class MS::Sequest::Sqt::Match

rxcorr = rank by xcorr rsp = rank by sp NOTE: deltacn_orig deltacn is the adjusted deltacn (like Bioworks - shift all scores up and give the last one 1.1)

Constants

Leader

Public Instance Methods

from_line(line) click to toggle source
# File lib/ms/sequest/sqt.rb, line 328
def from_line(line)
  line.chomp!
  ar = line.split(MS::Sequest::Sqt::Delimiter)
  self[0] = ar[1].to_i
  self[1] = ar[2].to_i
  self[2] = ar[3].to_f
  self[3] = ar[4].to_f
  self[4] = ar[5].to_f
  self[5] = ar[6].to_f
  self[6] = ar[7].to_i
  self[7] = ar[8].to_i
  self[8] = ar[9]
  self[9] = ar[10]
  self[14] = MS::Ident::Peptide.sequence_to_aaseq(self[8])
  self
end
proteins() click to toggle source

same as ‘loci’

# File lib/ms/sequest/sqt.rb, line 324
def proteins
  self[16]
end