class PbsJob::New
Constants
- EXECUTABLE_PERMISSIONS
- STREAMS_DIR_NAME
Public Class Methods
source_root()
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# File lib/pbs_job.rb, line 101 def self.source_root File.expand_path('../../', __FILE__) end
Public Instance Methods
gen_pbs_script()
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# File lib/pbs_job.rb, line 107 def gen_pbs_script() create_script_from_template('job.pbs') end
gen_qsub_script()
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# File lib/pbs_job.rb, line 106 def gen_qsub_script() create_script_from_template('job.qsub') end
gen_results_dir()
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# File lib/pbs_job.rb, line 110 def gen_results_dir results_path = File.join full_name, 'results' if options[:link_results] create_link(results_path, options[:link_results]) else empty_directory results_path end end
gen_root()
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# File lib/pbs_job.rb, line 105 def gen_root() empty_directory(full_name) end
gen_streams_dir()
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# File lib/pbs_job.rb, line 109 def gen_streams_dir() empty_directory(streams_path) end
gen_task_script()
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# File lib/pbs_job.rb, line 108 def gen_task_script() create_script_from_template('task') end
Private Instance Methods
abs_job_root()
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# File lib/pbs_job.rb, line 146 def abs_job_root @abs_job_root ||= File.expand_path(full_name) end
abs_stream_prefix()
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# File lib/pbs_job.rb, line 154 def abs_stream_prefix @abs_stream_prefix ||= File.join abs_job_root, STREAMS_DIR_NAME, File.basename(full_name) end
create_file_from_template(file_name)
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# File lib/pbs_job.rb, line 125 def create_file_from_template(file_name) template( "templates/#{file_name}.tt", file_path(file_name) ) end
create_script_from_template(script_name)
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# File lib/pbs_job.rb, line 132 def create_script_from_template(script_name) create_file_from_template script_name chmod file_path(script_name), EXECUTABLE_PERMISSIONS end
file_path(script_name)
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# File lib/pbs_job.rb, line 121 def file_path(script_name) File.join full_name, script_name end
full_name()
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@returns [String] Name with date appended
# File lib/pbs_job.rb, line 138 def full_name @full_name ||= if options[:append_timestamp] "#{name}.#{DateTime.now.strftime('%b%d_%Y.%Hh-%Mm-%Ss')}" else name end end
record_task_execution_code()
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# File lib/pbs_job.rb, line 158 def record_task_execution_code @record_task_execution_code ||= <<-EOB set -x # Record commands to stderr # Record machine and user information uname -a whoami pwd EOB end
streams_path()
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# File lib/pbs_job.rb, line 150 def streams_path @streams_path ||= File.join full_name, STREAMS_DIR_NAME end