class Bio::Conduit::Samples
Attributes
groups[R]
resources[R]
samples[R]
Public Class Methods
new(filename)
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# File lib/bio/conduit/samples.rb, line 15 def initialize(filename) yaml = YAML::load(File.open(filename)) @samples = {} @groups = {} if yaml.has_key?("resources") @resources = yaml["resources"] else @resources = {} end if yaml.has_key?("samples") yaml["samples"].each_pair do |l1k, l1v| if l1v.is_a?(Hash) l1v.each_pair do |k, v| @samples[k] = {} @samples[k]['name'] = k @samples[k]['path'] = v @samples[k]["resources"] = @resources @samples[k]["group"] = l1k @groups[l1k] ||= [] @groups[l1k].push(@samples[k]) end else @samples[l1k] = {} @samples[l1k]['name'] = l1k @samples[l1k]['path'] = l1v @samples[l1k]["resources"] = @resources end end end end
Public Instance Methods
[](name)
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# File lib/bio/conduit/samples.rb, line 50 def [](name) @samples[name] end
each(&block)
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# File lib/bio/conduit/samples.rb, line 54 def each(&block) @samples.each do |sam| block.call(sam) end end