<!– ============================================================= –> <!– MODULE: Article Authoring DTD –> <!– VERSION: ANSI/NISO JATS Version 1.2d2 (Z39.96-2015) –> <!– DATE: December 2017 –> <!– –> <!– ============================================================= –>

<!– ============================================================= –> <!– PUBLIC DOCUMENT TYPE DEFINITION –> <!– TYPICAL INVOCATION –> <!– “-//NLM//DTD JATS (Z39.96) Article Authoring DTD with MathML3 v1.2d2 20180401//EN”

Delivered as file "JATS-articleauthoring1-mathml3.dtd"
Available at:
http://jats.nlm.nih.gov/articleauthoring/1.1/JATS-articleauthoring1.dtd
                                                              -->

<!– ============================================================= –>

<!– ============================================================= –> <!– SYSTEM: Article Authoring DTD of the JATS DTD Suite –>

<!– –> <!– PURPOSE: DTD for creation of new journal articles –> <!– –> <!– The Article Authoring DTD is an application of –> <!– the ANSI/NISO Z39.96 Article Authoring Tag Set. –> <!– It is a subset of the Journal Archiving and –> <!– Interchange DTD that is optimized for the –> <!– authoring (or initial XML tagging) of journal –> <!– articles and some non-article material such as –> <!– product and book reviews. It describes both the –> <!– metadata for a journal article and the full –> <!– content of the article. –> <!– –> <!– This DTD was constructed using the modules in the –> <!– JATS DTD Suite. –> <!– –> <!– TAG SET SPONSOR –> <!– National Center for Biotechnology –> <!– Information (NCBI) –> <!– National Library of Medicine (NLM) –> <!– –> <!– CREATED FOR: –> <!– This DTD was created from the JATS DTD Suite. –> <!– Authors, digital archives, and publishers may –> <!– use the DTD as is for markup of journal –> <!– literature or related material for archiving –> <!– and transferring such material between archives –> <!– or create a custom XML DTD from the Suite for –> <!– these purposes. –> <!– –> <!– This DTD is in the public domain. An organization –> <!– that wishes to create its own DTD from the suite –> <!– may do so without permission from NLM. –> <!– –> <!– The suite has been set up to be extended using a –> <!– new DTD file and a new DTD-specific customization –> <!– module to redefine the many Parameter Entities. –> <!– Do not modify the suite directly or redistribute –> <!– modified versions of the suite. –> <!– –> <!– In the interest of maintaining consistency and –> <!– clarity for potential users, NLM requests: –> <!– –> <!– 1. If you create a DTD from the JATS DTD Suite –> <!– and intend to stay compatible with the suite, –> <!– then please include the following statement –> <!– as a comment in all of your DTD modules: –> <!– “Created from, and fully compatible with, –> <!– the ANSI/NISO Z39.96 Journal Article Tag –> <!– Suite (JATS).” –> <!– –> <!– 2. If you alter one or more modules of the suite, –> <!– then please rename your version and all its –> <!– modules to avoid any confusion with the –> <!– original suite. Also, please include the –> <!– following statement as a comment in all your –> <!– DTD modules: –> <!– “Based in part on, but not fully compatible –> <!– with, the ANSI/NISO Z39.96 Journal Article –> <!– Tag Suite (JATS).” –> <!– –> <!– ORIGINAL CREATION DATE: –> <!– June 2005 –> <!– –> <!– CREATED BY: Mulberry Technologies, Inc. for the NISO Z39.96 –> <!– Working Group. Mulberry Technologies was –> <!– supported by National Center for Biotechnology –> <!– Information (NCBI), a center of the US National –> <!– Library of Medicine (NLM). –> <!– –> <!– The Article Authoring DTD is built from the –> <!– Archiving and Interchange DTD Suite. –> <!– –> <!– Suggestions for refinements and enhancements to –> <!– this DTD should be sent in email to: –> <!– jats@ncbi.nlm.nih.gov –> <!– ============================================================= –>

<!– ============================================================= –> <!– DTD VERSIONCHANGE HISTORY –> <!– ============================================================= –> <!–

Version Reason/Occasion (who) vx.x (yyyy-mm-dd)

   =============================================================
    BITS Version 2.1                (DAL/BTU) v2.1    (2018-04-01)
    JATS Version 1.2d2              (DAL/BTU) v1.2d2  (2018-04-01)

    JATS is a continuing maintenance NISO Standard, which
    requires voting by the ANSI and NISO memberships to be changed. 
    BITS is under continuous maintenance, and is modified at the
    discretion of the working group.

    This draft DTD represents an interim version of the
    non-normative JATS DTD Suite, as an indication to JATS users
    the decisions that have been made by the JATS Standing
    Committee. This draft has not yet been given public review 
    or voting. The formal public identifiers were changed in the 
    modules and the catalogs.

22. INLINE INDEX TERMS  - Added invocation to BITS inline
    (embedded) index term model

21. @dtd-version becomes "1.2d2" from "1.2d1"

20. BITS "2.0" and "v2.0 20151225" became
    BITS "2.1" and "v2.1 20180401". 

    JATS "1.2d1" and "v1.2d1 20171231" became
    JATS "1.2d2" and "v1.2d2 20180401". 

    No module names were changed.

   =============================================================
    JATS Version 1.2d1 (ANSI/NISO Z39.96-2015)
                                  (DAL/BTU) v1.2d1  (2017-12-31)

    NISO JATS is a continuing maintenance NISO Standard, which
    requires voting by the ANSI and NISO memberships to be changed. 

    This draft DTD represents an interim version of the
    non-normative JATS DTD Suite, as an indication to JATS users
    the decisions that have been made by the JATS Standing
    Committee. This draft has not yet been given public review 
    or voting. The formal public identifiers were changed in the 
    modules and the catalogs.

19. JATS "1.2d1" and "v1.2d1 20170631" became
    JATS "1.2d1" and "v1.2d1 20171231". 

   =============================================================
    JATS Version 1.2d1              (DAL/BTU) v1.2d1  (2017-06-31)

    NISO JATS is a continuing maintenance NISO Standard, which
    requires voting by the ANSI and NISO memberships to be changed. 

    This draft DTD represents an interim version of the
    non-normative JATS DTD Suite, as an indication to JATS users
    the decisions that have been made by the JATS Standing
    Committee. This draft has not yet been given public review 
    or voting. The formal public identifiers were changed in the 
    modules and the catalogs.

18. xsi:noNamespaceSchemaLocation added to attribute list of
    <article>. Most modern processors do not need this, but
    a user with an older processor requested it, so the JATS
    Standing Committee acquiesced. This pseudo-attribute
    cannot be used with a DOCTYPE declaration.

17. @dtd-version becomes "1.2d1" from 1.1

16. JATS became version "1.2d1" and "v1.2d1 20170631" 

   =============================================================
    JATS Version 1.1                (DAL/BTU) v1.1  (2015-12-15)

    JATS is a continuing maintenance NISO Standard, which
    requires voting by the ANSI and NISO memberships to be changed. 
    JATS 1.1 was approved in late 2015, so the formal public 
    identifiers were changed in the modules and the catalogs.
    No model or attribute changes were made at this time. 

15. JATS became version "1.1" and "v1.1 20151215"

    =============================================================
    JATS Version 1.1d3             (DAL/BTU) v1.1d3  (2015-03-01)

    The changes in this release are in response to NISO 
    License and Indicators Recommended Practice.

    NISO JATS is a continuing maintenance NISO Standard, which 
    requires voting by the NISO membership to be changed. This
    Committee Draft 1.1d3 will be sent to the NISO voting
    membership, to become (if approved) NISO JATS 1.1.

    This draft DTD represents an interim version of the
    non-normative JATS DTD Suite, as an indication to JATS users
    the decisions that have been made by the JATS Standing
    Committee.

14. ALI - Added ALI namespace for NISO Access and Indicator 
    license reference and free to read elements.

13. JATS became version "1.1d3" and "v1.1d3 20150301"

    =============================================================
    JATS Version 1.1d2             (DAL/BTU) v1.1d2  (2014-09-30)

    NISO JATS is a continuing maintenance NISO Standard, which 
    requires voting by the NISO membership to be changed. This
    Committee Draft 1.1d2 will be sent to the NISO voting
    membership, to become (if approved) NISO JATS 1.1.

    This catalog represents an interim version of the
    non-normative JATS DTD Suite, as an indication to JATS users
    the decisions that have been made by the JATS Standing
    Committee.

12. JATS became version "1.1d2" and "v1.1d2 20140930//EN"

    =============================================================
    NISO JATS Version 1.1d1           (DAL/BTU) v1.1 (2013-11-15)

    ANSI/NISO Z39.96-2012 (pre-release for V1.0 BITS; Version 1.1d1) 

    NISO JATS Standing Committee met and answered the requests and
    suggestions from the NISO request forms.

    Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,  
    XSDs, RNGs and supporting documentation are available at
          http://jats.nlm.nih.gov/1.0/

11. MATHML 3.0 - Created a new version of the Authoring DTD to
    take MathML 3.0 instead of MathML 2.0.
    Nothing else changed from regular Authoring DTD.
    Call to MathML setup module changed and added call to the
    specific MathML 3.0 modules.

10. DTD Version - Updated the DTD-version attribute to "1.1d1" and 
    the formal public identifier to the date: "v1.1d1 20130915//EN".

 9. GLOBAL ATTRIBUTES - Added the new module for Common (global)
    attributes: %JATS-common-atts.ent;, called in before the
    customizations models module.

 8. GLOBAL ATTRIBUTES - Added the new parameter entity 
        %jats-common-atts;
    to every element in this module. This PE adds (for now) the
    @id attribute and the @xml:base attribute to every element,
    whether metadata or narrative.
    Since the @id in this parameter entity is optional, a second
    parameter entity jats-common-atts-id-required was also added.
    The two are kept in sync with the jats-base-atts parameter 
    entity.
    This added a new attribute list to:
     - back
     - body
     - front

    =============================================================
    NISO JATS Version 1.0             (DAL/BTU) v1.0 (2012-xx-xx)

    ANSI/NISO Z39.96-2012 (Version 1.0) 

    Details concerning ANSI/NISO Z39.96-2012 JATS-based DTDs,  
    XSDs, RNGs and supporting documentation are available at
          http://jats.nlm.nih.gov/1.0/

 7. Fixed content models that were stated as "P*" and "sec*"
    to use the %just-para.class; and %sec.class; classes. 
    Element models that were changed include:
     - back

    =============================================================
    Version 0.4                       (DAL/BTU) v0.4 (2011-01-31)

    This Tag Set is in the process of becoming a NISO standard.
    The version numbers are starting over from 0.4", as a Trial
    Use Draft, to be made into "Version 1.0" when the Tag Suite 
    becomes a NISO standard. Thus, the version number that would
    have been "NLM Version 3.1 Draft" has become NISO JATS
    "Version 0.4".

    Details on NISO Trial Use Draft Version 0.4 are available at
          http://jats.nlm.nih.gov/JATS-0.4.

 6. Updated the DTD-version attribute to "0.4" 

 5. Updated the public identifier to "v0.4 20110131", 
    modified the formal public identifier to include "JATS (Z39.96)",
    and the filename as delivered to include "JATS" and the
    new version number "0".
          http://jats.nlm.nih.gov/0.4.

 4. XML:LANG - Added @xml:lang to the following elements:
    Added to facilitate multiple languages.
      - article

 3. LANGUAGE CODES - Codes for languages as well as variants,
    transliterations, regions, scripts, and combinations
    such as "Jpan"(Han + Hiragana + Katakana). These values should be
    taken from RFC 5646/W3C/IANA Subtag Registry recommendations
    and can be found online at:
      http://www.iana.org/assignments/language-subtag-registry

    =============================================================
    Version 3.0                       (DAL/BTU) v3.0 (2007-10-31)

    Version 3.0 is the first non-backward-compatible release.
    In addition to the usual incremental changes, some
    elements and attributes have been renamed and/or remodeled
    to better meet user needs and to increase tag set consistency.
    All module change histories are available through the Tag Suite
    web site at http://dtd.nlm.nih.gov.

    Details on version 3.0 are available at
          http://dtd.nlm.nih.gov/3.0.

 2. Changed default @xml:lang from "EN" from "en" to match latest
    RFC 4646/W3C/IANA Subtag Registry recommendations

 1. Updated public identifier to "v3.0 20080202//EN"              -->

<!– ============================================================= –> <!– Details concerning

ANSI/NISO Z39.96-2015 JATS-based DTDs, XSDs, 
RNGs and supporting documentation are available at
      http://jats.nlm.nih.gov/1.1/                            -->

<!– ============================================================= –> <!– DESIGN CONSIDERATIONS –> <!– ============================================================= –>

<!– MODULAR DTD LIBRARY

A set of journal archiving and interchange
DTD modules was written as the basis for
article creation, publishing, interchange,
and repository DTDs, with the intention that
DTDs for specific purposes, such as this
Authoring  DTD, would be developed based on
them.
This Authoring DTD has been optimized for
the creation of new journal articles by
individual authors. This means that it lacks
all the journal-related material (such as
the journal metadata) that are not the
responsibility of the author but of the
publisher. This DTD is also smaller (fewer
elements and fewer choices in many contexts)
than either the Publishing or Archiving DTDs.
It was not the intention to limit the
expressive power licensed by the DTD, but
rather to limit the many paths where there
are several ways to tag the same material,
where an archiving or publishing DTD needs to
be able to accept all styles.              -->

<!– ============================================================= –> <!– MODULE OF MODULES INVOKED –> <!– ============================================================= –>

<!– MODULE TO NAME DTD-SPECIFIC MODULES –> <!– Names all DTD-specific external modules –> <!ENTITY % articleauthcustom-modules.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) Article Authoring DTD-Specific Modules v1.2d2 20180401//EN” “JATS-articleauthcustom-modules1.ent” > %articleauthcustom-modules.ent;

<!– MODULE TO NAME THE MATHML 3.0 MODULES –> <!– Names all DTD-specific external modules –> <!ENTITY % mathml3-modules.ent

PUBLIC

“-//NLM//DTD JATS (Z39.96) JATS MathML 3.0 Modules v1.2d2 20180401//EN” “JATS-mathml3-modules1.ent” > %mathml3-modules.ent;

<!– MODULE TO NAME THE MODULES –> <!– Names all the external modules (except

itself and the Customization Module) that
are part of the modular JATS DTD Suite 
library.
   This DTD then selects from those
modules by referencing the external
Parameter Entities defined in the Module of
Modules. To include a set of elements (such
as all the lists or the table elements) this
DTD references the external Parameter Entity
of the module that contains the declarations.
                                           -->

<!ENTITY % modules.ent PUBLIC “-//NLM//DTD JATS (Z39.96) JATS DTD Suite Module of Modules v1.2d2 20180401//EN” “JATS-modules1.ent” > %modules.ent;

<!– ============================================================= –> <!– NISO ALI NAMESPACE SETUP –> <!– ============================================================= –>

<!– DEFINE ALI NAMESPACE ATTRIBUTE AND PREFIX –> <!– Names the module defines the NISO Access and

Indicators Exchange Model namespace, prefix, 
and pseudo-attribute @xmlns.               -->

%JATS-ali-namespace.ent;

<!– ============================================================= –> <!– SET UP COMMON (ALL ELEMENT) ATTRIBUTES –> <!– ============================================================= –>

<!– COMMON ATTRIBUTES MODULE –> <!– Set up the common attributes, those used on

nearly all elements.
Must be called before the custom models
module.                                    -->

%JATS-common-atts.ent;

<!– ============================================================= –> <!– CUSTOMIZATION MODULES INVOKED –> <!– Note: These modules must be called after –> <!– all Module of Modules but before any other –> <!– modules. Unlike any other grouping, order –> <!– of these modules matters. –> <!– ============================================================= –>

<!– DTD-SPECIFIC CLASS CUSTOMIZATIONS MODULE –> <!– Names the module that holds the DTD-specific

class definitions for the Article Authoring
DTD that will over-ride the Suite defaults.
(Defined in %articleauthcustom-modules.ent; )
                                           -->

%articleauthcustom-classes.ent;

<!– DEFAULT ELEMENT CLASSES MODULE –> <!– Names the module that holds the standard

class definitions for the JATS DTD Suite.  -->

%default-classes.ent;

<!– DTD-SPECIFIC MIX CUSTOMIZATIONS MODULE –> <!– Set up the Parameter Entities and element

class definitions that will be used to
over-ride some element mixes in this DTD.
(Defined in %articleauthcustom-modules.ent;)  
                                           -->

%articleauthcustom-mixes.ent;

<!– DEFAULT MIX CUSTOMIZATIONS MODULE –> <!– Names the module that holds the standard

mix definitions for the JATS DTD Suite.    -->

%default-mixes.ent;

<!– DTD-SPECIFIC MODELS/ATTRIBUTES CUSTOMIZATIONS

MODULE                                     -->

<!– Names the module that holds the over-rides

of content models, attribute lists, elements
lists to be used in content models, and
attribute values. These are DTD-specific.
(Defined in %articleauthcustom-modules.ent; )  
                                           -->

%articleauthcustom-models.ent;

<!– ============================================================= –> <!– COMMON (SHARED) ELEMENTS MODULE INVOKED –> <!– ============================================================= –>

<!– COMMON (SHARED) DECLARATIONS –> <!– Declarations for elements, attributes,

entities, and Notations that are shared by
more than one class module. Note: Must be
called before any of the class modules.    -->

%common.ent;

<!– ============================================================= –> <!– JOURNAL ARTICLE CLASS ELEMENTS (alpha) –> <!– ============================================================= –>

<!– ARTICLE METADATA ELEMENTS –> %articlemeta.ent;

<!– BACK MATTER ELEMENTS –> %backmatter.ent;

<!– DISPLAY (GRAPHICAL) ELEMENTS –> %display.ent;

<!– FORMATTING ELEMENTS –> <!– Elements that change rendition/display. –> %format.ent;

<!– FUNDING ELEMENTS –> <!– Elements that describe the sponsorship or

open access                                -->

%funding.ent;

<!– LINK CLASS ELEMENTS –> %link.ent;

<!– LIST CLASS ELEMENTS –> %list.ent;

<!– MATH ELEMENTS –> %math.ent;

<!– NLM CITATION ELEMENT –> %nlmcitation.ent;

<!– PARAGRAPH-LEVEL ELEMENTS –> %para.ent;

<!– PHRASE-LEVEL ELEMENTS –> %phrase.ent;

<!– BIBLIOGRAPHIC REFERENCE (CITATION)

CLASS ELEMENTS                             -->

%references.ent;

<!– RELATED OBJECT ELEMENT –> <!– Defines the <related-object> element to

describe a related object such as a
related book or a dataset.                 -->

%related-object.ent;

<!– SECTION ELEMENTS –> %section.ent;

<!– ============================================================= –> <!– THE REST OF THE EXTERNAL MODULES INVOKED –> <!– ============================================================= –>

<!– BITS EMBEDDED INDEX ELEMENTS MODULE –> <!– Element declarations the index elements

which are embedded in the article 
narrative.                                 -->

%index-term.ent;

<!– ============================================================= –> <!– THE REST OF THE EXTERNAL MODULES INVOKED –> <!– ============================================================= –>

<!– MATHML SETUP MODULE –> <!– Invoke the MathML modules –> %mathml3-mathmlsetup.ent;

<!– XHTML TABLE SETUP MODULE –> <!– Set up the necessary Parameter Entity values

and then invoke XHTML (HTML 4.0) table
module                                     -->

%XHTMLtablesetup.ent;

<!– SPECIAL CHARACTERS DECLARATIONS –> <!– Standard XML special character entities

used in this DTD                           -->

%xmlspecchars.ent;

<!– CUSTOM SPECIAL CHARACTERS DECLARATIONS –> <!– Custom special character entities created

specifically for use in this DTD Suite     -->

%chars.ent;

<!– NOTATION DECLARATIONS MODULE –> %notat.ent; <!– ============================================================= –>

<!– ============================================================= –> <!– PARAMETER ENTITIES FOR ATTRIBUTE LISTS –> <!– ============================================================= –>

<!– DTD VERSION –> <!– What version of this DTD was used to make

the document instance under consideration.
Note that this is a fixed value that should
change every time the DTD changes versions or
revisions.                                 -->

<!ENTITY % dtd-version

"dtd-version
            CDATA                      #FIXED '1.2d2'"   >

<!– ARTICLE ATTRIBUTES –> <!– Attributes for the top-level element

<article>                                  -->

<!ENTITY % article-atts

"%jats-common-atts;                                       
 article-type
            CDATA                             #IMPLIED
 %dtd-version;
 specific-use
            CDATA                             #IMPLIED
 xml:lang   NMTOKEN                           'en'
 %XLINK.xmlns.attrib;
 %MATHML.xmlns.attrib;
 %ali.xmlns.attrib;
 %Schema.xmlns.attrib; 
 %Schema.prefix;:noNamespaceSchemaLocation   
            CDATA          #IMPLIED"                    >

<!– BACK ATTRIBUTES –> <!– Attributes for the <back> element –> <!ENTITY % back-atts

"%jats-common-atts;"                                     >

<!– BODY ATTRIBUTES –> <!– Attributes for the <body> element –> <!ENTITY % body-atts

"%jats-common-atts;"                                     >

<!– FRONT ATTRIBUTES –> <!– Attributes for the <front> element –> <!ENTITY % front-atts

"%jats-common-atts;"                                     >

<!– ============================================================= –> <!– JOURNAL ARTICLE ELEMENTS –> <!– ============================================================= –>

<!– ARTICLE MODEL (LIMITED) –> <!ENTITY % article-short-model

"(front, body, back?)"                       >

<!– ARTICLE –> <!– The complete content of a journal article.

Details at:
http://jats.nlm.nih.gov/articleauthoring/tag-library/1.2d2/index.html?elem=article
                                           -->

<!ELEMENT article %article-short-model; > <!ATTLIST article

%article-atts;                                          >

<!– ============================================================= –> <!– FRONT MATTER ELEMENTS –> <!– ============================================================= –>

<!– FRONT MATTER MODEL –> <!ENTITY % front-model “(article-meta)” >

<!– FRONT MATTER –> <!– The metadata concerning an article, such as

the name and issue of the journal in which it
appears and the name and author(s) of the
article.
Details at:
http://jats.nlm.nih.gov/articleauthoring/tag-library/1.2d2/index.html?elem=front
                                           -->

<!ELEMENT front %front-model; > <!ATTLIST front

%front-atts;                                            >

<!– ============================================================= –> <!– BODY ELEMENTS –> <!– ============================================================= –>

<!– BODY MODEL –> <!– Content model for the Body (main textual

content) of a journal article.             -->

<!ENTITY % body-model “((%para-level;)*, (%sec-level;)*)” >

<!– BODY OF THE ARTICLE –> <!– The main textual portion of the article that

conveys the content.
Details at:
http://jats.nlm.nih.gov/articleauthoring/tag-library/1.2d2/index.html?elem=body
                                           -->

<!ELEMENT body %body-model; > <!ATTLIST body

%body-atts;                                             >

<!– ============================================================= –> <!– BACK MATTER ELEMENTS –> <!– ============================================================= –>

<!– BACK MATTER MODEL –> <!– Content model for the Back Matter (ancillary

material such as appendices) of a journal
article.                                   -->

<!ENTITY % back-model “(ack?, glossary?, (%ref-list.class;)*,

app-group?)"                               >

<!– BACK MATTER –> <!– Ancillary or supporting material not included

as part of the main textual content of a
journal article, for example appendices and
acknowledgments.
Details at:
http://jats.nlm.nih.gov/articleauthoring/tag-library/1.2d2/index.html?elem=back
                                           -->

<!ELEMENT back %back-model; > <!ATTLIST back

%back-atts;                                             >

<!– ================== End Article Authoring DTD ================ –>