                                              ^~
eval.h: In member function ‘void Eval::setup(Real (*)[3], Real*, Real*, Real*, int*, int, GridMapSetInfo*, MapType*, EnergyComponent*, NonbondParam*, EnergyTables*, int, int*, GroupEnergy*, Boole, Boole, Boole*, Boole, short unsigned int*, short unsigned int (*)[256], Real (*)[3], int (*)[2048], Real (*)[3], const State&, const Molecule&, int*, Boole, const Real&, const Real&, const Real&, Boole, Boole, int, int, FILE*)’:
eval.h:195:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  195 |     register int i;
      |                  ^
support.cc: In copy constructor ‘Population::Population(const Population&)’:
support.cc:52:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   52 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::msort(int)’:
support.cc:147:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  147 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::print(FILE*, int) const’:
support.cc:187:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  187 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsStates(FILE*, int, int) const’:
support.cc:348:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  348 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::printPopulationAsCoordsEnergies(FILE*, int, int) const’:
support.cc:388:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  388 |    register int i;
      |                 ^
support.cc: In member function ‘void Population::set_eob(int*)’:
support.cc:433:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  433 |    for (register int i=0; i<MAX_TORS; i++) {
      |                      ^
support.cc: In constructor ‘Genotype::Genotype(unsigned int, Representation**)’:
support.cc:456:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                          ^
support.cc:456:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                             ^
support.cc:456:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  456 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Genotype::Genotype(const Genotype&)’:
support.cc:484:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  484 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Genotype::~Genotype()’:
support.cc:512:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  512 |    register unsigned int i;
      |                          ^
support.cc: In constructor ‘Phenotype::Phenotype(unsigned int, Representation**, Eval*)’:
support.cc:674:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                          ^
support.cc:674:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                             ^
support.cc:674:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  674 |    register unsigned int i, j, k;
      |                                ^
support.cc: In copy constructor ‘Phenotype::Phenotype(const Phenotype&)’:
support.cc:700:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  700 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Phenotype& Phenotype::operator=(const Phenotype&)’:
support.cc:731:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  731 |    register unsigned int i;
      |                          ^
support.cc: In destructor ‘Phenotype::~Phenotype()’:
support.cc:781:26: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  781 |    register unsigned int i;
      |                          ^
support.cc: In member function ‘Population& Population::operator=(const Population&)’:
support.cc:968:17: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  968 |    register int i;
      |                 ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-timesys.o `test -f 'timesys.cc' || echo './'`timesys.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-timesyshms.o `test -f 'timesyshms.cc' || echo './'`timesyshms.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-torNorVec.o `test -f 'torNorVec.cc' || echo './'`torNorVec.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-torsion.o `test -f 'torsion.cc' || echo './'`torsion.cc
torNorVec.cc: In function ‘void torNorVec(const Real (*)[3], int, const int (*)[2048], Real (*)[3], int, FILE*)’:
torNorVec.cc:47:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   47 |     register int xyz = 0;
      |                  ^~~
torNorVec.cc:48:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   48 |     register int j = 0;
      |                  ^
torNorVec.cc: In function ‘void update_torsion_vectors(const Real (*)[3], int, const int (*)[2048], Real (*)[3], Molecule*, int, int, FILE*)’:
torNorVec.cc:104:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                  ^
torNorVec.cc:104:23: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  104 |     register int i=0, j=0;
      |                       ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-trilinterp.o `test -f 'trilinterp.cc' || echo './'`trilinterp.cc
torsion.cc: In function ‘void torsion(const State&, Real (*)[3], const Real (*)[3], const int (*)[2048], int)’:
torsion.cc:62:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   62 |     register double crdtemp[SPACE];
      |                     ^~~~~~~
torsion.cc:63:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   63 |     register double  d[SPACE];
      |                      ^
torsion.cc:64:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register double sv[SPACE];
      |                     ^~
torsion.cc:65:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register double ov[SPACE];
      |                     ^~
torsion.cc:66:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register double  k[SPACE][SPACE];
      |                      ^
torsion.cc:67:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                     ^
torsion.cc:67:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                        ^
torsion.cc:67:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                           ^
torsion.cc:67:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                              ^~~
torsion.cc:67:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register double s, c, o, vni, this_tor;                /* "o" is: 1. - c, "One minus c". */
      |                                   ^~~~~~~~
torsion.cc:68:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                  ^
torsion.cc:68:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                     ^
torsion.cc:68:24: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                        ^~~~~
torsion.cc:68:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                               ^~~~~~
torsion.cc:68:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   68 |     register int n, a, mvatm, atmnum, numatmmoved;
      |                                       ^~~~~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-usage.o `test -f 'usage.cc' || echo './'`usage.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-weedbonds.o `test -f 'weedbonds.cc' || echo './'`weedbonds.cc
trilinterp.cc: In function ‘Real trilinterp(int, int, const Real (*)[3], const Real*, const Real*, const int*, MapType*, const GridMapSetInfo*, const int*, EnergyComponent*, EnergyComponent*, EnergyComponent*)’:
trilinterp.cc:88:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   88 |     register int i;               /* i-th atom */
      |                  ^
trilinterp.cc:92:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                         ^
trilinterp.cc:92:28: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                            ^
trilinterp.cc:92:31: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   92 |         register double e, m, d;
      |                               ^
trilinterp.cc:93:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                         ^
trilinterp.cc:93:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                              ^
trilinterp.cc:93:35: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   93 |         register double u,   v,   w;
      |                                   ^
trilinterp.cc:96:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   96 |         register int AtomType;        /* atom type */
      |                      ^~~~~~~~
trilinterp.cc:97:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                      ^~
trilinterp.cc:97:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                           ^~
trilinterp.cc:97:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   97 |         register int u0,  v0,  w0;
      |                                ^~
trilinterp.cc:98:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   98 |         register int u1,  v1,  w1;
      |                                ^~
trilinterp.cc:99:25: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                         ^
trilinterp.cc:99:27: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                           ^
trilinterp.cc:99:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   99 |         register double x,y,z;
      |                             ^
trilinterp.cc:98:22: warning: variable ‘u1’ set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                      ^~
trilinterp.cc:98:27: warning: variable ‘v1’ set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                           ^~
trilinterp.cc:98:32: warning: variable ‘w1’ set but not used [-Wunused-but-set-variable]
   98 |         register int u1,  v1,  w1;
      |                                ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-warn_bad_file.o `test -f 'warn_bad_file.cc' || echo './'`warn_bad_file.cc
weedbonds.cc: In function ‘void weedbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int*, NonbondParam*, int*, int, const int*, int, int, FILE*)’:
weedbonds.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int i = 0;
      |                  ^
weedbonds.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int j = 0;
      |                  ^
weedbonds.cc:67:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   67 |     register int k = 0;
      |                  ^
weedbonds.cc: In function ‘void print_nonbonds(int, const char (*)[5], const int*, int, const int (*)[2048], int (*)[2048], int, const NonbondParam*, const int*, int, FILE*)’:
weedbonds.cc:252:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  252 |     register int i = 0;
      |                  ^
weedbonds.cc:253:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  253 |     register int j = 0;
      |                  ^
weedbonds.cc:254:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  254 |     register int k = 0;
      |                  ^
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-coliny.o `test -f 'coliny.cc' || echo './'`coliny.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-eintcal.o `test -f 'eintcal.cc' || echo './'`eintcal.cc
eintcal.cc: In function ‘Real eintcal(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, FILE*)’:
eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-eintcalPrint.o `test -f 'eintcalPrint.cc' || echo './'`eintcalPrint.cc
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-intnbtable.o `test -f 'intnbtable.cc' || echo './'`intnbtable.cc
In file included from eintcalPrint.cc:29:
./eintcal.cc: In function ‘Real eintcalPrint(const NonbondParam*, const EnergyTables*, const Real (*)[3], int, int*, GroupEnergy*, Boole, Boole, const Real&, const Real*, Boole, Boole, int, const int*, const char (*)[3], int, FILE*)’:
./eintcal.cc:206:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  206 |             register double r2;
      |                             ^~
intnbtable.cc: In function ‘void intnbtable(Boole*, int, int, const GridMapSetInfo*, const Real&, const Real&, int, int, Boole, const Real&, Linear_FE_Model, const double&, EnergyTables*, Boole, FILE*, int)’:
intnbtable.cc:83:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   83 |     register int i;
      |                  ^
intnbtable.cc: In function ‘void setup_distdepdiel(FILE*, int, EnergyTables*)’:
intnbtable.cc:268:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  268 |     register int i=0;
      |                  ^
intnbtable.cc:269:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  269 |     register double distance=0.0L;
      |                     ^~~~~~~~
g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autodock\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.6\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_DOUBLE -DUSE_8A_NBCUTOFF -DUSE_INT_AS_FOURBYTELONG -O3  -fopenmp  -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autodock4_omp-nbe.o `test -f 'nbe.cc' || echo './'`nbe.cc
g++ -O3 -Wall -Wno-write-strings  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection    -Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o autodock4 autodock4-main.o autodock4-alea.o autodock4-analysis.o autodock4-atom_parameter_manager.o autodock4-banner.o autodock4-bestpdb.o autodock4-calculateEnergies.o autodock4-call_glss.o autodock4-call_ls.o autodock4-center_ligand.o autodock4-changeState.o autodock4-check_header_float.o autodock4-check_header_int.o autodock4-check_header_line.o autodock4-cluster_analysis.o autodock4-clmode.o autodock4-cnv_state_to_coords.o autodock4-com.o autodock4-conformation_sampler.o autodock4-dimLibrary.o autodock4-distdepdiel.o autodock4-stateLibrary.o autodock4-readfield.o autodock4-readmap.o autodock4-readPDBQT.o autodock4-read_parameter_library.o autodock4-eval.o autodock4-gencau.o autodock4-getrms.o autodock4-get_atom_type.o autodock4-getInitialState.o autodock4-getpdbcrds.o autodock4-gs.o autodock4-initautodock.o autodock4-input_state.o autodock4-investigate.o autodock4-linpack.o autodock4-ls.o autodock4-mapping.o autodock4-mingw_getrusage.o autodock4-minmeanmax.o autodock4-mkNewState.o autodock4-mkTorTree.o autodock4-mkRandomState.o autodock4-nonbonds.o autodock4-openfile.o autodock4-output_state.o autodock4-parse_dpf_line.o autodock4-parse_param_line.o autodock4-parse_PDBQT_line.o autodock4-parse_trj_line.o autodock4-parsetypes.o autodock4-print_2x.o autodock4-print_atomic_energies.o autodock4-print_avsfld.o autodock4-writePDBQT.o autodock4-print_rem.o autodock4-printdate.o autodock4-printEnergies.o autodock4-printhms.o autodock4-prClusterHist.o autodock4-prInitialState.o autodock4-prTorConList.o autodock4-pso.o autodock4-qmultiply.o autodock4-qtransform.o autodock4-quicksort.o autodock4-ranlib.o autodock4-rep.o autodock4-scauchy.o autodock4-setflags.o autodock4-simanneal.o autodock4-sort_enrg.o autodock4-stack.o autodock4-stop.o autodock4-strindex.o autodock4-success.o autodock4-support.o autodock4-swap.o autodock4-threadlog.o autodock4-timesys.o autodock4-timesyshms.o autodock4-torNorVec.o autodock4-torsion.o autodock4-trilinterp.o autodock4-usage.o autodock4-weedbonds.o autodock4-warn_bad_file.o autodock4-coliny.o autodock4-eintcal.o autodock4-eintcalPrint.o autodock4-intnbtable.o autodock4-nbe.o  -lm 
nbe.cc: In function ‘void nbe(const GridMapSetInfo*, const EnergyTables*, int, int, FILE*)’:
nbe.cc:64:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   64 |     register int i = 0;
      |                  ^
nbe.cc:65:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   65 |     register int j = 0;
      |                  ^
nbe.cc:66:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
   66 |     register int k = 0;
      |                  ^
g++ -O3 -Wall -Wno-write-strings   -fopenmp  -fopenmp -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -fopenmp  -fopenmp -Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o autodock4.omp autodock4_omp-main.o autodock4_omp-alea.o autodock4_omp-analysis.o autodock4_omp-atom_parameter_manager.o autodock4_omp-banner.o autodock4_omp-bestpdb.o autodock4_omp-calculateEnergies.o autodock4_omp-call_glss.o autodock4_omp-call_ls.o autodock4_omp-center_ligand.o autodock4_omp-changeState.o autodock4_omp-check_header_float.o autodock4_omp-check_header_int.o autodock4_omp-check_header_line.o autodock4_omp-cluster_analysis.o autodock4_omp-clmode.o autodock4_omp-cnv_state_to_coords.o autodock4_omp-com.o autodock4_omp-conformation_sampler.o autodock4_omp-dimLibrary.o autodock4_omp-distdepdiel.o autodock4_omp-stateLibrary.o autodock4_omp-readfield.o autodock4_omp-readmap.o autodock4_omp-readPDBQT.o autodock4_omp-read_parameter_library.o autodock4_omp-eval.o autodock4_omp-gencau.o autodock4_omp-getrms.o autodock4_omp-get_atom_type.o autodock4_omp-getInitialState.o autodock4_omp-getpdbcrds.o autodock4_omp-gs.o autodock4_omp-initautodock.o autodock4_omp-input_state.o autodock4_omp-investigate.o autodock4_omp-linpack.o autodock4_omp-ls.o autodock4_omp-mapping.o autodock4_omp-mingw_getrusage.o autodock4_omp-minmeanmax.o autodock4_omp-mkNewState.o autodock4_omp-mkTorTree.o autodock4_omp-mkRandomState.o autodock4_omp-nonbonds.o autodock4_omp-openfile.o autodock4_omp-output_state.o autodock4_omp-parse_dpf_line.o autodock4_omp-parse_param_line.o autodock4_omp-parse_PDBQT_line.o autodock4_omp-parse_trj_line.o autodock4_omp-parsetypes.o autodock4_omp-print_2x.o autodock4_omp-print_atomic_energies.o autodock4_omp-print_avsfld.o autodock4_omp-writePDBQT.o autodock4_omp-print_rem.o autodock4_omp-printdate.o autodock4_omp-printEnergies.o autodock4_omp-printhms.o autodock4_omp-prClusterHist.o autodock4_omp-prInitialState.o autodock4_omp-prTorConList.o autodock4_omp-pso.o autodock4_omp-qmultiply.o autodock4_omp-qtransform.o autodock4_omp-quicksort.o autodock4_omp-ranlib.o autodock4_omp-rep.o autodock4_omp-scauchy.o autodock4_omp-setflags.o autodock4_omp-simanneal.o autodock4_omp-sort_enrg.o autodock4_omp-stack.o autodock4_omp-stop.o autodock4_omp-strindex.o autodock4_omp-success.o autodock4_omp-support.o autodock4_omp-swap.o autodock4_omp-threadlog.o autodock4_omp-timesys.o autodock4_omp-timesyshms.o autodock4_omp-torNorVec.o autodock4_omp-torsion.o autodock4_omp-trilinterp.o autodock4_omp-usage.o autodock4_omp-weedbonds.o autodock4_omp-warn_bad_file.o autodock4_omp-coliny.o autodock4_omp-eintcal.o autodock4_omp-eintcalPrint.o autodock4_omp-intnbtable.o autodock4_omp-nbe.o  -lm 
support.h: In member function ‘__ct_base ’:
support.h:542:35: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  542 |     heap = new Individual[num_inds];
      |                                   ^
/usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here
  140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t)
      |                          ^
In member function ‘operator=’,
    inlined from ‘search’ at gs.cc:1504:16:
support.cc:983:30: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  983 |    heap = new Individual[size];
      |                              ^
/usr/include/c++/15/new: In member function ‘search’:
/usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here
  140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t)
      |                          ^
In member function ‘__ct ’,
    inlined from ‘search’ at pso.cc:85:27:
support.cc:60:30: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   60 |    heap = new Individual[size];
      |                              ^
/usr/include/c++/15/new: In member function ‘search’:
/usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here
  140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t)
      |                          ^
support.h: In member function ‘__ct_base ’:
support.h:542:35: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  542 |     heap = new Individual[num_inds];
      |                                   ^
/usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here
  140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t)
      |                          ^
In member function ‘operator=’,
    inlined from ‘search’ at gs.cc:1504:16:
support.cc:983:30: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  983 |    heap = new Individual[size];
      |                              ^
/usr/include/c++/15/new: In member function ‘search’:
/usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here
  140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t)
      |                          ^
In member function ‘__ct ’,
    inlined from ‘search’ at pso.cc:85:27:
support.cc:60:30: warning: argument 1 value ‘18446744073709551615’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   60 |    heap = new Individual[size];
      |                              ^
/usr/include/c++/15/new: In member function ‘search’:
/usr/include/c++/15/new:140:26: note: in a call to allocation function ‘operator new []’ declared here
  140 | _GLIBCXX_NODISCARD void* operator new[](std::size_t)
      |                          ^
/usr/bin/ld: /tmp/ccCYeVB2.ltrans2.ltrans.o: in function `threadLogOpen(int)':
/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock/threadlog.cc:48:(.text+0x7bfc): warning: the use of `tempnam' is dangerous, better use `mkstemp'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
~/build/BUILD/autodocksuite-4.2.6-build/src
~/build/BUILD/autodocksuite-4.2.6-build/src/autogrid ~/build/BUILD/autodocksuite-4.2.6-build/src
+ popd
+ pushd /builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' '-flto=auto -ffat-lto-objectsx' '!=' x ']'
++ find . -type f -name configure -print
+ for file in $(find . -type f -name configure -print)
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\) = /__attribute__ ((used)) char (*f) () = /g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \(\*f\) \(\);/__attribute__ ((used)) char (*f) ();/g' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed -r --in-place=.backup 's/^char \$2 \(\);/__attribute__ ((used)) char \$2 ();/g' ./configure
+ diff -u ./configure.backup ./configure
--- ./configure.backup	2014-07-19 01:59:01.000000000 +0000
+++ ./configure	2024-12-19 19:07:51.007460545 +0000
@@ -1868,7 +1868,7 @@
 #ifdef __cplusplus
 extern "C"
 #endif
-char $2 ();
+__attribute__ ((used)) char $2 ();
 /* The GNU C library defines this for functions which it implements
     to always fail with ENOSYS.  Some functions are actually named
     something starting with __ and the normal name is an alias.  */
+ /usr/bin/sed --in-place=.backup '1{$!N;$!N};$!N;s/int x = 1;\nint y = 0;\nint z;\nint nan;/volatile int x = 1; volatile int y = 0; volatile int z, nan;/;P;D' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ /usr/bin/sed --in-place=.backup 's#^lt_cv_sys_global_symbol_to_cdecl=.*#lt_cv_sys_global_symbol_to_cdecl="sed -n -e '\''s/^T .* \\(.*\\)$/extern int \\1();/p'\'' -e '\''s/^$symcode* .* \\(.*\\)$/extern char \\1;/p'\''"#' ./configure
+ diff -u ./configure.backup ./configure
+ mv ./configure.backup ./configure
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.guess
+ '[' -f /usr/lib/rpm/redhat/config.guess ']'
+ /usr/bin/rm -f ./config.guess
++ basename ./config.guess
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.guess ./config.guess
'/usr/lib/rpm/redhat/config.guess' -> './config.guess'
+ for i in $(find $(dirname ./configure) -name config.guess -o -name config.sub)
++ basename ./config.sub
+ '[' -f /usr/lib/rpm/redhat/config.sub ']'
+ /usr/bin/rm -f ./config.sub
++ basename ./config.sub
+ /usr/bin/cp -fv /usr/lib/rpm/redhat/config.sub ./config.sub
'/usr/lib/rpm/redhat/config.sub' -> './config.sub'
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
+ ./configure --build=s390x-redhat-linux --host=s390x-redhat-linux --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking build system type... s390x-redhat-linux-gnu
checking host system type... s390x-redhat-linux-gnu
checking for s390x-redhat-linux-gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... none
checking for sqrt in -lm... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... no
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for getpid... yes
checking for GetProcessId... no
checking for fchmod... yes
checking for setlinebuf... yes
checking for sysconf... yes
checking for times... yes
checking for getrusage... yes
checking for pow... yes
checking for sqrt... yes
checking for strncasecmp... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
+ make V=1 -j2
rm -f default_parameters.h
csh ./../autodock/paramdat2h.csh ./../autodock/AD4_parameters.dat  ./../autodock/AD4.1_bound.dat > default_parameters.h
sh ./copyfilesfromAD
make  all-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp
main.cpp: In function ‘int main(int, char**)’:
main.cpp:427:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |              ^
main.cpp:427:21: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                     ^~
main.cpp:427:29: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                             ^
main.cpp:427:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                    ^
main.cpp:427:43: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                           ^~~~~~
main.cpp:427:55: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  427 | register int i = 0, ii = 0, j = 0, k = 0, indx_r = 0, i_smooth;
      |                                                       ^~~~~~~~
main.cpp:428:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |              ^~
main.cpp:428:22: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                      ^~
main.cpp:428:30: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                              ^~
main.cpp:428:38: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                      ^~~~~~~~~
main.cpp:428:54: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                      ^~~
main.cpp:428:63: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                               ^~
main.cpp:428:71: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                                       ^~
main.cpp:428:79: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  428 | register int ia = 0, ib = 0, ic = 0, map_index = -1, iat = 0, i1 = 0, i2 = 0, i3 = 0;
      |                                                                               ^~
main.cpp:429:14: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  429 | register int closestH = 0;
      |              ^~~~~~~~
main.cpp:214:5: warning: variable ‘parameter_library_found’ set but not used [-Wunused-but-set-variable]
  214 | int parameter_library_found = 0;
      |     ^~~~~~~~~~~~~~~~~~~~~~~
main.cpp:263:8: warning: variable ‘maptypeptr’ set but not used [-Wunused-but-set-variable]
  263 | char * maptypeptr; /*ptr for current map->type*/
      |        ^~~~~~~~~~
main.cpp:301:44: warning: variable ‘nitrogen’ set but not used [-Wunused-but-set-variable]
  301 | int hydrogen, carbon, arom_carbon, oxygen, nitrogen;
      |                                            ^~~~~~~~
main.cpp:302:21: warning: variable ‘nonHB_nitrogen’ set but not used [-Wunused-but-set-variable]
  302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur;
      |                     ^~~~~~~~~~~~~~
main.cpp:302:46: warning: variable ‘nonHB_sulphur’ set but not used [-Wunused-but-set-variable]
  302 | int nonHB_hydrogen, nonHB_nitrogen, sulphur, nonHB_sulphur;
      |                                              ^~~~~~~~~~~~~
main.cpp:305:5: warning: variable ‘chlorine’ set but not used [-Wunused-but-set-variable]
  305 | int chlorine, bromine, fluorine, iodine;
      |     ^~~~~~~~
main.cpp:305:15: warning: variable ‘bromine’ set but not used [-Wunused-but-set-variable]
  305 | int chlorine, bromine, fluorine, iodine;
      |               ^~~~~~~
main.cpp:305:24: warning: variable ‘fluorine’ set but not used [-Wunused-but-set-variable]
  305 | int chlorine, bromine, fluorine, iodine;
      |                        ^~~~~~~~
main.cpp:305:34: warning: variable ‘iodine’ set but not used [-Wunused-but-set-variable]
  305 | int chlorine, bromine, fluorine, iodine;
      |                                  ^~~~~~
main.cpp:307:5: warning: variable ‘map_hydrogen’ set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |     ^~~~~~~~~~~~
main.cpp:307:19: warning: variable ‘map_carbon’ set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                   ^~~~~~~~~~
main.cpp:307:31: warning: variable ‘map_arom_carbon’ set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                               ^~~~~~~~~~~~~~~
main.cpp:307:48: warning: variable ‘map_oxygen’ set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                                                ^~~~~~~~~~
main.cpp:307:60: warning: variable ‘map_nitrogen’ set but not used [-Wunused-but-set-variable]
  307 | int map_hydrogen, map_carbon, map_arom_carbon, map_oxygen, map_nitrogen;
      |                                                            ^~~~~~~~~~~~
main.cpp:308:5: warning: variable ‘map_nonHB_hydrogen’ set but not used [-Wunused-but-set-variable]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |     ^~~~~~~~~~~~~~~~~~
main.cpp:308:25: warning: variable ‘map_nonHB_nitrogen’ set but not used [-Wunused-but-set-variable]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                         ^~~~~~~~~~~~~~~~~~
main.cpp:308:45: warning: variable ‘map_sulphur’ set but not used [-Wunused-but-set-variable]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                                             ^~~~~~~~~~~
main.cpp:308:58: warning: variable ‘map_nonHB_sulphur’ set but not used [-Wunused-but-set-variable]
  308 | int map_nonHB_hydrogen, map_nonHB_nitrogen, map_sulphur, map_nonHB_sulphur;
      |                                                          ^~~~~~~~~~~~~~~~~
main.cpp:309:5: warning: variable ‘map_chlorine’ set but not used [-Wunused-but-set-variable]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |     ^~~~~~~~~~~~
main.cpp:309:19: warning: variable ‘map_bromine’ set but not used [-Wunused-but-set-variable]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                   ^~~~~~~~~~~
main.cpp:309:32: warning: variable ‘map_fluorine’ set but not used [-Wunused-but-set-variable]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                                ^~~~~~~~~~~~
main.cpp:309:46: warning: variable ‘map_iodine’ set but not used [-Wunused-but-set-variable]
  309 | int map_chlorine, map_bromine, map_fluorine, map_iodine;
      |                                              ^~~~~~~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp
main.cpp:1446:46: warning: ‘cA’ may be used uninitialized [-Wmaybe-uninitialized]
 1446 |                 gridmap[ligtype].cA[rectype] = cA;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
main.cpp:388:8: note: ‘cA’ was declared here
  388 | double cA, cB, tmpconst;
      |        ^~
main.cpp:1447:46: warning: ‘cB’ may be used uninitialized [-Wmaybe-uninitialized]
 1447 |                 gridmap[ligtype].cB[rectype] = cB;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~
main.cpp:388:12: note: ‘cB’ was declared here
  388 | double cA, cB, tmpconst;
      |            ^~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp
read_parameter_library.cpp: In function ‘void setup_parameter_library(FILE*, int, const char*, Unbound_Model, Linear_FE_Model*)’:
read_parameter_library.cpp:207:18: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister]
  207 |     register int counter = 0;
      |                  ^~~~~~~
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-mingw_getrusage.o `test -f 'mingw_getrusage.cpp' || echo './'`mingw_getrusage.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-calc_vina_potential.o `test -f 'calc_vina_potential.cpp' || echo './'`calc_vina_potential.cpp
g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.6\" -DPACKAGE_STRING=\"autogrid\ 4.2.6\" -DPACKAGE_BUGREPORT=\"autodock@scripps.edu\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.6\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPID=1 -DHAVE_FCHMOD=1 -DHAVE_SETLINEBUF=1 -DHAVE_SYSCONF=1 -DHAVE_TIMES=1 -DHAVE_GETRUSAGE=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I . -I./../autodock -Wno-write-strings -DUSE_8A_NBCUTOFF -DUSE_DOUBLE   -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection  -c -o autogrid4-stop.o `test -f 'stop.cpp' || echo './'`stop.cpp
calc_vina_potential.cpp: In function ‘int calc_vina_potential(int, const char (*)[3], int, const char (*)[3], EnergyTables*)’:
calc_vina_potential.cpp:110:9: warning: variable ‘hydrogen’ set but not used [-Wunused-but-set-variable]
  110 |     int hydrogen=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:113:9: warning: variable ‘oxygen’ set but not used [-Wunused-but-set-variable]
  113 |     int oxygen=-1;
      |         ^~~~~~
calc_vina_potential.cpp:114:9: warning: variable ‘nitrogen’ set but not used [-Wunused-but-set-variable]
  114 |     int nitrogen=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:115:9: warning: variable ‘fluorine’ set but not used [-Wunused-but-set-variable]
  115 |     int fluorine=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:116:9: warning: variable ‘chlorine’ set but not used [-Wunused-but-set-variable]
  116 |     int chlorine=-1;
      |         ^~~~~~~~
calc_vina_potential.cpp:117:9: warning: variable ‘bromine’ set but not used [-Wunused-but-set-variable]
  117 |     int bromine=-1;
      |         ^~~~~~~
calc_vina_potential.cpp:118:9: warning: variable ‘iodine’ set but not used [-Wunused-but-set-variable]
  118 |     int iodine=-1;
      |         ^~~~~~
calc_vina_potential.cpp:283:56: warning: array subscript 16384 is above array bounds of ‘Real[14][14]’ [-Warray-bounds=]
  283 |      printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]);
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~^
In file included from atom_parameter_manager.h:30,
                 from calc_vina_potential.cpp:26:
./../autodock/structs.h:260:10: note: while referencing ‘e_vdW_Hb’
  260 |     Real e_vdW_Hb[NEINT][MAX_ATOM_TYPES][MAX_ATOM_TYPES];  // vdW & Hb energies
      |          ^~~~~~~~
In file included from /usr/include/stdio.h:970,
                 from ./../autodock/autocomm.h:35,
                 from autogrid.h:27,
                 from calc_vina_potential.cpp:25:
In function ‘printf’,
    inlined from ‘calc_vina_potential(int, char const (*) [3], int, char const (*) [3], energy_tables*)’ at calc_vina_potential.cpp:284:12:
/usr/include/bits/stdio2.h:118:23: warning: ‘rddist’ may be used uninitialized [-Wmaybe-uninitialized]
  118 |   return __printf_chk (__USE_FORTIFY_LEVEL - 1, __fmt, __va_arg_pack ());
      |          ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
calc_vina_potential.cpp: In function ‘calc_vina_potential(int, char const (*) [3], int, char const (*) [3], energy_tables*)’:
calc_vina_potential.cpp:57:12: note: ‘rddist’ was declared here
   57 |     double rddist;
      |            ^~~~~~
calc_vina_potential.cpp:283:12: warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized]
  283 |      printf("last value=%f\n", p_et->e_vdW_Hb[i][indx_r][ia]);
      |      ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
calc_vina_potential.cpp:60:13: note: ‘i’ was declared here
   60 |     int ia, i,   indx_r;
      |             ^
g++  -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection   -Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o autogrid4-mingw_getrusage.o autogrid4-calc_vina_potential.o autogrid4-stop.o  -lm 
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.uUg3yy
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ '[' /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
++ dirname /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/autodocksuite-4.2.6-build
+ mkdir /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -m64 -march=z13 -mtune=z14 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd src
+ make -C autodock install DESTDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
make: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make  install-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make[2]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
 /usr/bin/mkdir -p '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
  /usr/bin/install -c autodock4 autodock4.omp '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
make: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock'
+ make -C autogrid install DESTDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
make: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make  install-am
make[1]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make[2]: Entering directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
 /usr/bin/mkdir -p '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
  /usr/bin/install -c autogrid4 '/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/bin'
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make[1]: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
make: Leaving directory '/builddir/build/BUILD/autodocksuite-4.2.6-build/src/autogrid'
+ rm -f /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT//usr/bin/autodock4.omp
+ /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 4.2.6-23.fc42 --unique-debug-suffix -4.2.6-23.fc42.s390x --unique-debug-src-base autodocksuite-4.2.6-23.fc42.s390x --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/autodocksuite-4.2.6-build/src
find-debuginfo: starting
Extracting debug info from 2 files
DWARF-compressing 2 files
sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/autodocksuite-4.2.6-23.fc42.s390x
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
+ /usr/lib/rpm/brp-remove-la-files
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
Scanned 13 directories and 218 files,
               processed 0 inodes,
               0 modified (0 replaced + 0 rewritten),
               0 unsupported format, 0 errors
Reading /builddir/build/BUILD/autodocksuite-4.2.6-build/SPECPARTS/rpm-debuginfo.specpart
Processing files: autodocksuite-4.2.6-23.fc42.s390x
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.A0CVjh
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ cd src
+ LICENSEDIR=/builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ cp -pr /builddir/build/BUILD/autodocksuite-4.2.6-build/src/autodock/COPYING /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT/usr/share/licenses/autodocksuite
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: autodocksuite = 4.2.6-23.fc42 autodocksuite(s390-64) = 4.2.6-23.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.2)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.3.1)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) rtld(GNU_HASH)
Processing files: autodocksuite-debugsource-4.2.6-23.fc42.s390x
Provides: autodocksuite-debugsource = 4.2.6-23.fc42 autodocksuite-debugsource(s390-64) = 4.2.6-23.fc42
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: autodocksuite-debuginfo-4.2.6-23.fc42.s390x
Provides: autodocksuite-debuginfo = 4.2.6-23.fc42 autodocksuite-debuginfo(s390-64) = 4.2.6-23.fc42 debuginfo(build-id) = 5a28327b61c5d878dbc95fa9b84de1dd2d233192 debuginfo(build-id) = dc30318d968a749e5264e8dd9a98fa4ac68dfdab
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: autodocksuite-debugsource(s390-64) = 4.2.6-23.fc42
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/autodocksuite-4.2.6-build/BUILDROOT
Wrote: /builddir/build/RPMS/autodocksuite-debuginfo-4.2.6-23.fc42.s390x.rpm
Wrote: /builddir/build/RPMS/autodocksuite-4.2.6-23.fc42.s390x.rpm
Wrote: /builddir/build/RPMS/autodocksuite-debugsource-4.2.6-23.fc42.s390x.rpm
Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.8NvXtq
+ umask 022
+ cd /builddir/build/BUILD/autodocksuite-4.2.6-build
+ test -d /builddir/build/BUILD/autodocksuite-4.2.6-build
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/autodocksuite-4.2.6-build
+ rm -rf /builddir/build/BUILD/autodocksuite-4.2.6-build
+ RPM_EC=0
++ jobs -p
+ exit 0
Finish: rpmbuild autodocksuite-4.2.6-23.fc42.src.rpm
Finish: build phase for autodocksuite-4.2.6-23.fc42.src.rpm
INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan
INFO: /var/lib/mock/fedora-rawhide-s390x-1734635205.561201/root/var/log/dnf5.log
INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz
/bin/tar: Removing leading `/' from member names
INFO: Done(/var/lib/copr-rpmbuild/results/autodocksuite-4.2.6-23.fc42.src.rpm) Config(child) 0 minutes 57 seconds
INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results
INFO: Cleaning up build root ('cleanup_on_success=True')
Start: clean chroot
INFO: unmounting tmpfs.
Finish: clean chroot
Finish: run
Running RPMResults tool
Package info:
{
    "packages": [
        {
            "name": "autodocksuite",
            "epoch": null,
            "version": "4.2.6",
            "release": "23.fc42",
            "arch": "src"
        },
        {
            "name": "autodocksuite-debuginfo",
            "epoch": null,
            "version": "4.2.6",
            "release": "23.fc42",
            "arch": "s390x"
        },
        {
            "name": "autodocksuite-debugsource",
            "epoch": null,
            "version": "4.2.6",
            "release": "23.fc42",
            "arch": "s390x"
        },
        {
            "name": "autodocksuite",
            "epoch": null,
            "version": "4.2.6",
            "release": "23.fc42",
            "arch": "s390x"
        }
    ]
}
RPMResults finished