Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c14a' (ED25519) to the list of known hosts. You can reproduce this build on your computer by running: sudo dnf install copr-rpmbuild /usr/bin/copr-rpmbuild --verbose --drop-resultdir --task-url https://copr.fedorainfracloud.org/backend/get-build-task/8657601-fedora-41-x86_64 --chroot fedora-41-x86_64 Version: 1.2 PID: 28807 Logging PID: 28808 Task: {'allow_user_ssh': False, 'appstream': False, 'background': True, 'build_id': 8657601, 'buildroot_pkgs': ['fedora-clang-default-cc'], 'chroot': 'fedora-41-x86_64', 'enable_net': False, 'fedora_review': False, 'git_hash': '84f8ac5274a5149fd78b80cac03d047851a75e5a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/fedora-41-clang-21/openbabel', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'openbabel', 'package_version': '3.1.1-29', 'project_dirname': 'fedora-41-clang-21', 'project_name': 'fedora-41-clang-21', 'project_owner': '@fedora-llvm-team', 'repo_priority': None, 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/fedora-41-clang-21/fedora-41-x86_64/', 'id': 'copr_base', 'name': 'Copr repository', 'priority': None}, {'baseurl': 'https://download.copr.fedorainfracloud.org/results/tstellar/fedora-clang-default-cc/fedora-41-x86_64/', 'id': 'copr_tstellar_fedora_clang_default_cc', 'name': 'Additional repo copr_tstellar_fedora_clang_default_cc'}, {'baseurl': 'https://download.copr.fedorainfracloud.org/results/@fedora-llvm-team/llvm-snapshots-big-merge-20250213/fedora-41-x86_64/', 'id': 'copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213', 'module_hotfixes': True, 'name': 'Additional repo copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213'}], 'sandbox': '@fedora-llvm-team/fedora-41-clang-21--tstellar', 'source_json': {}, 'source_type': None, 'ssh_public_keys': None, 'storage': 0, 'submitter': 'tstellar', 'tags': [], 'task_id': '8657601-fedora-41-x86_64', 'timeout': 18000, 'uses_devel_repo': False, 'with_opts': ['toolchain_clang', 'clang_lto'], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/fedora-41-clang-21/openbabel /var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/@fedora-llvm-team/fedora-41-clang-21/openbabel', '/var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel'... Running: git checkout 84f8ac5274a5149fd78b80cac03d047851a75e5a -- cmd: ['git', 'checkout', '84f8ac5274a5149fd78b80cac03d047851a75e5a', '--'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel rc: 0 stdout: stderr: Note: switching to '84f8ac5274a5149fd78b80cac03d047851a75e5a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 84f8ac5 automatic import of openbabel Running: dist-git-client sources cmd: ['dist-git-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading openbabel-openbabel-3-1-1.tar.gz INFO: Reading stdout from command: curl --help all /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated INFO: Calling: curl -H Pragma: -o openbabel-openbabel-3-1-1.tar.gz --location --connect-timeout 60 --retry 3 --retry-delay 10 --remote-time --show-error --fail --retry-all-errors https://copr-dist-git.fedorainfracloud.org/repo/pkgs/@fedora-llvm-team/fedora-41-clang-21/openbabel/openbabel-openbabel-3-1-1.tar.gz/md5/7efb864d2ba5593b286ddc49d70aa851/openbabel-openbabel-3-1-1.tar.gz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 34.9M 100 34.9M 0 0 87.1M 0 --:--:-- --:--:-- --:--:-- 87.0M INFO: Reading stdout from command: md5sum openbabel-openbabel-3-1-1.tar.gz Running (timeout=18000): unbuffer mock --spec /var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1739594052.998728 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --with toolchain_clang --with clang_lto INFO: mock.py version 6.0 starting (python version = 3.13.0, NVR = mock-6.0-1.fc41), args: /usr/libexec/mock/mock --spec /var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel/openbabel.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1739594052.998728 -r /var/lib/copr-rpmbuild/results/configs/child.cfg --with toolchain_clang --with clang_lto Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel/openbabel.spec) Config(fedora-41-x86_64) Start: clean chroot Finish: clean chroot Mock Version: 6.0 INFO: Mock Version: 6.0 Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1739594052.998728/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: Guessed host environment type: unknown INFO: Using container image: registry.fedoraproject.org/fedora:41 INFO: Pulling image: registry.fedoraproject.org/fedora:41 INFO: Tagging container image as mock-bootstrap-f16658b0-9342-4e11-bfe0-cb7ee0655a1f INFO: Checking that db01c493fd9b02d2234320702949f37c483a3c4122814c75400755b5dcf019d4 image matches host's architecture INFO: Copy content of container db01c493fd9b02d2234320702949f37c483a3c4122814c75400755b5dcf019d4 to /var/lib/mock/fedora-41-x86_64-bootstrap-1739594052.998728/root INFO: mounting db01c493fd9b02d2234320702949f37c483a3c4122814c75400755b5dcf019d4 with podman image mount INFO: image db01c493fd9b02d2234320702949f37c483a3c4122814c75400755b5dcf019d4 as /var/lib/containers/storage/overlay/896bc20587a190a71e4026ed86729b22141bcd04002e06810998fbf95515e040/merged INFO: umounting image db01c493fd9b02d2234320702949f37c483a3c4122814c75400755b5dcf019d4 (/var/lib/containers/storage/overlay/896bc20587a190a71e4026ed86729b22141bcd04002e06810998fbf95515e040/merged) with podman image umount INFO: Removing image mock-bootstrap-f16658b0-9342-4e11-bfe0-cb7ee0655a1f INFO: Package manager dnf5 detected and used (fallback) INFO: Not updating bootstrap chroot, bootstrap_image_ready=True Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1739594052.998728/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Package manager dnf5 detected and used (direct choice) INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 dnf5-5.2.8.1-3.fc41.x86_64 dnf5-plugins-5.2.8.1-3.fc41.x86_64 Start: installing minimal buildroot with dnf5 Updating and loading repositories: updates 100% | 880.8 KiB/s | 31.7 KiB | 00m00s fedora 100% | 1.2 MiB/s | 32.1 KiB | 00m00s Copr repository 100% | 34.0 KiB/s | 1.5 KiB | 00m00s Additional repo copr_tstellar_fedora_c 100% | 52.1 KiB/s | 1.5 KiB | 00m00s Additional repo copr_fedora_llvm_team_ 100% | 36.3 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 4.3 MiB/s | 379.5 KiB | 00m00s Repositories loaded. Package Arch Version Repository Size Installing group/module packages: bash x86_64 5.2.32-1.fc41 fedora 8.2 MiB bzip2 x86_64 1.0.8-19.fc41 fedora 95.7 KiB coreutils x86_64 9.5-11.fc41 updates 5.7 MiB cpio x86_64 2.15-2.fc41 fedora 1.1 MiB diffutils x86_64 3.10-8.fc41 fedora 1.6 MiB fedora-release-common noarch 41-29 updates 19.7 KiB findutils x86_64 1:4.10.0-4.fc41 fedora 1.8 MiB gawk x86_64 5.3.0-4.fc41 fedora 1.7 MiB glibc-minimal-langpack x86_64 2.40-21.fc41 updates 0.0 B grep x86_64 3.11-9.fc41 fedora 1.0 MiB gzip x86_64 1.13-2.fc41 copr_base 400.9 KiB info x86_64 7.1-3.fc41 fedora 361.8 KiB patch x86_64 2.7.6-25.fc41 fedora 266.7 KiB redhat-rpm-config noarch 293-1.fc41 fedora 183.5 KiB rpm-build x86_64 4.20.0-1.fc41 fedora 194.3 KiB sed x86_64 4.9-3.fc41 fedora 861.5 KiB shadow-utils x86_64 2:4.15.1-12.fc41 fedora 4.1 MiB tar x86_64 2:1.35-4.fc41 fedora 2.9 MiB unzip x86_64 6.0-64.fc41 fedora 386.8 KiB util-linux x86_64 2.40.4-1.fc41 updates 3.6 MiB which x86_64 2.21-42.fc41 fedora 80.2 KiB xz x86_64 1:5.6.2-2.fc41 fedora 1.2 MiB Installing dependencies: add-determinism x86_64 0.3.6-3.fc41 updates 2.4 MiB alternatives x86_64 1.31-1.fc41 copr_base 66.1 KiB ansible-srpm-macros noarch 1-16.fc41 fedora 35.7 KiB audit-libs x86_64 4.0.3-1.fc41 updates 351.3 KiB authselect x86_64 1.5.0-8.fc41 copr_base 157.4 KiB authselect-libs x86_64 1.5.0-8.fc41 copr_base 822.2 KiB basesystem noarch 11-21.fc41 fedora 0.0 B binutils x86_64 2.43.1-5.fc41 updates 27.4 MiB build-reproducibility-srpm-macros noarch 0.3.6-3.fc41 updates 735.0 B bzip2-libs x86_64 1.0.8-19.fc41 fedora 80.7 KiB ca-certificates noarch 2024.2.69_v8.0.401-1.0.fc41 fedora 2.4 MiB coreutils-common x86_64 9.5-11.fc41 updates 11.2 MiB cracklib x86_64 2.9.11-6.fc41 fedora 238.9 KiB crypto-policies noarch 20250124-1.git4d262e7.fc41 updates 137.4 KiB curl x86_64 8.9.1-3.fc41 updates 793.5 KiB cyrus-sasl-lib x86_64 2.1.28-27.fc41 fedora 2.3 MiB debugedit x86_64 5.1-4.fc41 updates 197.7 KiB dwz x86_64 0.15-8.fc41 fedora 298.9 KiB ed x86_64 1.20.2-2.fc41 fedora 146.9 KiB efi-srpm-macros noarch 5-13.fc41 updates 40.2 KiB elfutils x86_64 0.192-7.fc41 updates 2.6 MiB elfutils-debuginfod-client x86_64 0.192-7.fc41 updates 81.4 KiB elfutils-default-yama-scope noarch 0.192-7.fc41 updates 1.8 KiB elfutils-libelf x86_64 0.192-7.fc41 updates 1.2 MiB elfutils-libs x86_64 0.192-7.fc41 updates 654.9 KiB fedora-gpg-keys noarch 41-1 fedora 126.4 KiB fedora-release noarch 41-29 updates 0.0 B fedora-release-identity-basic noarch 41-29 updates 682.0 B fedora-repos noarch 41-1 fedora 4.9 KiB file x86_64 5.45-7.fc41 fedora 103.5 KiB file-libs x86_64 5.45-7.fc41 fedora 9.9 MiB filesystem x86_64 3.18-23.fc41 fedora 106.0 B fonts-srpm-macros noarch 1:2.0.5-17.fc41 fedora 55.8 KiB forge-srpm-macros noarch 0.4.0-1.fc41 updates 38.9 KiB fpc-srpm-macros noarch 1.3-13.fc41 fedora 144.0 B gdb-minimal x86_64 15.2-4.fc41 updates 12.7 MiB gdbm x86_64 1:1.23-7.fc41 fedora 460.9 KiB gdbm-libs x86_64 1:1.23-7.fc41 fedora 121.9 KiB ghc-srpm-macros noarch 1.9.1-2.fc41 fedora 747.0 B glibc x86_64 2.40-21.fc41 updates 6.7 MiB glibc-common x86_64 2.40-21.fc41 updates 1.0 MiB glibc-gconv-extra x86_64 2.40-21.fc41 updates 7.9 MiB gmp x86_64 1:6.3.0-2.fc41 fedora 811.4 KiB gnat-srpm-macros noarch 6-6.fc41 fedora 1.0 KiB go-srpm-macros noarch 3.6.0-5.fc41 updates 60.8 KiB jansson x86_64 2.13.1-10.fc41 copr_base 104.4 KiB json-c x86_64 0.17-4.fc41 fedora 82.4 KiB kernel-srpm-macros noarch 1.0-24.fc41 fedora 1.9 KiB keyutils-libs x86_64 1.6.3-4.fc41 fedora 54.4 KiB krb5-libs x86_64 1.21.3-4.fc41 updates 2.3 MiB libacl x86_64 2.3.2-2.fc41 fedora 40.0 KiB libarchive x86_64 3.7.4-4.fc41 updates 926.6 KiB libattr x86_64 2.5.2-4.fc41 fedora 28.5 KiB libblkid x86_64 2.40.4-1.fc41 updates 257.2 KiB libbrotli x86_64 1.1.0-5.fc41 fedora 837.6 KiB libcap x86_64 2.70-4.fc41 fedora 220.2 KiB libcap-ng x86_64 0.8.5-3.fc41 fedora 69.2 KiB libcom_err x86_64 1.47.1-6.fc41 copr_base 67.0 KiB libcurl x86_64 8.9.1-3.fc41 updates 809.3 KiB libeconf x86_64 0.6.2-3.fc41 fedora 58.0 KiB libevent x86_64 2.1.12-14.fc41 fedora 895.7 KiB libfdisk x86_64 2.40.4-1.fc41 updates 356.4 KiB libffi x86_64 3.4.6-3.fc41 copr_base 82.2 KiB libgcc x86_64 14.2.1-7.fc41 updates 270.9 KiB libgomp x86_64 14.2.1-7.fc41 updates 514.2 KiB libidn2 x86_64 2.3.7-2.fc41 fedora 329.1 KiB libmount x86_64 2.40.4-1.fc41 updates 348.8 KiB libnghttp2 x86_64 1.62.1-2.fc41 fedora 166.1 KiB libnsl2 x86_64 2.0.1-2.fc41 fedora 57.9 KiB libpkgconf x86_64 2.3.0-1.fc41 fedora 78.2 KiB libpsl x86_64 0.21.5-4.fc41 copr_base 80.2 KiB libpwquality x86_64 1.4.5-11.fc41 fedora 417.8 KiB libselinux x86_64 3.7-5.fc41 copr_base 192.8 KiB libsemanage x86_64 3.7-2.fc41 fedora 293.5 KiB libsepol x86_64 3.7-2.fc41 fedora 817.8 KiB libsmartcols x86_64 2.40.4-1.fc41 updates 176.2 KiB libssh x86_64 0.10.6-8.fc41 fedora 513.3 KiB libssh-config noarch 0.10.6-8.fc41 fedora 277.0 B libstdc++ x86_64 14.2.1-7.fc41 updates 2.7 MiB libtasn1 x86_64 4.19.0-9.fc41 copr_base 195.6 KiB libtirpc x86_64 1.3.6-1.rc3.fc41 updates 197.6 KiB libtool-ltdl x86_64 2.4.7-12.fc41 fedora 66.2 KiB libunistring x86_64 1.1-8.fc41 fedora 1.7 MiB libutempter x86_64 1.2.1-15.fc41 fedora 57.7 KiB libuuid x86_64 2.40.4-1.fc41 updates 39.9 KiB libverto x86_64 0.3.2-9.fc41 fedora 29.5 KiB libxcrypt x86_64 4.4.38-3.fc41 updates 269.9 KiB libxml2 x86_64 2.12.9-1.fc41 updates 1.7 MiB libzstd x86_64 1.5.6-2.fc41 fedora 795.9 KiB lua-libs x86_64 5.4.6-6.fc41 fedora 285.0 KiB lua-srpm-macros noarch 1-14.fc41 fedora 1.3 KiB lz4-libs x86_64 1.10.0-1.fc41 fedora 145.5 KiB mpfr x86_64 4.2.1-5.fc41 fedora 832.1 KiB ncurses-base noarch 6.5-2.20240629.fc41 fedora 326.3 KiB ncurses-libs x86_64 6.5-2.20240629.fc41 fedora 975.2 KiB ocaml-srpm-macros noarch 10-3.fc41 fedora 1.9 KiB openblas-srpm-macros noarch 2-18.fc41 fedora 112.0 B openldap x86_64 2.6.8-7.fc41 updates 631.4 KiB openssl-libs x86_64 1:3.2.4-1.fc41 updates 7.8 MiB p11-kit x86_64 0.25.5-3.fc41 fedora 2.2 MiB p11-kit-trust x86_64 0.25.5-3.fc41 fedora 391.4 KiB package-notes-srpm-macros noarch 0.5-12.fc41 fedora 1.6 KiB pam x86_64 1.6.1-7.fc41 copr_base 1.8 MiB pam-libs x86_64 1.6.1-7.fc41 copr_base 142.7 KiB pcre2 x86_64 10.44-1.fc41.1 copr_base 728.3 KiB pcre2-syntax noarch 10.44-1.fc41.1 copr_base 251.6 KiB perl-srpm-macros noarch 1-56.fc41 fedora 861.0 B pkgconf x86_64 2.3.0-1.fc41 fedora 88.6 KiB pkgconf-m4 noarch 2.3.0-1.fc41 fedora 14.4 KiB pkgconf-pkg-config x86_64 2.3.0-1.fc41 fedora 989.0 B popt x86_64 1.19-7.fc41 fedora 136.9 KiB publicsuffix-list-dafsa noarch 20250116-1.fc41 updates 68.5 KiB pyproject-srpm-macros noarch 1.17.0-1.fc41 updates 1.9 KiB python-srpm-macros noarch 3.13-3.fc41 fedora 51.0 KiB qt5-srpm-macros noarch 5.15.15-1.fc41 fedora 500.0 B qt6-srpm-macros noarch 6.8.2-1.fc41 updates 456.0 B readline x86_64 8.2-10.fc41 fedora 493.2 KiB rpm x86_64 4.20.0-1.fc41 fedora 3.1 MiB rpm-build-libs x86_64 4.20.0-1.fc41 fedora 206.7 KiB rpm-libs x86_64 4.20.0-1.fc41 fedora 725.9 KiB rpm-sequoia x86_64 1.7.0-5.fc41 updates 2.4 MiB rust-srpm-macros noarch 26.3-3.fc41 fedora 4.8 KiB setup noarch 2.15.0-8.fc41 updates 720.7 KiB sqlite-libs x86_64 3.46.1-2.fc41 updates 1.5 MiB systemd-libs x86_64 256.11-1.fc41 updates 2.0 MiB util-linux-core x86_64 2.40.4-1.fc41 updates 1.5 MiB xxhash-libs x86_64 0.8.3-1.fc41 copr_base 105.9 KiB xz-libs x86_64 1:5.6.2-2.fc41 fedora 214.4 KiB zig-srpm-macros noarch 1-3.fc41 fedora 1.1 KiB zip x86_64 3.0-41.fc41 fedora 703.2 KiB zlib-ng-compat x86_64 2.2.3-1.fc41 copr_base 157.4 KiB zstd x86_64 1.5.6-2.fc41 fedora 1.7 MiB Installing groups: Buildsystem building group Transaction Summary: Installing: 154 packages Total size of inbound packages is 52 MiB. Need to download 0 B. After this operation, 180 MiB extra will be used (install 180 MiB, remove 0 B). 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Package Arch Version Repository Size Installing: fedora-clang-default-cc noarch 1-1.fc41 copr_tstellar_fedora_clang_default_cc 17.0 B Installing dependencies: annobin-docs noarch 12.69-1.fc41 fedora 97.7 KiB annobin-plugin-gcc x86_64 12.69-1.fc41 fedora 985.0 KiB clang x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 181.0 KiB clang-libs x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 114.5 MiB clang-resource-filesystem x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 15.3 KiB compiler-rt x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 40.9 MiB cpp x86_64 14.2.1-7.fc41 updates 34.5 MiB expat x86_64 2.6.4-1.fc41 updates 292.9 KiB gcc x86_64 14.2.1-7.fc41 updates 103.4 MiB gcc-c++ x86_64 14.2.1-7.fc41 updates 37.7 MiB gcc-plugin-annobin x86_64 14.2.1-7.fc41 updates 59.6 KiB glibc-devel x86_64 2.40-21.fc41 updates 2.3 MiB kernel-headers x86_64 6.12.4-200.fc41 updates 6.4 MiB libb2 x86_64 0.98.1-12.fc41 fedora 42.2 KiB libedit x86_64 3.1-54.20250104cvs.fc41 copr_base 260.7 KiB libmpc x86_64 1.3.1-6.fc41 fedora 164.7 KiB libomp x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 2.2 MiB libstdc++-devel x86_64 14.2.1-7.fc41 updates 15.4 MiB libxcrypt-devel x86_64 4.4.38-3.fc41 updates 30.8 KiB lld x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 48.8 KiB lld-libs x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 6.4 MiB llvm x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 90.0 MiB llvm-libs x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 137.3 MiB llvm-resource-filesystem x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 0.0 B make x86_64 1:4.4.1-8.fc41 fedora 1.8 MiB mpdecimal x86_64 2.5.1-16.fc41 fedora 204.9 KiB python-pip-wheel noarch 24.2-1.fc41 fedora 1.2 MiB python3 x86_64 3.13.2-1.fc41 updates 31.8 KiB python3-libs x86_64 3.13.2-1.fc41 updates 40.4 MiB tzdata noarch 2025a-1.fc41 updates 1.6 MiB Transaction Summary: Installing: 31 packages Total size of inbound packages is 169 MiB. Need to download 0 B. After this operation, 638 MiB extra will be used (install 638 MiB, remove 0 B). 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Installing gcc-c++-0:14.2.1-7.f 100% | 313.8 MiB/s | 37.7 MiB | 00m00s [16/33] Installing python-pip-wheel-0:2 100% | 413.9 MiB/s | 1.2 MiB | 00m00s [17/33] Installing mpdecimal-0:2.5.1-16 100% | 100.6 MiB/s | 206.0 KiB | 00m00s [18/33] Installing libb2-0:0.98.1-12.fc 100% | 7.0 MiB/s | 43.3 KiB | 00m00s [19/33] Installing python3-libs-0:3.13. 100% | 216.9 MiB/s | 40.8 MiB | 00m00s [20/33] Installing python3-0:3.13.2-1.f 100% | 32.7 MiB/s | 33.5 KiB | 00m00s [21/33] Installing compiler-rt-0:21.0.0 100% | 492.7 MiB/s | 40.9 MiB | 00m00s [22/33] Installing libedit-0:3.1-54.202 100% | 128.1 MiB/s | 262.3 KiB | 00m00s [23/33] Installing llvm-resource-filesy 100% | 0.0 B/s | 1.1 KiB | 00m00s [24/33] Installing llvm-libs-0:21.0.0~p 100% | 366.3 MiB/s | 137.4 MiB | 00m00s [25/33] Installing clang-libs-0:21.0.0~ 100% | 374.2 MiB/s | 114.5 MiB | 00m00s [26/33] Installing clang-0:21.0.0~pre20 100% | 60.2 MiB/s | 184.8 KiB | 00m00s [27/33] Installing llvm-0:21.0.0~pre202 100% | 333.4 MiB/s | 90.0 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Finish: installing minimal buildroot with dnf5 Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: add-determinism-0.3.6-3.fc41.x86_64 alternatives-1.31-1.fc41.x86_64 annobin-docs-12.69-1.fc41.noarch annobin-plugin-gcc-12.69-1.fc41.x86_64 ansible-srpm-macros-1-16.fc41.noarch audit-libs-4.0.3-1.fc41.x86_64 authselect-1.5.0-8.fc41.x86_64 authselect-libs-1.5.0-8.fc41.x86_64 basesystem-11-21.fc41.noarch bash-5.2.32-1.fc41.x86_64 binutils-2.43.1-5.fc41.x86_64 build-reproducibility-srpm-macros-0.3.6-3.fc41.noarch bzip2-1.0.8-19.fc41.x86_64 bzip2-libs-1.0.8-19.fc41.x86_64 ca-certificates-2024.2.69_v8.0.401-1.0.fc41.noarch clang-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 clang-libs-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 clang-resource-filesystem-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 compiler-rt-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 coreutils-9.5-11.fc41.x86_64 coreutils-common-9.5-11.fc41.x86_64 cpio-2.15-2.fc41.x86_64 cpp-14.2.1-7.fc41.x86_64 cracklib-2.9.11-6.fc41.x86_64 crypto-policies-20250124-1.git4d262e7.fc41.noarch curl-8.9.1-3.fc41.x86_64 cyrus-sasl-lib-2.1.28-27.fc41.x86_64 debugedit-5.1-4.fc41.x86_64 diffutils-3.10-8.fc41.x86_64 dwz-0.15-8.fc41.x86_64 ed-1.20.2-2.fc41.x86_64 efi-srpm-macros-5-13.fc41.noarch elfutils-0.192-7.fc41.x86_64 elfutils-debuginfod-client-0.192-7.fc41.x86_64 elfutils-default-yama-scope-0.192-7.fc41.noarch elfutils-libelf-0.192-7.fc41.x86_64 elfutils-libs-0.192-7.fc41.x86_64 expat-2.6.4-1.fc41.x86_64 fedora-clang-default-cc-1-1.fc41.noarch fedora-gpg-keys-41-1.noarch fedora-release-41-29.noarch fedora-release-common-41-29.noarch fedora-release-identity-basic-41-29.noarch fedora-repos-41-1.noarch file-5.45-7.fc41.x86_64 file-libs-5.45-7.fc41.x86_64 filesystem-3.18-23.fc41.x86_64 findutils-4.10.0-4.fc41.x86_64 fonts-srpm-macros-2.0.5-17.fc41.noarch forge-srpm-macros-0.4.0-1.fc41.noarch fpc-srpm-macros-1.3-13.fc41.noarch gawk-5.3.0-4.fc41.x86_64 gcc-14.2.1-7.fc41.x86_64 gcc-c++-14.2.1-7.fc41.x86_64 gcc-plugin-annobin-14.2.1-7.fc41.x86_64 gdb-minimal-15.2-4.fc41.x86_64 gdbm-1.23-7.fc41.x86_64 gdbm-libs-1.23-7.fc41.x86_64 ghc-srpm-macros-1.9.1-2.fc41.noarch glibc-2.40-21.fc41.x86_64 glibc-common-2.40-21.fc41.x86_64 glibc-devel-2.40-21.fc41.x86_64 glibc-gconv-extra-2.40-21.fc41.x86_64 glibc-minimal-langpack-2.40-21.fc41.x86_64 gmp-6.3.0-2.fc41.x86_64 gnat-srpm-macros-6-6.fc41.noarch go-srpm-macros-3.6.0-5.fc41.noarch gpg-pubkey-e99d6ad1-64d2612c grep-3.11-9.fc41.x86_64 gzip-1.13-2.fc41.x86_64 info-7.1-3.fc41.x86_64 jansson-2.13.1-10.fc41.x86_64 json-c-0.17-4.fc41.x86_64 kernel-headers-6.12.4-200.fc41.x86_64 kernel-srpm-macros-1.0-24.fc41.noarch keyutils-libs-1.6.3-4.fc41.x86_64 krb5-libs-1.21.3-4.fc41.x86_64 libacl-2.3.2-2.fc41.x86_64 libarchive-3.7.4-4.fc41.x86_64 libattr-2.5.2-4.fc41.x86_64 libb2-0.98.1-12.fc41.x86_64 libblkid-2.40.4-1.fc41.x86_64 libbrotli-1.1.0-5.fc41.x86_64 libcap-2.70-4.fc41.x86_64 libcap-ng-0.8.5-3.fc41.x86_64 libcom_err-1.47.1-6.fc41.x86_64 libcurl-8.9.1-3.fc41.x86_64 libeconf-0.6.2-3.fc41.x86_64 libedit-3.1-54.20250104cvs.fc41.x86_64 libevent-2.1.12-14.fc41.x86_64 libfdisk-2.40.4-1.fc41.x86_64 libffi-3.4.6-3.fc41.x86_64 libgcc-14.2.1-7.fc41.x86_64 libgomp-14.2.1-7.fc41.x86_64 libidn2-2.3.7-2.fc41.x86_64 libmount-2.40.4-1.fc41.x86_64 libmpc-1.3.1-6.fc41.x86_64 libnghttp2-1.62.1-2.fc41.x86_64 libnsl2-2.0.1-2.fc41.x86_64 libomp-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 libpkgconf-2.3.0-1.fc41.x86_64 libpsl-0.21.5-4.fc41.x86_64 libpwquality-1.4.5-11.fc41.x86_64 libselinux-3.7-5.fc41.x86_64 libsemanage-3.7-2.fc41.x86_64 libsepol-3.7-2.fc41.x86_64 libsmartcols-2.40.4-1.fc41.x86_64 libssh-0.10.6-8.fc41.x86_64 libssh-config-0.10.6-8.fc41.noarch libstdc++-14.2.1-7.fc41.x86_64 libstdc++-devel-14.2.1-7.fc41.x86_64 libtasn1-4.19.0-9.fc41.x86_64 libtirpc-1.3.6-1.rc3.fc41.x86_64 libtool-ltdl-2.4.7-12.fc41.x86_64 libunistring-1.1-8.fc41.x86_64 libutempter-1.2.1-15.fc41.x86_64 libuuid-2.40.4-1.fc41.x86_64 libverto-0.3.2-9.fc41.x86_64 libxcrypt-4.4.38-3.fc41.x86_64 libxcrypt-devel-4.4.38-3.fc41.x86_64 libxml2-2.12.9-1.fc41.x86_64 libzstd-1.5.6-2.fc41.x86_64 lld-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 lld-libs-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 llvm-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 llvm-libs-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 llvm-resource-filesystem-21.0.0~pre20250213.gc5a4512d853d7d-7.fc41.x86_64 lua-libs-5.4.6-6.fc41.x86_64 lua-srpm-macros-1-14.fc41.noarch lz4-libs-1.10.0-1.fc41.x86_64 make-4.4.1-8.fc41.x86_64 mpdecimal-2.5.1-16.fc41.x86_64 mpfr-4.2.1-5.fc41.x86_64 ncurses-base-6.5-2.20240629.fc41.noarch ncurses-libs-6.5-2.20240629.fc41.x86_64 ocaml-srpm-macros-10-3.fc41.noarch openblas-srpm-macros-2-18.fc41.noarch openldap-2.6.8-7.fc41.x86_64 openssl-libs-3.2.4-1.fc41.x86_64 p11-kit-0.25.5-3.fc41.x86_64 p11-kit-trust-0.25.5-3.fc41.x86_64 package-notes-srpm-macros-0.5-12.fc41.noarch pam-1.6.1-7.fc41.x86_64 pam-libs-1.6.1-7.fc41.x86_64 patch-2.7.6-25.fc41.x86_64 pcre2-10.44-1.fc41.1.x86_64 pcre2-syntax-10.44-1.fc41.1.noarch perl-srpm-macros-1-56.fc41.noarch pkgconf-2.3.0-1.fc41.x86_64 pkgconf-m4-2.3.0-1.fc41.noarch pkgconf-pkg-config-2.3.0-1.fc41.x86_64 popt-1.19-7.fc41.x86_64 publicsuffix-list-dafsa-20250116-1.fc41.noarch pyproject-srpm-macros-1.17.0-1.fc41.noarch python-pip-wheel-24.2-1.fc41.noarch python-srpm-macros-3.13-3.fc41.noarch python3-3.13.2-1.fc41.x86_64 python3-libs-3.13.2-1.fc41.x86_64 qt5-srpm-macros-5.15.15-1.fc41.noarch qt6-srpm-macros-6.8.2-1.fc41.noarch readline-8.2-10.fc41.x86_64 redhat-rpm-config-293-1.fc41.noarch rpm-4.20.0-1.fc41.x86_64 rpm-build-4.20.0-1.fc41.x86_64 rpm-build-libs-4.20.0-1.fc41.x86_64 rpm-libs-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 rust-srpm-macros-26.3-3.fc41.noarch sed-4.9-3.fc41.x86_64 setup-2.15.0-8.fc41.noarch shadow-utils-4.15.1-12.fc41.x86_64 sqlite-libs-3.46.1-2.fc41.x86_64 systemd-libs-256.11-1.fc41.x86_64 tar-1.35-4.fc41.x86_64 tzdata-2025a-1.fc41.noarch unzip-6.0-64.fc41.x86_64 util-linux-2.40.4-1.fc41.x86_64 util-linux-core-2.40.4-1.fc41.x86_64 which-2.21-42.fc41.x86_64 xxhash-libs-0.8.3-1.fc41.x86_64 xz-5.6.2-2.fc41.x86_64 xz-libs-5.6.2-2.fc41.x86_64 zig-srpm-macros-1-3.fc41.noarch zip-3.0-41.fc41.x86_64 zlib-ng-compat-2.2.3-1.fc41.x86_64 zstd-1.5.6-2.fc41.x86_64 Start: buildsrpm Start: rpmbuild -bs Building target platforms: x86_64 Building for target x86_64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1721260800 Wrote: /builddir/build/SRPMS/openbabel-3.1.1-29.fc41.src.rpm Finish: rpmbuild -bs INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1739594052.998728/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-jfbyijq9/openbabel/openbabel.spec) Config(child) 0 minutes 29 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot INFO: Start(/var/lib/copr-rpmbuild/results/openbabel-3.1.1-29.fc41.src.rpm) Config(fedora-41-x86_64) Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1739594052.998728/root. INFO: reusing tmpfs at /var/lib/mock/fedora-41-x86_64-bootstrap-1739594052.998728/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-41-x86_64-1739594052.998728/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin INFO: Buildroot is handled by package management downloaded with a bootstrap image: rpm-4.20.0-1.fc41.x86_64 rpm-sequoia-1.7.0-5.fc41.x86_64 dnf5-5.2.8.1-3.fc41.x86_64 dnf5-plugins-5.2.8.1-3.fc41.x86_64 Finish: chroot init Start: build phase for openbabel-3.1.1-29.fc41.src.rpm Start: build setup for openbabel-3.1.1-29.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 sh: line 1: perl: command not found setting SOURCE_DATE_EPOCH=1721260800 Wrote: /builddir/build/SRPMS/openbabel-3.1.1-29.fc41.src.rpm Updating and loading repositories: updates 100% | 856.9 KiB/s | 31.7 KiB | 00m00s fedora 100% | 1.2 MiB/s | 32.1 KiB | 00m00s Copr repository 100% | 43.7 KiB/s | 1.5 KiB | 00m00s Additional repo copr_tstellar_fedora_c 100% | 52.1 KiB/s | 1.5 KiB | 00m00s Additional repo copr_fedora_llvm_team_ 100% | 46.2 KiB/s | 1.5 KiB | 00m00s Copr repository 100% | 3.8 MiB/s | 382.3 KiB | 00m00s Repositories loaded. Package "gcc-c++-14.2.1-7.fc41.x86_64" is already installed. Package "make-1:4.4.1-8.fc41.x86_64" is already installed. Package Arch Version Repository Size Downgrading: clang x86_64 19.1.7-2.fc41 updates 184.8 KiB replacing clang x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 181.0 KiB clang-libs x86_64 19.1.7-2.fc41 updates 125.0 MiB replacing clang-libs x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 114.5 MiB clang-resource-filesystem x86_64 19.1.7-2.fc41 updates 15.3 KiB replacing clang-resource-filesystem x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 15.3 KiB compiler-rt x86_64 19.1.7-2.fc41 updates 36.5 MiB replacing compiler-rt x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 40.9 MiB libomp x86_64 19.1.7-2.fc41 updates 1.9 MiB replacing libomp x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 2.2 MiB lld x86_64 19.1.7-2.fc41 updates 48.2 KiB replacing lld x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 48.8 KiB lld-libs x86_64 19.1.7-2.fc41 updates 6.1 MiB replacing lld-libs x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 6.4 MiB llvm x86_64 19.1.7-2.fc41 updates 75.3 MiB replacing llvm x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 90.0 MiB llvm-libs x86_64 19.1.7-2.fc41 updates 124.5 MiB replacing llvm-libs x86_64 21.0.0~pre20250213.gc5a4512d853d7d-7.fc41 copr_fedora_llvm_team_llvm_snapshots_big_merge_20250213 137.3 MiB Installing: ImageMagick x86_64 1:7.1.1.43-1.fc41 updates 88.4 KiB boost-devel x86_64 1.83.0-8.fc41 fedora 143.0 MiB cmake x86_64 3.30.7-1.fc41 updates 32.7 MiB desktop-file-utils x86_64 0.27-2.fc41 fedora 230.4 KiB dos2unix x86_64 7.5.2-2.fc41 fedora 831.8 KiB eigen3-devel noarch 3.4.0-16.fc41 fedora 8.4 MiB inchi-devel x86_64 1.0.6-10.fc41 fedora 97.0 KiB libxml2-devel x86_64 2.12.9-1.fc41 updates 3.4 MiB perl-devel x86_64 4:5.40.1-514.fc41 updates 8.0 MiB perl-generators noarch 1.16-6.fc41 fedora 21.8 KiB python3-devel x86_64 3.13.2-1.fc41 updates 1.8 MiB python3-setuptools noarch 69.2.0-8.fc41 fedora 7.2 MiB rapidjson-devel x86_64 1.1.0-42.fc41 fedora 607.2 KiB ruby-devel x86_64 3.3.7-18.fc41 updates 1.6 MiB swig x86_64 4.2.1-9.fc41 updates 6.0 MiB wxGTK-devel x86_64 3.2.6-1.fc41 updates 74.0 KiB Installing dependencies: ImageMagick-libs x86_64 1:7.1.1.43-1.fc41 updates 9.1 MiB LibRaw x86_64 0.21.3-1.fc41 fedora 2.3 MiB SDL2 x86_64 2.30.11-1.fc41 updates 1.8 MiB abattis-cantarell-vf-fonts noarch 0.301-13.fc41 fedora 192.7 KiB adobe-mappings-cmap noarch 20231115-1.fc41 updates 15.2 MiB adobe-mappings-cmap-deprecated noarch 20231115-1.fc41 updates 582.1 KiB adobe-mappings-pdf noarch 20190401-8.fc41 fedora 4.4 MiB adwaita-cursor-theme noarch 47.0-1.fc41 fedora 10.0 MiB 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82.8 KiB boost-filesystem x86_64 1.83.0-8.fc41 fedora 147.6 KiB boost-graph x86_64 1.83.0-8.fc41 fedora 346.4 KiB boost-iostreams x86_64 1.83.0-8.fc41 fedora 94.8 KiB boost-json x86_64 1.83.0-8.fc41 fedora 329.2 KiB boost-locale x86_64 1.83.0-8.fc41 fedora 606.2 KiB boost-log x86_64 1.83.0-8.fc41 fedora 1.5 MiB boost-math x86_64 1.83.0-8.fc41 fedora 647.1 KiB boost-nowide x86_64 1.83.0-8.fc41 fedora 24.9 KiB boost-numpy3 x86_64 1.83.0-8.fc41 fedora 57.6 KiB boost-program-options x86_64 1.83.0-8.fc41 fedora 272.7 KiB boost-python3 x86_64 1.83.0-8.fc41 fedora 250.5 KiB boost-random x86_64 1.83.0-8.fc41 fedora 29.7 KiB boost-regex x86_64 1.83.0-8.fc41 fedora 271.0 KiB boost-serialization x86_64 1.83.0-8.fc41 fedora 437.7 KiB boost-stacktrace x86_64 1.83.0-8.fc41 fedora 64.1 KiB boost-system x86_64 1.83.0-8.fc41 fedora 16.3 KiB boost-test x86_64 1.83.0-8.fc41 fedora 643.0 KiB boost-thread x86_64 1.83.0-8.fc41 fedora 136.8 KiB boost-timer x86_64 1.83.0-8.fc41 fedora 25.1 KiB 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perl-Socket x86_64 4:2.038-511.fc41 fedora 124.0 KiB perl-Storable x86_64 1:3.32-511.fc41 fedora 232.4 KiB perl-Symbol noarch 1.09-514.fc41 updates 6.8 KiB perl-Term-ANSIColor noarch 5.01-512.fc41 fedora 97.5 KiB perl-Term-Cap noarch 1.18-511.fc41 fedora 29.3 KiB perl-Test-Harness noarch 1:3.50-1.fc41 fedora 559.6 KiB perl-Text-ParseWords noarch 3.31-511.fc41 fedora 13.6 KiB perl-Text-Tabs+Wrap noarch 2024.001-511.fc41 fedora 22.6 KiB perl-Time-Local noarch 2:1.350-511.fc41 fedora 69.0 KiB perl-URI noarch 5.30-1.fc41 fedora 256.9 KiB perl-base noarch 2.27-514.fc41 updates 12.5 KiB perl-constant noarch 1.33-512.fc41 fedora 26.2 KiB perl-if noarch 0.61.000-514.fc41 updates 5.8 KiB perl-interpreter x86_64 4:5.40.1-514.fc41 updates 122.3 KiB perl-lib x86_64 0.65-514.fc41 updates 8.5 KiB perl-libnet noarch 3.15-512.fc41 fedora 289.4 KiB perl-libs x86_64 4:5.40.1-514.fc41 updates 9.8 MiB perl-locale noarch 1.12-514.fc41 updates 6.5 KiB perl-macros noarch 4:5.40.1-514.fc41 updates 5.5 KiB perl-mro x86_64 1.29-514.fc41 updates 45.6 KiB perl-overload noarch 1.37-514.fc41 updates 71.5 KiB perl-overloading noarch 0.02-514.fc41 updates 4.8 KiB perl-parent noarch 1:0.242-1.fc41 fedora 10.0 KiB perl-podlators noarch 1:6.0.2-2.fc41 fedora 317.5 KiB perl-vars noarch 1.05-514.fc41 updates 3.9 KiB perl-version x86_64 9:0.99.33-1.fc41 fedora 132.8 KiB pixman x86_64 0.44.2-1.fc41 copr_base 802.7 KiB pixman-devel x86_64 0.44.2-1.fc41 copr_base 49.4 KiB pyproject-rpm-macros noarch 1.17.0-1.fc41 updates 114.0 KiB python-rpm-macros noarch 3.13-3.fc41 fedora 22.1 KiB python3-numpy x86_64 1:1.26.4-8.fc41 fedora 43.8 MiB python3-packaging noarch 24.2-3.fc41 updates 558.3 KiB python3-pyparsing noarch 3.1.2-7.fc41 fedora 1.0 MiB python3-rpm-generators noarch 14-11.fc41 fedora 81.7 KiB python3-rpm-macros noarch 3.13-3.fc41 fedora 6.4 KiB rav1e-libs x86_64 0.7.1-4.fc41 fedora 3.0 MiB rhash x86_64 1.4.4-2.fc41 fedora 349.9 KiB rsvg-pixbuf-loader x86_64 2.59.2-1.fc41 updates 330.6 KiB ruby x86_64 3.3.7-18.fc41 updates 89.4 KiB ruby-default-gems noarch 3.3.7-18.fc41 updates 76.3 KiB ruby-libs x86_64 3.3.7-18.fc41 updates 14.6 MiB rubygem-io-console x86_64 0.7.1-18.fc41 updates 37.2 KiB rubygem-psych x86_64 5.1.2-18.fc41 updates 135.8 KiB rubygems noarch 3.5.22-18.fc41 updates 1.4 MiB rubypick noarch 1.1.1-21.fc41 fedora 4.4 KiB shared-mime-info x86_64 2.3-6.fc41 fedora 5.2 MiB spirv-tools-libs x86_64 2024.4-1.fc41 updates 5.4 MiB svt-av1-libs x86_64 2.3.0-1.fc41 copr_base 6.4 MiB sysprof-capture-devel x86_64 47.2-1.fc41 updates 252.8 KiB systemtap-sdt-devel x86_64 5.2-1.fc41 updates 182.4 KiB systemtap-sdt-dtrace x86_64 5.2-1.fc41 updates 179.0 KiB urw-base35-bookman-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-c059-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-d050000l-fonts noarch 20200910-23.fc41 fedora 84.3 KiB urw-base35-fonts noarch 20200910-23.fc41 fedora 5.3 KiB urw-base35-fonts-common noarch 20200910-23.fc41 fedora 37.4 KiB urw-base35-gothic-fonts noarch 20200910-23.fc41 fedora 1.2 MiB urw-base35-nimbus-mono-ps-fonts noarch 20200910-23.fc41 fedora 1.0 MiB urw-base35-nimbus-roman-fonts noarch 20200910-23.fc41 fedora 1.4 MiB urw-base35-nimbus-sans-fonts noarch 20200910-23.fc41 fedora 2.4 MiB urw-base35-p052-fonts noarch 20200910-23.fc41 fedora 1.5 MiB urw-base35-standard-symbols-ps-fonts noarch 20200910-23.fc41 fedora 64.9 KiB urw-base35-z003-fonts noarch 20200910-23.fc41 fedora 390.8 KiB vim-filesystem noarch 2:9.1.1081-1.fc41 updates 40.0 B vulkan-loader x86_64 1.4.304.0-1.fc41 updates 519.3 KiB wayland-devel x86_64 1.23.0-2.fc41 fedora 679.0 KiB webkit2gtk4.1 x86_64 2.46.6-1.fc41 updates 75.6 MiB woff2 x86_64 1.0.2-20.fc41 fedora 133.7 KiB wxBase x86_64 3.2.6-1.fc41 updates 2.9 MiB wxBase-devel x86_64 3.2.6-1.fc41 updates 6.7 MiB wxGTK x86_64 3.2.6-1.fc41 updates 16.3 MiB wxGTK-gl x86_64 3.2.6-1.fc41 updates 106.7 KiB wxGTK-i18n noarch 3.2.6-1.fc41 updates 2.8 MiB wxGTK-media x86_64 3.2.6-1.fc41 updates 86.5 KiB wxGTK-webview x86_64 3.2.6-1.fc41 updates 204.2 KiB xdg-dbus-proxy x86_64 0.1.6-1.fc41 fedora 94.7 KiB xkeyboard-config noarch 2.42-2.fc41 fedora 6.5 MiB xml-common noarch 0.6.3-65.fc41 fedora 78.4 KiB xorg-x11-proto-devel noarch 2024.1-3.fc41 fedora 1.7 MiB xprop x86_64 1.2.7-2.fc41 copr_base 58.8 KiB xz-devel x86_64 1:5.6.2-2.fc41 fedora 255.6 KiB zlib-ng-compat-devel x86_64 2.2.3-1.fc41 copr_base 107.0 KiB Transaction Summary: Installing: 420 packages Replacing: 9 packages Downgrading: 9 packages Total size of inbound packages is 327 MiB. Need to download 270 MiB. After this operation, 1 GiB extra will be used (install 1 GiB, remove 392 MiB). 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| 00m00s [415/429] adobe-mappings-cmap-deprecate 100% | 615.2 KiB/s | 110.7 KiB | 00m00s [416/429] libzstd-devel-0:1.5.6-2.fc41. 100% | 664.3 KiB/s | 51.8 KiB | 00m00s [417/429] libwebp-devel-0:1.5.0-1.fc41. 100% | 400.6 KiB/s | 39.7 KiB | 00m00s [418/429] libdatrie-devel-0:0.2.13-10.f 100% | 1.9 MiB/s | 155.3 KiB | 00m00s [419/429] libXtst-devel-0:1.2.5-1.fc41. 100% | 205.7 KiB/s | 15.8 KiB | 00m00s [420/429] adobe-mappings-cmap-0:2023111 100% | 1.9 MiB/s | 2.2 MiB | 00m01s [421/429] llvm-0:19.1.7-2.fc41.x86_64 100% | 3.1 MiB/s | 21.3 MiB | 00m07s [422/429] clang-resource-filesystem-0:1 100% | 201.4 KiB/s | 18.9 KiB | 00m00s [423/429] clang-0:19.1.7-2.fc41.x86_64 100% | 872.2 KiB/s | 84.6 KiB | 00m00s [424/429] llvm-libs-0:19.1.7-2.fc41.x86 100% | 4.3 MiB/s | 31.5 MiB | 00m07s [425/429] libomp-0:19.1.7-2.fc41.x86_64 100% | 2.8 MiB/s | 672.4 KiB | 00m00s [426/429] compiler-rt-0:19.1.7-2.fc41.x 100% | 4.9 MiB/s | 2.6 MiB | 00m01s [427/429] lld-0:19.1.7-2.fc41.x86_64 100% | 449.3 KiB/s | 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python3-setuptools 100% | 143.7 MiB/s | 7.3 MiB | 00m00s [431/440] Installing dos2unix-0:7.5.2-2 100% | 103.2 MiB/s | 845.6 KiB | 00m00s [432/440] Removing lld-0:21.0.0~pre2025 100% | 1.9 KiB/s | 23.0 B | 00m00s [433/440] Removing clang-0:21.0.0~pre20 100% | 12.7 KiB/s | 26.0 B | 00m00s [434/440] Removing clang-libs-0:21.0.0~ 100% | 8.8 KiB/s | 289.0 B | 00m00s [435/440] Removing lld-libs-0:21.0.0~pr 100% | 8.5 KiB/s | 26.0 B | 00m00s [436/440] Removing libomp-0:21.0.0~pre2 100% | 7.5 KiB/s | 23.0 B | 00m00s [437/440] Removing llvm-0:21.0.0~pre202 100% | 18.2 KiB/s | 521.0 B | 00m00s [438/440] Removing compiler-rt-0:21.0.0 100% | 9.7 KiB/s | 129.0 B | 00m00s [439/440] Removing clang-resource-files 100% | 8.8 KiB/s | 9.0 B | 00m00s [440/440] Removing llvm-libs-0:21.0.0~p 100% | 29.0 B/s | 26.0 B | 00m01s Warning: skipped OpenPGP checks for 22 packages from repository: copr_base Complete! Finish: build setup for openbabel-3.1.1-29.fc41.src.rpm Start: rpmbuild openbabel-3.1.1-29.fc41.src.rpm Building target platforms: x86_64 Building for target x86_64 setting SOURCE_DATE_EPOCH=1721260800 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.I5y1Tb + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + test -d /builddir/build/BUILD/openbabel-3.1.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/openbabel-3.1.1-build + /usr/bin/rm -rf /builddir/build/BUILD/openbabel-3.1.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.KOAcN6 + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + cd /builddir/build/BUILD/openbabel-3.1.1-build + rm -rf openbabel-openbabel-3-1-1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/openbabel-openbabel-3-1-1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd openbabel-openbabel-3-1-1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (openbabel-perl.patch): + echo 'Patch #0 (openbabel-perl.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .perl_path --fuzz=0 patching file scripts/CMakeLists.txt Hunk #1 succeeded at 367 (offset 31 lines). Patch #1 (openbabel-plugindir.patch): + echo 'Patch #1 (openbabel-plugindir.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .plugindir --fuzz=0 patching file CMakeLists.txt patching file OpenBabel3Config.cmake.in + echo 'Patch #2 (openbabel-noswig-rubymethod.patch):' Patch #2 (openbabel-noswig-rubymethod.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .noswig_ruby --fuzz=0 patching file scripts/CMakeLists.txt Hunk #1 succeeded at 416 (offset 42 lines). + echo 'Patch #3 (openbabel-ruby19-vendorarch.patch):' Patch #3 (openbabel-ruby19-vendorarch.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .ruby_vendor --fuzz=0 patching file scripts/CMakeLists.txt Hunk #1 succeeded at 447 (offset 47 lines). + echo 'Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch):' Patch #5 (openbabel-fix-libdir-in-pkgconfig.patch): + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .s390x --fuzz=0 patching file openbabel-3.pc.cmake Patch #7 (openbabel-3.1.1-fix_bug2223.patch): + echo 'Patch #7 (openbabel-3.1.1-fix_bug2223.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file src/forcefields/forcefielduff.cpp Patch #8 (openbabel-3.1.1-fix_bug2217.patch): + echo 'Patch #8 (openbabel-3.1.1-fix_bug2217.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file test/testdistgeom.py Patch #9 (openbabel-3.1.1-bug2378.patch): + echo 'Patch #9 (openbabel-3.1.1-bug2378.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file scripts/CMakeLists.txt Hunk #1 succeeded at 102 (offset -4 lines). Patch #10 (openbabel-3.1.1-bug2493.patch): + echo 'Patch #10 (openbabel-3.1.1-bug2493.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p1 -b --suffix .backup --fuzz=0 patching file src/config.h.cmake + rm -rf src/formats/libinchi + dos2unix -k data/chemdrawcdx.h include/openbabel/tautomer.h include/openbabel/math/align.h src/math/align.cpp test/testsmartssym.py dos2unix: converting file data/chemdrawcdx.h to Unix format... dos2unix: converting file include/openbabel/tautomer.h to Unix format... dos2unix: converting file include/openbabel/math/align.h to Unix format... dos2unix: converting file src/math/align.cpp to Unix format... dos2unix: converting file test/testsmartssym.py to Unix format... + convert src/GUI/babel.xpm -transparent white babel.png WARNING: The convert command is deprecated in IMv7, use "magick" instead of "convert" or "magick convert" + pushd doc ~/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc ~/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 + for man in *.1 ++ basename obabel.1 .1 + html=obabel.html + '[' -f obabel.html ']' + rm obabel.html + for man in *.1 ++ basename obchiral.1 .1 + html=obchiral.html + '[' -f obchiral.html ']' + rm obchiral.html + for man in *.1 ++ basename obconformer.1 .1 + html=obconformer.html + '[' -f obconformer.html ']' + rm obconformer.html + for man in *.1 ++ basename obdistgen.1 .1 + html=obdistgen.html + '[' -f obdistgen.html ']' + for man in *.1 ++ basename obenergy.1 .1 + html=obenergy.html + '[' -f obenergy.html ']' + rm obenergy.html + for man in *.1 ++ basename obfit.1 .1 + html=obfit.html + '[' -f obfit.html ']' + rm obfit.html + for man in *.1 ++ basename obgen.1 .1 + html=obgen.html + '[' -f obgen.html ']' + rm obgen.html + for man in *.1 ++ basename obgrep.1 .1 + html=obgrep.html + '[' -f obgrep.html ']' + rm obgrep.html + for man in *.1 ++ basename obgui.1 .1 + html=obgui.html + '[' -f obgui.html ']' + rm obgui.html + for man in *.1 ++ basename obminimize.1 .1 + html=obminimize.html + '[' -f obminimize.html ']' + rm obminimize.html + for man in *.1 ++ basename obprobe.1 .1 + html=obprobe.html + '[' -f obprobe.html ']' + rm obprobe.html + for man in *.1 ++ basename obprop.1 .1 + html=obprop.html + '[' -f obprop.html ']' + rm obprop.html + for man in *.1 ++ basename obrms.1 .1 + html=obrms.html + '[' -f obrms.html ']' + for man in *.1 ++ basename obrotamer.1 .1 + html=obrotamer.html + '[' -f obrotamer.html ']' + rm obrotamer.html + for man in *.1 ++ basename obrotate.1 .1 + html=obrotate.html + '[' -f obrotate.html ']' + rm obrotate.html + for man in *.1 ++ basename obspectrophore.1 .1 + html=obspectrophore.html + '[' -f obspectrophore.html ']' + rm obspectrophore.html + for man in *.1 ++ basename obsym.1 .1 + html=obsym.html + '[' -f obsym.html ']' + for man in *.1 ++ basename obtautomer.1 .1 + html=obtautomer.html + '[' -f obtautomer.html ']' + for man in *.1 ++ basename obthermo.1 .1 + html=obthermo.html + '[' -f obthermo.html ']' + for man in *.1 ++ basename roundtrip.1 .1 + html=roundtrip.html + '[' -f roundtrip.html ']' ~/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 + popd + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.psKJmr + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=clang + export CC + CXX=clang++ + export CXX + cd openbabel-openbabel-3-1-1 + mkdir -p x86_64-redhat-linux-gnu + CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=clang + export CC + CXX=clang++ + export CXX + /usr/bin/cmake -S . -B redhat-linux-build -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_DO_STRIP:BOOL=OFF -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_INSTALL_FULL_SBINDIR:PATH=/usr/sbin -DCMAKE_INSTALL_SBINDIR:PATH=sbin -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -B x86_64-redhat-linux-gnu -Wno-dev -DCMAKE_SKIP_RPATH:BOOL=ON -DBUILD_GUI:BOOL=ON -DPYTHON_BINDINGS:BOOL=ON -DPYTHON_EXECUTABLE=/usr/bin/python3 -DPERL_BINDINGS:BOOL=ON -DRUBY_BINDINGS:BOOL=ON -DWITH_MAEPARSER:BOOL=OFF -DWITH_COORDGEN:BOOL=OFF -DOB_PLUGIN_INSTALL_DIR:PATH=lib64/openbabel3 -DOPENBABEL_USE_SYSTEM_INCHI=true -DINCHI_INCLUDE_DIR:PATH=/usr/include/inchi -DINCHI_LIBRARY:FILEPATH=/usr/lib64/libinchi.so -DENABLE_VERSIONED_FORMATS=false -DRUN_SWIG=true -DENABLE_TESTS:BOOL=ON -DOPTIMIZE_NATIVE=OFF -DGLIBC_24_COMPATIBLE:BOOL=OFF -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/clang - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/clang++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.12.9") -- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1") -- Found wxWidgets: -pthread;;;-lwx_baseu-3.2;-lwx_gtk3u_core-3.2 (found version "3.2.6") -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - not found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Checking available shared pointer... -- Performing Test HAVE_STD_SHARED_PTR -- Performing Test HAVE_STD_SHARED_PTR - Success -- Performing Test HAVE_STD_TR1_SHARED_PTR -- Performing Test HAVE_STD_TR1_SHARED_PTR - Failed -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER -- Performing Test HAVE_STD_TR1_SHARED_PTR_IN_TR1_HEADER - Success -- Use std::shared_ptr in memory -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: program_options iostreams -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: filesystem iostreams unit_test_framework -- Maestro formats will NOT be supported. Please install Boost to enable Maestro formats. -- Coordinate generation with Coordgen will NOT be supported. Please install Boost to enable Maestro formats. -- Found PkgConfig: /usr/bin/pkg-config (found version "2.3.0") -- Found RapidJSON: /usr/include (found suitable version "1.1.0", minimum required is "1.1.0") -- JSON formats will be supported. Using RapidJSON 1.1.0 at /usr/include -- Checking for module 'cairo' -- Found cairo, version 1.18.2 -- Found Cairo: /usr/lib64/libcairo.so -- Cairo found. PNG output will be supported. -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.45.0") found components: system -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Found Boost: /usr/lib64/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: program_options iostreams -- Looking for getopt -- Looking for getopt - found -- Attempting to build the GUI -- wxWidgets found => GUI will be built -- Found PythonInterp: /usr/bin/python3 (found version "3.13.2") -- Found SWIG: /usr/bin/swig (found version "4.2.1") -- Found SWIG: /usr/bin/swig (found suitable version "4.2.1", minimum required is "2.0") -- Found PythonLibs: /usr/lib64/libpython3.13.so (found version "3.13.2") -- Python bindings will be compiled -- Found Perl: /usr/bin/perl (found version "5.40.1") -- Found PerlLibs: /usr/lib64/libperl.so (found version "5.40.1") -- Perl bindings will be compiled -- Found Ruby: /usr/bin/ruby (found suitable version "3.3.7", minimum required is "1.8.0") -- Ruby bindings will be compiled -- Configuring done (7.4s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_RELEASE CMAKE_Fortran_FLAGS_RELEASE CMAKE_INSTALL_DO_STRIP INCLUDE_INSTALL_DIR SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu + /usr/bin/make -O -j2 V=1 VERBOSE=1 -C x86_64-redhat-linux-gnu make: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/cmake -S/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 -B/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/CMakeFiles /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu//CMakeFiles/progress.marks make: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/openbabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/alias.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/alias.cpp.o -MF CMakeFiles/openbabel.dir/alias.cpp.o.d -o CMakeFiles/openbabel.dir/alias.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/alias.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/alias.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/atom.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/atom.cpp.o -MF CMakeFiles/openbabel.dir/atom.cpp.o.d -o CMakeFiles/openbabel.dir/atom.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/atom.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/atom.cpp:1786:24: warning: unused variable 'i' [-Wunused-variable] 1786 | OBBondIterator i; | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 0%] Building CXX object src/CMakeFiles/openbabel.dir/base.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT 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-D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/builder.cpp.o -MF CMakeFiles/openbabel.dir/builder.cpp.o.d -o CMakeFiles/openbabel.dir/builder.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/builder.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/builder.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/builder.cpp:1082:31: warning: unused variable 'l' [-Wunused-variable] 1082 | vector::iterator l; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/canon.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG 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-I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/chargemodel.cpp.o -MF CMakeFiles/openbabel.dir/chargemodel.cpp.o.d -o CMakeFiles/openbabel.dir/chargemodel.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/chargemodel.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/chargemodel.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 1%] Building CXX object src/CMakeFiles/openbabel.dir/chains.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include 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not used [-Wunused-private-field] 189 | unsigned int _ncols,_nrows; | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/data_utilities.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin 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src/CMakeFiles/openbabel.dir/descriptor.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/descriptor.cpp.o -MF CMakeFiles/openbabel.dir/descriptor.cpp.o.d -o CMakeFiles/openbabel.dir/descriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptor.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/fingerprint.cpp.o cd 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-fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/fingerprint.cpp.o -MF CMakeFiles/openbabel.dir/fingerprint.cpp.o.d -o CMakeFiles/openbabel.dir/fingerprint.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprint.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprint.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/fingerprint.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 2%] Building CXX object src/CMakeFiles/openbabel.dir/elements.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG 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-I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/format.cpp.o -MF CMakeFiles/openbabel.dir/format.cpp.o.d -o CMakeFiles/openbabel.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/format.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/format.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/forcefield.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/forcefield.cpp.o -MF CMakeFiles/openbabel.dir/forcefield.cpp.o.d -o CMakeFiles/openbabel.dir/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:34: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/grid.h:123:10: warning: 'OpenBabel::OBFloatGrid::Init' hides overloaded virtual function [-Woverloaded-virtual] 123 | void Init(OBMol &box,double spacing, double pad=0.0); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/grid.h:55:18: note: hidden overloaded virtual function 'OpenBabel::OBGrid::Init' declared here: different number of parameters (1 vs 3) 55 | virtual void Init(OBMol &box); | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:35: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:1353:33: warning: array subscript is of type 'char' [-Wchar-subscripts] 1353 | num_permutations = factorial[num_rotors_to_permute]; | ^~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:1291:9: warning: unused variable 'origLogLevel' [-Wunused-variable] 1291 | int origLogLevel = _loglvl; | ^~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefield.cpp:1327:12: warning: variable 'energy_offset' set but not used [-Wunused-but-set-variable] 1327 | double energy_offset; | ^ 7 warnings generated. make[2]: Entering 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^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 3%] Building CXX object src/CMakeFiles/openbabel.dir/graphsym.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall 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'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/griddata.cpp:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/griddata.cpp:27: 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-ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obconversion.cpp.o -MF CMakeFiles/openbabel.dir/obconversion.cpp.o.d -o CMakeFiles/openbabel.dir/obconversion.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obconversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obconversion.cpp:48: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obconversion.cpp:53: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstream.h:333: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstreamimpl.h:242:44: warning: variable 'total_written_byte_size' set but not used [-Wunused-but-set-variable] 242 | std::streamsize written_byte_size = 0, total_written_byte_size = 0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstreamimpl.h:179:9: warning: reference cannot be bound to dereferenced null pointer in well-defined C++ code; pointer may be assumed to always convert to true [-Wundefined-bool-conversion] 179 | if(&_ostream) | ~~ ^~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstreamimpl.h:86:5: note: in instantiation of member function 'zlib_stream::basic_zip_streambuf::flush' requested here 86 | flush(); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/zipstreamimpl.h:620:35: note: in instantiation of member function 'zlib_stream::basic_zip_streambuf::~basic_zip_streambuf' requested here 620 | basic_zip_ostream::basic_zip_ostream(ostream_reference ostream, | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obconversion.cpp:398:46: note: in instantiation of member function 'zlib_stream::basic_zip_ostream::basic_zip_ostream' requested here 398 | zlib_stream::zip_ostream *zOut = new zlib_stream::zip_ostream(*pOutput, true); | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 5%] Building CXX object src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/mcdlutil.cpp.o -MF CMakeFiles/openbabel.dir/mcdlutil.cpp.o.d -o CMakeFiles/openbabel.dir/mcdlutil.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:2965:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 2965 | bool test; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:3002:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 3002 | bool test; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4216:19: warning: variable 'nBondsOld' set but not used [-Wunused-but-set-variable] 4216 | int nAtomsOld,nBondsOld,naDef1,naDef,i; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4217:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4217:15: warning: variable 'test1' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4217:21: warning: variable 'test2' set but not used [-Wunused-but-set-variable] 4217 | bool test,test1,test2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4219:40: warning: variable 'xCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4219:48: warning: variable 'yCenter' set but not used [-Wunused-but-set-variable] 4219 | double r,scale,xOld,yOld,xNew,yNew,xCenter,yCenter; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4399:10: warning: variable 'test' set but not used [-Wunused-but-set-variable] 4399 | bool test; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:5036:95: warning: add explicit braces to avoid dangling else [-Wdangling-else] 5036 | if (test2) for (j=0; jnBonds(); j++) if (bSTested[j]>=0) (*bondLabel)[j]=1; else (*bondLabel)[j]=0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:4840:9: warning: variable 'cycleNumber' set but not used [-Wunused-but-set-variable] 4840 | int cycleNumber; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:5660:9: warning: variable 'naStore' set but not used [-Wunused-but-set-variable] 5660 | int naStore; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:5924:9: warning: variable 'qq' set but not used [-Wunused-but-set-variable] 5924 | int qq=0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:6684:26: warning: variable 'n4' set but not used [-Wunused-but-set-variable] 6684 | int i,j,n,m,n1,n2,n3,n4,an1,an2,an3,an4,k; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:164:13: warning: unused variable 'lightMetals' [-Wunused-const-variable] 164 | const int lightMetals[NLIGHT_METALS] = { | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/mcdlutil.cpp:166:13: warning: unused variable 'heavyMetals' [-Wunused-const-variable] 166 | const int heavyMetals[NHEAVY_METALS] = { | ^~~~~~~~~~~ 17 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/oberror.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data 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'/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/op.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 6%] Building CXX object src/CMakeFiles/openbabel.dir/obiter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data 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/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/plugin.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/plugin.cpp:20: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/query.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/query.cpp.o -MF CMakeFiles/openbabel.dir/query.cpp.o.d -o CMakeFiles/openbabel.dir/query.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/query.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from 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_GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 7%] Building CXX object src/CMakeFiles/openbabel.dir/pointgroup.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rand.cpp.o -MF CMakeFiles/openbabel.dir/rand.cpp.o.d -o CMakeFiles/openbabel.dir/rand.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rand.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rand.cpp:428:15: warning: unused function 'GenerateSequence' [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rand.cpp:31: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rand.h:70:18: warning: private field 'i' is not used [-Wunused-private-field] 70 | unsigned int i; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/reactionfacade.cpp.o -MF CMakeFiles/openbabel.dir/reactionfacade.cpp.o.d -o CMakeFiles/openbabel.dir/reactionfacade.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/reactionfacade.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/reactionfacade.cpp:122:15: warning: unused variable 'atm' [-Wunused-variable] 122 | OBAtom* atm = &*atom; | ^~~ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/residue.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/residue.cpp.o -MF CMakeFiles/openbabel.dir/residue.cpp.o.d -o CMakeFiles/openbabel.dir/residue.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/residue.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/rotamer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotamer.cpp.o -MF CMakeFiles/openbabel.dir/rotamer.cpp.o.d -o CMakeFiles/openbabel.dir/rotamer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:412:10: warning: misleading indentation; statement is not part of the previous 'while' [-Wmisleading-indentation] 412 | while (angle > 360.0) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:410:11: note: previous statement is here 410 | while (angle < 0.0) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:545:10: warning: misleading indentation; statement is not part of the previous 'while' [-Wmisleading-indentation] 545 | while (angle > 360.0) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:543:11: note: previous statement is here 543 | while (angle < 0.0) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotamer.cpp:93:14: warning: unused variable 'SwabInt' [-Wunused-const-variable] 93 | const bool SwabInt = (STPTR[0]!=0); | ^~~~~~~ 3 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 8%] Building CXX object src/CMakeFiles/openbabel.dir/ring.cpp.o cd 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-I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/rotor.cpp.o -MF CMakeFiles/openbabel.dir/rotor.cpp.o.d -o CMakeFiles/openbabel.dir/rotor.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/rotor.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/tautomer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tautomer.cpp.o -MF CMakeFiles/openbabel.dir/tautomer.cpp.o.d -o CMakeFiles/openbabel.dir/tautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/tautomer.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/tautomer.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/tautomer.cpp:406:13: warning: variable 'numSingleBond' set but not used [-Wunused-but-set-variable] 406 | int numSingleBond = 0, numDoubleBond = 0, numUnassigned = 0; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 9%] Building CXX object src/CMakeFiles/openbabel.dir/tokenst.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/tokenst.cpp.o -MF CMakeFiles/openbabel.dir/tokenst.cpp.o.d -o CMakeFiles/openbabel.dir/tokenst.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/tokenst.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering 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-Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/transform.cpp.o -MF CMakeFiles/openbabel.dir/transform.cpp.o.d -o CMakeFiles/openbabel.dir/transform.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/transform.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/transform.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 10%] 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-m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/typer.cpp.o -MF CMakeFiles/openbabel.dir/typer.cpp.o.d -o CMakeFiles/openbabel.dir/typer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/typer.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/obmolecformat.cpp.o -MF CMakeFiles/openbabel.dir/obmolecformat.cpp.o.d -o CMakeFiles/openbabel.dir/obmolecformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obmolecformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obmolecformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obmolecformat.cpp:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/obmolecformat.cpp:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/conformersearch.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/conformersearch.cpp.o -MF CMakeFiles/openbabel.dir/conformersearch.cpp.o.d -o CMakeFiles/openbabel.dir/conformersearch.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:250:12: warning: unused variable 'score' [-Wunused-variable] 250 | double score = ff->Energy(false); // no gradients | ^~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:352:23: warning: unused variable 'end_it' [-Wunused-variable] 352 | OBRotorIterator end_it = m_rotorList.EndRotors(); | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:924:35: warning: unused variable 'dit' [-Wunused-variable] 924 | std::vector::iterator dit; | ^~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:977:10: warning: unused variable 'flag_niched' [-Wunused-variable] 977 | bool flag_niched = false; | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:1106:23: warning: unused variable 'lowest' [-Wunused-variable] 1106 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:1106:37: warning: unused variable 'highest' [-Wunused-variable] 1106 | double sum = 0.0, lowest = 0.0, highest = 0.0; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:1107:32: warning: unused variable 'nit' [-Wunused-variable] 1107 | std::vector::iterator nit; | ^~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/conformersearch.cpp:1108:35: warning: unused variable 'dit' [-Wunused-variable] 1108 | std::vector::iterator dit; | ^~~ 9 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 10%] Building CXX object src/CMakeFiles/openbabel.dir/confsearch.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/confsearch.cpp.o -MF CMakeFiles/openbabel.dir/confsearch.cpp.o.d -o CMakeFiles/openbabel.dir/confsearch.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp:134:59: warning: 'bind2nd, double>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 134 | vec.erase(std::remove_if(vec.begin(), vec.end(), std::bind2nd(std::less(), (cutoff + 0.1) )), vec.end()); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:170:5: note: 'bind2nd, double>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp:189:14: warning: unused variable 'min_rmsd' [-Wunused-variable] 189 | double min_rmsd = DBL_MAX; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/confsearch.cpp:444:70: warning: 'bind2nd, double>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 444 | transform(_energies.begin(), _energies.end(), _energies.begin(), bind2nd(std::plus(), energy_offset)); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:170:5: note: 'bind2nd, double>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -MF CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o.d -o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/dlhandler_unix.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/depict/depict.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/depict.cpp.o -MF CMakeFiles/openbabel.dir/depict/depict.cpp.o.d -o CMakeFiles/openbabel.dir/depict/depict.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:284:11: warning: unused variable 'nclasses' [-Wunused-variable] 284 | int nclasses = end_pos - copy_sym.begin(); | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1024:21: warning: unused variable 'metrics' [-Wunused-variable] 1024 | OBFontMetrics metrics = painter->GetFontMetrics(str); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1029:21: warning: unused variable 'metrics' [-Wunused-variable] 1029 | OBFontMetrics metrics = painter->GetFontMetrics(subscript); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1238:99: warning: expression does not compute the number of elements in this array; element type is 'const float', not 'double' [-Wsizeof-array-div] 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ~~~~~~~~~~~ ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1237:24: note: array 'dashpattern' declared here 1237 | static const float dashpattern[] = {5., 5.}; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/depict.cpp:1238:99: note: place parentheses around the 'sizeof(double)' expression to silence this warning 1238 | static const vector pat = vector(dashpattern,dashpattern + sizeof(dashpattern)/sizeof(double)); | ^ 4 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -MF CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o.d -o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/svgpainter.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/svgpainter.cpp:38:8: warning: initializer order does not match the declaration order [-Wreorder-ctor] 37 | m_Pencolor("black"), m_Fillcolor("white"), m_Gradientcolor(make_pair(OBColor("white"),OBColor("white"))), m_PenWidth(1), | ~~~~~~~~~~~~~ | m_Gradients(gradients) 38 | m_fontPointSize(16), m_isFillcolor(true), m_Gradients(gradients) {} | ^~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~ | m_isFillcolor(true) m_PenWidth(1) m_fontPointSize(16) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/svgpainter.cpp:38:8: note: field 'm_fontPointSize' will be initialized after field 'm_isFillcolor' 38 | m_fontPointSize(16), m_isFillcolor(true), m_Gradients(gradients) {} | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/svgpainter.cpp:38:29: note: field 'm_isFillcolor' will be initialized after field 'm_Gradients' 38 | m_fontPointSize(16), m_isFillcolor(true), m_Gradients(gradients) {} | ^~~~~~~~~~~~~~~~~~~ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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-I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/vector3.cpp.o -MF CMakeFiles/openbabel.dir/math/vector3.cpp.o.d -o CMakeFiles/openbabel.dir/math/vector3.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/math/vector3.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 11%] Building CXX object src/CMakeFiles/openbabel.dir/distgeom.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/distgeom.cpp.o -MF CMakeFiles/openbabel.dir/distgeom.cpp.o.d -o CMakeFiles/openbabel.dir/distgeom.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:38: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:54:9: warning: unknown pragma ignored [-Wunknown-pragmas] 54 | #pragma warning(disable : 4244) // warning C4244: '=' : conversion from 'double' to 'float', possible loss of data | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:55:9: warning: unknown pragma ignored [-Wunknown-pragmas] 55 | #pragma warning(disable : 4305) // warning C4305: '*=' : truncation from 'double' to 'float' | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:435:14: warning: variable 'angle' set but not used [-Wunused-but-set-variable] 435 | double angle = 180.0 - (360.0 / size); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1089:16: warning: unused variable 'lb' [-Wunused-variable] 1089 | double lb = _d->GetLowerBounds(i, j); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1090:16: warning: unused variable 'ub' [-Wunused-variable] 1090 | double ub = _d->GetUpperBounds(i, j); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1136:16: warning: unused variable 'lb' [-Wunused-variable] 1136 | double lb = _d->GetLowerBounds(i, j); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1137:16: warning: unused variable 'ub' [-Wunused-variable] 1137 | double ub = _d->GetUpperBounds(i, j); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1115:9: warning: unused variable 'niter' [-Wunused-variable] 1115 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/distgeom.cpp:1160:9: warning: unused variable 'niter' [-Wunused-variable] 1160 | int niter = solver.minimize(fun, _coord, fx); | ^~~~~ 10 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/stereo.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security 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'/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 12%] Building CXX object src/CMakeFiles/openbabel.dir/math/align.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/math/align.cpp.o -MF CMakeFiles/openbabel.dir/math/align.cpp.o.d -o CMakeFiles/openbabel.dir/math/align.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/math/align.cpp /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/math/align.cpp:327:53: warning: unused variable 'cit' [-Wunused-variable] 327 | OBIsomorphismMapper::Mappings::const_iterator cit; | ^~~ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 13%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin 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-I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -MF CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/gen3dstereohelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/gen3dstereohelper.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 14%] Building CXX object src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/openbabel.dir/stereo/perception.cpp.o -MF CMakeFiles/openbabel.dir/stereo/perception.cpp.o.d -o CMakeFiles/openbabel.dir/stereo/perception.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2951:7: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 2951 | return true; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2795:5: note: previous statement is here 2795 | for (std::vector::iterator data = vdata.begin(); data != vdata.end(); ++data) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2973:80: warning: 'bind1st, unsigned long>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:134:5: note: 'bind1st, unsigned long>' has been explicitly marked deprecated here 134 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2973:16: warning: 'binder1st>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 2973 | const std::binder1st > equal_to_atomId = std::bind1st (equal_to(), atomId); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:130:7: note: 'binder1st>' has been explicitly marked deprecated here 130 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::bind"); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:3005:85: warning: 'bind1st, unsigned long>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:134:5: note: 'bind1st, unsigned long>' has been explicitly marked deprecated here 134 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:3005:16: warning: 'binder1st>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 3005 | const std::binder1st > equal_to_implicitRef = std::bind1st (equal_to(), (OBStereo::Ref) OBStereo::ImplicitRef); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:130:7: note: 'binder1st>' has been explicitly marked deprecated here 130 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::bind"); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 5 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 14%] Linking CXX shared library ../lib64/libopenbabel.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/openbabel.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -Wl,-soname,libopenbabel.so.7 -o ../lib64/libopenbabel.so.7.0.0 CMakeFiles/openbabel.dir/alias.cpp.o CMakeFiles/openbabel.dir/atom.cpp.o CMakeFiles/openbabel.dir/base.cpp.o CMakeFiles/openbabel.dir/bitvec.cpp.o CMakeFiles/openbabel.dir/bond.cpp.o CMakeFiles/openbabel.dir/bondtyper.cpp.o CMakeFiles/openbabel.dir/builder.cpp.o CMakeFiles/openbabel.dir/canon.cpp.o CMakeFiles/openbabel.dir/chains.cpp.o CMakeFiles/openbabel.dir/chargemodel.cpp.o CMakeFiles/openbabel.dir/data.cpp.o CMakeFiles/openbabel.dir/data_utilities.cpp.o CMakeFiles/openbabel.dir/descriptor.cpp.o CMakeFiles/openbabel.dir/elements.cpp.o CMakeFiles/openbabel.dir/fingerprint.cpp.o CMakeFiles/openbabel.dir/forcefield.cpp.o CMakeFiles/openbabel.dir/format.cpp.o CMakeFiles/openbabel.dir/generic.cpp.o CMakeFiles/openbabel.dir/graphsym.cpp.o CMakeFiles/openbabel.dir/grid.cpp.o CMakeFiles/openbabel.dir/griddata.cpp.o CMakeFiles/openbabel.dir/isomorphism.cpp.o CMakeFiles/openbabel.dir/kekulize.cpp.o CMakeFiles/openbabel.dir/locale.cpp.o CMakeFiles/openbabel.dir/matrix.cpp.o CMakeFiles/openbabel.dir/mcdlutil.cpp.o CMakeFiles/openbabel.dir/molchrg.cpp.o CMakeFiles/openbabel.dir/mol.cpp.o CMakeFiles/openbabel.dir/obconversion.cpp.o CMakeFiles/openbabel.dir/oberror.cpp.o CMakeFiles/openbabel.dir/obfunctions.cpp.o CMakeFiles/openbabel.dir/obiter.cpp.o CMakeFiles/openbabel.dir/obutil.cpp.o CMakeFiles/openbabel.dir/op.cpp.o CMakeFiles/openbabel.dir/parsmart.cpp.o CMakeFiles/openbabel.dir/patty.cpp.o CMakeFiles/openbabel.dir/phmodel.cpp.o CMakeFiles/openbabel.dir/plugin.cpp.o CMakeFiles/openbabel.dir/pointgroup.cpp.o CMakeFiles/openbabel.dir/query.cpp.o CMakeFiles/openbabel.dir/rand.cpp.o CMakeFiles/openbabel.dir/reactionfacade.cpp.o CMakeFiles/openbabel.dir/residue.cpp.o CMakeFiles/openbabel.dir/ring.cpp.o CMakeFiles/openbabel.dir/rotamer.cpp.o CMakeFiles/openbabel.dir/rotor.cpp.o CMakeFiles/openbabel.dir/spectrophore.cpp.o CMakeFiles/openbabel.dir/tautomer.cpp.o CMakeFiles/openbabel.dir/tokenst.cpp.o CMakeFiles/openbabel.dir/transform.cpp.o CMakeFiles/openbabel.dir/typer.cpp.o CMakeFiles/openbabel.dir/obmolecformat.cpp.o CMakeFiles/openbabel.dir/conformersearch.cpp.o CMakeFiles/openbabel.dir/confsearch.cpp.o CMakeFiles/openbabel.dir/distgeom.cpp.o CMakeFiles/openbabel.dir/dlhandler_unix.cpp.o CMakeFiles/openbabel.dir/depict/depict.cpp.o CMakeFiles/openbabel.dir/depict/svgpainter.cpp.o CMakeFiles/openbabel.dir/math/matrix3x3.cpp.o CMakeFiles/openbabel.dir/math/spacegroup.cpp.o CMakeFiles/openbabel.dir/math/transform3d.cpp.o CMakeFiles/openbabel.dir/math/vector3.cpp.o CMakeFiles/openbabel.dir/math/align.cpp.o CMakeFiles/openbabel.dir/stereo/stereo.cpp.o CMakeFiles/openbabel.dir/stereo/tetranonplanar.cpp.o CMakeFiles/openbabel.dir/stereo/tetraplanar.cpp.o CMakeFiles/openbabel.dir/stereo/squareplanar.cpp.o CMakeFiles/openbabel.dir/stereo/cistrans.cpp.o CMakeFiles/openbabel.dir/stereo/tetrahedral.cpp.o CMakeFiles/openbabel.dir/stereo/perception.cpp.o CMakeFiles/openbabel.dir/stereo/facade.cpp.o CMakeFiles/openbabel.dir/stereo/gen3dstereohelper.cpp.o -lm -ldl -lz cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library ../lib64/libopenbabel.so.7.0.0 ../lib64/libopenbabel.so.7 ../lib64/libopenbabel.so make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 14%] Built target openbabel make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 15%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/cansmidescriptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/cansmidescriptor.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 15%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger2.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger2.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/fingerprint.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 15%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/cmpdfilter.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/cmpdfilter.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 15%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger3.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger3.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/fingerprint.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/finger3.cpp:258:34: warning: unsequenced modification and access to 'div' [-Wunsequenced] 258 | ngrp = (num + div -1)/div--; //rounds up | ~~~ ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/groupcontrib.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/groupcontrib.cpp:33: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/groupcontrib.h:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/filters.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/filters.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_fingerprints_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -MF CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o.d -o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/fingerecfp.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/fingerecfp.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/fingerprint.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/fingerprints/fingerecfp.cpp:64:8: warning: private field '_keepdups' is not used [-Wunused-private-field] 64 | bool _keepdups; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Linking CXX shared module ../lib64/plugin_fingerprints.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_fingerprints.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_fingerprints.so CMakeFiles/plugin_fingerprints.dir/fingerprints/finger2.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/finger3.cpp.o CMakeFiles/plugin_fingerprints.dir/fingerprints/fingerecfp.cpp.o -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Built target plugin_fingerprints make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/inchidescriptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/inchidescriptor.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:134:19: warning: 'binary_function &, const std::basic_string &, bool>' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function &, const std::basic_string &, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/inchidescriptor.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: warning: while loop has empty body [-Wempty-body] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: note: put the semicolon on a separate line to silence this warning /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: warning: while loop has empty body [-Wempty-body] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: note: put the semicolon on a separate line to silence this warning 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_descriptors_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -MF CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o.d -o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/smartsdescriptors.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/descriptors/smartsdescriptors.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Linking CXX shared module ../lib64/plugin_descriptors.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_descriptors.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_descriptors.so CMakeFiles/plugin_descriptors.dir/descriptors/cansmidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/cmpdfilter.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/groupcontrib.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/filters.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/inchidescriptor.cpp.o CMakeFiles/plugin_descriptors.dir/descriptors/smartsdescriptors.cpp.o -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Built target plugin_descriptors make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addfilename.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addfilename.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addinindex.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addinindex.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldgaff.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldgaff.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldgaff.h:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 17%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addpolarh.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addpolarh.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addnonpolarh.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/addnonpolarh.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/canonical.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/canonical.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 18%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldghemical.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldghemical.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldghemical.h:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 18%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/changecell.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/changecell.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/delpolarh.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/delpolarh.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/delnonpolarh.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/delnonpolarh.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/gen2D.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/gen2D.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/fillUC.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/fillUC.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 18%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp:2798:32: warning: variable 'bondtype1' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp:2798:43: warning: variable 'bondtype2' set but not used [-Wunused-but-set-variable] 2798 | int angletype, strbndtype, bondtype1, bondtype2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefieldmmff94.cpp:4660:29: warning: unused variable 'rj' [-Wunused-variable] 4660 | vector::iterator rj; | ^~ 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 19%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/forcefield.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/forcefield.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/forcefield.cpp:265:10: warning: unused variable 'done' [-Wunused-variable] 265 | bool done = true; | ^~~~ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/gen3d.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/gen3d.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/largest.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/largest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/largest.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 19%] Building CXX object src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_forcefields_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -MF CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o.d -o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefielduff.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefielduff.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefielduff.h:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/forcefields/forcefielduff.cpp:431:14: warning: unused variable 'ab' [-Wunused-variable] 431 | double ab[3]; | ^~ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/loader.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/loader.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/loader.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/loader.cpp:148:15: warning: private field '_filename' is not used [-Wunused-private-field] 148 | const char* _filename; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/loader.cpp:149:15: warning: private field '_descr' is not used [-Wunused-private-field] 149 | const char* _descr; | ^ 3 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/neutralize.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/neutralize.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 20%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opsplit.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opsplit.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opsplit.cpp:95:5: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 95 | if(pConv->IsFirstInput()) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opsplit.cpp:92:3: note: previous statement is here 92 | if(!pConv) | ^ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 20%] Linking CXX shared module ../lib64/plugin_forcefields.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_forcefields.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_forcefields.so CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldgaff.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldghemical.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefieldmmff94.cpp.o CMakeFiles/plugin_forcefields.dir/forcefields/forcefielduff.cpp.o -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/optransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/optransform.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/optransform.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 21%] Built target plugin_forcefields make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/partialcharges.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/partialcharges.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 21%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eem.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eem.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eem.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eem.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 21%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/readconformers.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/readconformers.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/gasteiger.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/gasteiger.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/none.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/none.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/none.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/none.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/none.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/sort.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:32:28: warning: 'binary_function, std::pair, bool>' is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:121:44: note: in instantiation of template class 'OpenBabel::Order' requested here 121 | std::sort(valvec.begin(),valvec.end(), Order(_pDesc, _rev)); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function, std::pair, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:32:28: warning: 'binary_function>, std::pair>, bool>' is deprecated [-Wdeprecated-declarations] 32 | struct Order : public std::binary_function, std::pair, bool> | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/sort.cpp:152:44: note: in instantiation of template class 'OpenBabel::Order>' requested here 152 | std::sort(valvec.begin(),valvec.end(), Order(_pDesc, _rev)); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function>, std::pair>, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/mmff94.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/mmff94.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 22%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opisomorph.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opisomorph.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opisomorph.h:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 22%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/fromfile.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/fromfile.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/ophighlight.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/ophighlight.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/xout.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/xout.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/xout.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/conformer.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/conformer.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opalign.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opalign.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 23%] Building CXX object src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_ops_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -MF CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o.d -o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opconfab.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/opconfab.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 24%] Linking CXX shared module ../lib64/plugin_ops.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_ops.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_ops.so CMakeFiles/plugin_ops.dir/ops/addfilename.cpp.o CMakeFiles/plugin_ops.dir/ops/addinindex.cpp.o CMakeFiles/plugin_ops.dir/ops/addpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/addnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/canonical.cpp.o CMakeFiles/plugin_ops.dir/ops/changecell.cpp.o CMakeFiles/plugin_ops.dir/ops/delpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/delnonpolarh.cpp.o CMakeFiles/plugin_ops.dir/ops/gen2D.cpp.o CMakeFiles/plugin_ops.dir/ops/fillUC.cpp.o CMakeFiles/plugin_ops.dir/ops/forcefield.cpp.o CMakeFiles/plugin_ops.dir/ops/gen3d.cpp.o CMakeFiles/plugin_ops.dir/ops/largest.cpp.o CMakeFiles/plugin_ops.dir/ops/loader.cpp.o CMakeFiles/plugin_ops.dir/ops/neutralize.cpp.o CMakeFiles/plugin_ops.dir/ops/opsplit.cpp.o CMakeFiles/plugin_ops.dir/ops/optransform.cpp.o CMakeFiles/plugin_ops.dir/ops/partialcharges.cpp.o CMakeFiles/plugin_ops.dir/ops/readconformers.cpp.o CMakeFiles/plugin_ops.dir/ops/sort.cpp.o CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o CMakeFiles/plugin_ops.dir/ops/ophighlight.cpp.o CMakeFiles/plugin_ops.dir/ops/xout.cpp.o CMakeFiles/plugin_ops.dir/ops/conformer.cpp.o CMakeFiles/plugin_ops.dir/ops/opalign.cpp.o CMakeFiles/plugin_ops.dir/ops/opconfab.cpp.o -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 24%] Built target plugin_ops make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 23%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eqeq.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eqeq.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/eqeq.h:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qeq.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qeq.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qeq.h:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Building CXX object src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dplugin_charges_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -MF CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o.d -o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qtpie.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qtpie.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/charges/qtpie.h:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/chargemodel.h:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Linking CXX shared module ../lib64/plugin_charges.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/plugin_charges.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/plugin_charges.so CMakeFiles/plugin_charges.dir/charges/eem.cpp.o CMakeFiles/plugin_charges.dir/charges/gasteiger.cpp.o CMakeFiles/plugin_charges.dir/charges/none.cpp.o CMakeFiles/plugin_charges.dir/charges/mmff94.cpp.o CMakeFiles/plugin_charges.dir/charges/fromfile.cpp.o CMakeFiles/plugin_charges.dir/charges/eqeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qeq.cpp.o CMakeFiles/plugin_charges.dir/charges/qtpie.cpp.o -lm -ldl -lz ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Built target plugin_charges make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Building CXX object src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsmilesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smilesformat.dir/smilesformat.cpp.o -MF CMakeFiles/smilesformat.dir/smilesformat.cpp.o.d -o CMakeFiles/smilesformat.dir/smilesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:318:54: warning: field '_preserve_aromaticity' will be initialized after field '_rxnrole' [-Wreorder-ctor] 318 | OBSmilesParser(bool preserve_aromaticity=false): _preserve_aromaticity(preserve_aromaticity), _rxnrole(1) { } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ | _rxnrole(1) _preserve_aromaticity(preserve_aromaticity) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:655:15: warning: variable 'atom' set but not used [-Wunused-but-set-variable] 655 | OBAtom* atom; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:2689:10: warning: unused variable 'normalValence' [-Wunused-variable] 2689 | bool normalValence = true; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:2690:10: warning: unused variable 'writeExplicitHydrogen' [-Wunused-variable] 2690 | bool writeExplicitHydrogen = false; | ^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:3139:22: warning: unused variable 'bond_order' [-Wunused-variable] 3139 | unsigned int bond_order = bond->GetBondOrder(); | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:3134:20: warning: unused variable 'nbr_bond_order' [-Wunused-variable] 3134 | unsigned int nbr_bond_order = nbr_bond->GetBondOrder(); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:3286:11: warning: unused variable 'bo' [-Wunused-variable] 3286 | int bo = (bond1->IsAromatic())? 1 : bond1->GetBondOrder(); // CJ: why was this line added? bo is never used? | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smilesformat.cpp:4313:27: warning: unused variable 'i' [-Wunused-variable] 4313 | vector::iterator i; | ^ 9 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Linking CXX shared module ../../lib64/smilesformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smilesformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/smilesformat.so CMakeFiles/smilesformat.dir/smilesformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Built target smilesformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Building CXX object src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmdlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdlformat.dir/mdlformat.cpp.o -MF CMakeFiles/mdlformat.dir/mdlformat.cpp.o.d -o CMakeFiles/mdlformat.dir/mdlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdlformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdlformat.cpp:35: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdlformat.cpp:774:20: warning: variable 'count' set but not used [-Wunused-but-set-variable] 774 | unsigned int count = 0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdlformat.cpp:1488:10: warning: unused variable 'chiralWatch' [-Wunused-variable] 1488 | bool chiralWatch=false; | ^~~~~~~~~~~ 3 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Building CXX object src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmol2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mol2format.dir/mol2format.cpp.o -MF CMakeFiles/mol2format.dir/mol2format.cpp.o.d -o CMakeFiles/mol2format.dir/mol2format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mol2format.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mol2format.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mol2format.cpp:785:10: warning: unused variable 'ch' [-Wunused-variable] 785 | char ch = ifs.peek(); | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mol2format.cpp:86:15: warning: unused function 'IsThiocarboxylSulfur' [-Wunused-function] 86 | static bool IsThiocarboxylSulfur(OBAtom* queryatom) | ^~~~~~~~~~~~~~~~~~~~ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Linking CXX shared module ../../lib64/mol2format.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mol2format.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mol2format.so CMakeFiles/mol2format.dir/mol2format.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Built target mol2format make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Linking CXX shared module ../../lib64/mdlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mdlformat.so CMakeFiles/mdlformat.dir/mdlformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 26%] Built target mdlformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 26%] Building CXX object src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbformat.dir/pdbformat.cpp.o -MF CMakeFiles/pdbformat.dir/pdbformat.cpp.o.d -o CMakeFiles/pdbformat.dir/pdbformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 26%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/inchiformat.cpp.o -MF CMakeFiles/inchiformat.dir/inchiformat.cpp.o.d -o CMakeFiles/inchiformat.dir/inchiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/inchiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/inchiformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/inchiformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:134:19: warning: 'binary_function &, const std::basic_string &, bool>' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function &, const std::basic_string &, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/inchiformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: warning: while loop has empty body [-Wempty-body] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: note: put the semicolon on a separate line to silence this warning /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: warning: while loop has empty body [-Wempty-body] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: note: put the semicolon on a separate line to silence this warning 4 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 27%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/getinchi.cpp.o -MF CMakeFiles/inchiformat.dir/getinchi.cpp.o.d -o CMakeFiles/inchiformat.dir/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/getinchi.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 26%] Linking CXX shared module ../../lib64/pdbformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pdbformat.so CMakeFiles/pdbformat.dir/pdbformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 27%] Built target pdbformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 28%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/asciiformat.cpp.o -MF CMakeFiles/asciiformat.dir/asciiformat.cpp.o.d -o CMakeFiles/asciiformat.dir/asciiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/asciiformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/asciiformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 27%] Building CXX object src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -MF CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o.d -o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/unique.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/unique.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/op.h:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:134:19: warning: 'binary_function &, const std::basic_string &, bool>' is deprecated [-Wdeprecated-declarations] 134 | : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function &, const std::basic_string &, bool>' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/ops/unique.cpp:23: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: warning: while loop has empty body [-Wempty-body] 149 | while(p1!=s1.end() && isdigit(*p1++)); --p1; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:149:50: note: put the semicolon on a separate line to silence this warning /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: warning: while loop has empty body [-Wempty-body] 154 | while(p2!=s2.end() && isdigit(*p2++)); --p2; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/inchiformat.h:154:50: note: put the semicolon on a separate line to silence this warning 4 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 28%] Linking CXX shared module ../../lib64/inchiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/inchiformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/inchiformat.so CMakeFiles/inchiformat.dir/inchiformat.cpp.o CMakeFiles/inchiformat.dir/getinchi.cpp.o CMakeFiles/inchiformat.dir/__/ops/unique.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 28%] Building CXX object src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dasciiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -MF CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o.d -o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/asciipainter.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 28%] Built target inchiformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 28%] Linking CXX shared module ../../lib64/asciiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/asciiformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/asciiformat.so CMakeFiles/asciiformat.dir/asciiformat.cpp.o CMakeFiles/asciiformat.dir/__/depict/asciipainter.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Built target asciiformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Building CXX object src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcopyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/copyformat.dir/copyformat.cpp.o -MF CMakeFiles/copyformat.dir/copyformat.cpp.o.d -o CMakeFiles/copyformat.dir/copyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/copyformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/copyformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Linking CXX shared module ../../lib64/copyformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/copyformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/copyformat.so CMakeFiles/copyformat.dir/copyformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Built target copyformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Building CXX object src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMNAformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MNAformat.dir/MNAformat.cpp.o -MF CMakeFiles/MNAformat.dir/MNAformat.cpp.o.d -o CMakeFiles/MNAformat.dir/MNAformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MNAformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MNAformat.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Building CXX object src/formats/CMakeFiles/molreport.dir/molreport.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmolreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molreport.dir/molreport.cpp.o -MF CMakeFiles/molreport.dir/molreport.cpp.o.d -o CMakeFiles/molreport.dir/molreport.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/molreport.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/molreport.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Linking CXX shared module ../../lib64/molreport.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molreport.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/molreport.so CMakeFiles/molreport.dir/molreport.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Built target molreport make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Linking CXX shared module ../../lib64/MNAformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MNAformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/MNAformat.so CMakeFiles/MNAformat.dir/MNAformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 30%] Built target MNAformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 30%] Building CXX object src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dnulformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nulformat.dir/nulformat.cpp.o -MF CMakeFiles/nulformat.dir/nulformat.cpp.o.d -o CMakeFiles/nulformat.dir/nulformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nulformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nulformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 31%] Linking CXX shared module ../../lib64/nulformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nulformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/nulformat.so CMakeFiles/nulformat.dir/nulformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 31%] Built target nulformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 31%] Building CXX object src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/painterformat.cpp.o -MF CMakeFiles/painterformat.dir/painterformat.cpp.o.d -o CMakeFiles/painterformat.dir/painterformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/painterformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/painterformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/painterformat.cpp:114:12: warning: unused variable 'ofs' [-Wunused-variable] 114 | ostream& ofs = *pConv->GetOutStream(); | ^~~ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Building CXX object src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpainterformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -MF CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o.d -o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/commandpainter.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Linking CXX shared module ../../lib64/painterformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/painterformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/painterformat.so CMakeFiles/painterformat.dir/painterformat.cpp.o CMakeFiles/painterformat.dir/__/depict/commandpainter.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Built target painterformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Building CXX object src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpovrayformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/povrayformat.dir/povrayformat.cpp.o -MF CMakeFiles/povrayformat.dir/povrayformat.cpp.o.d -o CMakeFiles/povrayformat.dir/povrayformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:173:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 173 | size_t time_res; /* Result of strftime */ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:526:71: warning: 'bind1st, char>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 526 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:134:5: note: 'bind1st, char>' has been explicitly marked deprecated here 134 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:587:71: warning: 'bind1st, char>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 587 | bond_type.erase(remove_if(bond_type.begin(), bond_type.end(), bind1st(equal_to(), '.')), bond_type.end()); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:134:5: note: 'bind1st, char>' has been explicitly marked deprecated here 134 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/povrayformat.cpp:807:17: warning: unused variable 'title' [-Wunused-variable] 807 | const char* title = pmol->GetTitle(); | ^~~~~ 5 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Linking CXX shared module ../../lib64/povrayformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/povrayformat.so CMakeFiles/povrayformat.dir/povrayformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Built target povrayformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Building CXX object src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dreportformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/reportformat.dir/reportformat.cpp.o -MF CMakeFiles/reportformat.dir/reportformat.cpp.o.d -o CMakeFiles/reportformat.dir/reportformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/reportformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/reportformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Linking CXX shared module ../../lib64/reportformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/reportformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/reportformat.so CMakeFiles/reportformat.dir/reportformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Built target reportformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Building CXX object src/formats/CMakeFiles/textformat.dir/textformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtextformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/textformat.dir/textformat.cpp.o -MF CMakeFiles/textformat.dir/textformat.cpp.o.d -o CMakeFiles/textformat.dir/textformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/textformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/textformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Building CXX object src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsvgformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/svgformat.dir/svgformat.cpp.o -MF CMakeFiles/svgformat.dir/svgformat.cpp.o.d -o CMakeFiles/svgformat.dir/svgformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp:248:18: warning: unused variable 'n' [-Wunused-variable] 248 | unsigned int n=0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp:273:8: warning: unused variable 'ret' [-Wunused-variable] 273 | bool ret = WriteSVG(pConv,_objects); | ^~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/svgformat.cpp:172:21: warning: private field '_textpos' is not used [-Wunused-private-field] 172 | string::size_type _textpos; | ^ 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 33%] Linking CXX shared module ../../lib64/textformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/textformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/textformat.so CMakeFiles/textformat.dir/textformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 33%] Built target textformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 33%] Linking CXX shared module ../../lib64/svgformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/svgformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/svgformat.so CMakeFiles/svgformat.dir/svgformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 34%] Built target svgformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/confabreport.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/confabreport.dir/build.make src/formats/CMakeFiles/confabreport.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 34%] Building CXX object src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtitleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/titleformat.dir/titleformat.cpp.o -MF CMakeFiles/titleformat.dir/titleformat.cpp.o.d -o CMakeFiles/titleformat.dir/titleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/titleformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/titleformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 34%] Linking CXX shared module ../../lib64/titleformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/titleformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/titleformat.so CMakeFiles/titleformat.dir/titleformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 34%] Built target titleformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 34%] Building CXX object src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpngformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pngformat.dir/pngformat.cpp.o -MF CMakeFiles/pngformat.dir/pngformat.cpp.o.d -o CMakeFiles/pngformat.dir/pngformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pngformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pngformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 34%] Building CXX object src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dconfabreport_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/confabreport.dir/confabreport.cpp.o -MF CMakeFiles/confabreport.dir/confabreport.cpp.o.d -o CMakeFiles/confabreport.dir/confabreport.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/confabreport.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/confabreport.cpp:34: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Linking CXX shared module ../../lib64/pngformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pngformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pngformat.so CMakeFiles/pngformat.dir/pngformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target pngformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/acesformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Linking CXX shared module ../../lib64/confabreport.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/confabreport.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/confabreport.so CMakeFiles/confabreport.dir/confabreport.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target confabreport make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Building CXX object src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacesformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acesformat.dir/acesformat.cpp.o -MF CMakeFiles/acesformat.dir/acesformat.cpp.o.d -o CMakeFiles/acesformat.dir/acesformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/acesformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/acesformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Building CXX object src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dabinitformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/abinitformat.dir/abinitformat.cpp.o -MF CMakeFiles/abinitformat.dir/abinitformat.cpp.o.d -o CMakeFiles/abinitformat.dir/abinitformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/abinitformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/abinitformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/abinitformat.cpp:171:15: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 171 | column = 0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/abinitformat.cpp:164:13: note: previous statement is here 164 | if (vs.size() < 3) | ^ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Linking CXX shared module ../../lib64/acesformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acesformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/acesformat.so CMakeFiles/acesformat.dir/acesformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Linking CXX shared module ../../lib64/abinitformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/abinitformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/abinitformat.so CMakeFiles/abinitformat.dir/abinitformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target acesformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target abinitformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Building CXX object src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Daoforceformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -MF CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o.d -o CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/aoforceformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/aoforceformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Linking CXX shared module ../../lib64/aoforceformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/aoforceformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/aoforceformat.so CMakeFiles/aoforceformat.dir/aoforceformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target aoforceformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Building CXX object src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dadfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/adfformat.dir/adfformat.cpp.o -MF CMakeFiles/adfformat.dir/adfformat.cpp.o.d -o CMakeFiles/adfformat.dir/adfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/adfformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/adfformat.cpp:35: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/adfformat.cpp:46: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Linking CXX shared module ../../lib64/adfformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/adfformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/adfformat.so CMakeFiles/adfformat.dir/adfformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target adfformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Building CXX object src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcastepformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/castepformat.dir/castepformat.cpp.o -MF CMakeFiles/castepformat.dir/castepformat.cpp.o.d -o CMakeFiles/castepformat.dir/castepformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/castepformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/castepformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 36%] Linking CXX shared module ../../lib64/castepformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/castepformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/castepformat.so CMakeFiles/castepformat.dir/castepformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 36%] Built target castepformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Building CXX object src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcrystal09format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crystal09format.dir/crystal09format.cpp.o -MF CMakeFiles/crystal09format.dir/crystal09format.cpp.o.d -o CMakeFiles/crystal09format.dir/crystal09format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/crystal09format.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/crystal09format.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 36%] Building CXX object src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddaltonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/daltonformat.dir/daltonformat.cpp.o -MF CMakeFiles/daltonformat.dir/daltonformat.cpp.o.d -o CMakeFiles/daltonformat.dir/daltonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/daltonformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/daltonformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/daltonformat.cpp:148:9: warning: variable 'atomcount' set but not used [-Wunused-but-set-variable] 148 | int atomcount = 0; // for each atom type | ^ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 37%] Linking CXX shared module ../../lib64/daltonformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/daltonformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/daltonformat.so CMakeFiles/daltonformat.dir/daltonformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 37%] Built target daltonformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 37%] Linking CXX shared module ../../lib64/crystal09format.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystal09format.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/crystal09format.so CMakeFiles/crystal09format.dir/crystal09format.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 37%] Built target crystal09format make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 37%] Building CXX object src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dmolformat.dir/dmolformat.cpp.o -MF CMakeFiles/dmolformat.dir/dmolformat.cpp.o.d -o CMakeFiles/dmolformat.dir/dmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dmolformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dmolformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Linking CXX shared module ../../lib64/dmolformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dmolformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/dmolformat.so CMakeFiles/dmolformat.dir/dmolformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Built target dmolformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Building CXX object src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfchkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fchkformat.dir/fchkformat.cpp.o -MF CMakeFiles/fchkformat.dir/fchkformat.cpp.o.d -o CMakeFiles/fchkformat.dir/fchkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:668:36: warning: 'bind2nd, int>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 668 | bind2nd(less_equal(), 0)) || | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:170:5: note: 'bind2nd, int>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:671:36: warning: 'bind2nd, int>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 671 | bind2nd(greater(), MxBond)) || | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:170:5: note: 'bind2nd, int>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:674:36: warning: 'bind2nd, int>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 674 | bind2nd(less(), 0)) || | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:170:5: note: 'bind2nd, int>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fchkformat.cpp:677:36: warning: 'bind2nd, int>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 677 | bind2nd(greater(), Natoms))) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:170:5: note: 'bind2nd, int>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 5 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Linking CXX shared module ../../lib64/fchkformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fchkformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fchkformat.so CMakeFiles/fchkformat.dir/fchkformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Built target fchkformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Building CXX object src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhiaimsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -MF CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o.d -o CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fhiaimsformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fhiaimsformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Linking CXX shared module ../../lib64/fhiaimsformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhiaimsformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fhiaimsformat.so CMakeFiles/fhiaimsformat.dir/fhiaimsformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Built target fhiaimsformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Building CXX object src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessformat.dir/gamessformat.cpp.o -MF CMakeFiles/gamessformat.dir/gamessformat.cpp.o.d -o CMakeFiles/gamessformat.dir/gamessformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessformat.cpp:233:9: warning: variable 'ndummyatoms' set but not used [-Wunused-but-set-variable] 233 | int ndummyatoms = 0; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 39%] Building CXX object src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgaussformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gaussformat.dir/gaussformat.cpp.o -MF CMakeFiles/gaussformat.dir/gaussformat.cpp.o.d -o CMakeFiles/gaussformat.dir/gaussformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gaussformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gaussformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gaussformat.cpp:339:17: warning: unused variable 'pg' [-Wunused-variable] 339 | const char *pg = obPG.IdentifyPointGroup(); | ^~ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Linking CXX shared module ../../lib64/gamessformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gamessformat.so CMakeFiles/gamessformat.dir/gamessformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Built target gamessformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Linking CXX shared module ../../lib64/gaussformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gaussformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gaussformat.so CMakeFiles/gaussformat.dir/gaussformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Built target gaussformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Building CXX object src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausscubeformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -MF CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o.d -o CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp:36: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp:36: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausscubeformat.cpp:114:17: warning: unused variable 'title' [-Wunused-variable] 114 | const char* title = pConv->GetTitle(); | ^~~~~ 4 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Building CXX object src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgausszmatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -MF CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o.d -o CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausszmatformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gausszmatformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Linking CXX shared module ../../lib64/gausscubeformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausscubeformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gausscubeformat.so CMakeFiles/gausscubeformat.dir/gausscubeformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Built target gausscubeformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Linking CXX shared module ../../lib64/gausszmatformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gausszmatformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gausszmatformat.so CMakeFiles/gausszmatformat.dir/gausszmatformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Built target gausszmatformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Building CXX object src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dhinformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/hinformat.dir/hinformat.cpp.o -MF CMakeFiles/hinformat.dir/hinformat.cpp.o.d -o CMakeFiles/hinformat.dir/hinformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/hinformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/hinformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Building CXX object src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgulpformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gulpformat.dir/gulpformat.cpp.o -MF CMakeFiles/gulpformat.dir/gulpformat.cpp.o.d -o CMakeFiles/gulpformat.dir/gulpformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gulpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gulpformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Linking CXX shared module ../../lib64/hinformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/hinformat.so CMakeFiles/hinformat.dir/hinformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Built target hinformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Linking CXX shared module ../../lib64/gulpformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gulpformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gulpformat.so CMakeFiles/gulpformat.dir/gulpformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Built target gulpformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Building CXX object src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Djaguarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -MF CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o.d -o CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/jaguarformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/jaguarformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Linking CXX shared module ../../lib64/jaguarformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/jaguarformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/jaguarformat.so CMakeFiles/jaguarformat.dir/jaguarformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Built target jaguarformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Building CXX object src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmolproformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/molproformat.dir/molproformat.cpp.o -MF CMakeFiles/molproformat.dir/molproformat.cpp.o.d -o CMakeFiles/molproformat.dir/molproformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/molproformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/molproformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Linking CXX shared module ../../lib64/molproformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/molproformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/molproformat.so CMakeFiles/molproformat.dir/molproformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Built target molproformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Building CXX object src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmopacformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mopacformat.dir/mopacformat.cpp.o -MF CMakeFiles/mopacformat.dir/mopacformat.cpp.o.d -o CMakeFiles/mopacformat.dir/mopacformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mopacformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mopacformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mopacformat.cpp:650:19: warning: variable 'isotopeMass' set but not used [-Wunused-but-set-variable] 650 | double x,y,z, isotopeMass; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Building CXX object src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dnwchemformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -MF CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o.d -o CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nwchemformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nwchemformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nwchemformat.cpp:310:9: warning: add explicit braces to avoid dangling else [-Wdangling-else] 310 | else if (vs[0][0] == '2') | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/nwchemformat.cpp:111:20: warning: unused variable 'BETA_ORBITAL_PATTERN' [-Wunused-variable] 111 | static const char* BETA_ORBITAL_PATTERN = "Beta"; | ^~~~~~~~~~~~~~~~~~~~ 3 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Linking CXX shared module ../../lib64/mopacformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mopacformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mopacformat.so CMakeFiles/mopacformat.dir/mopacformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Built target mopacformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Linking CXX shared module ../../lib64/nwchemformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/nwchemformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/nwchemformat.so CMakeFiles/nwchemformat.dir/nwchemformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Built target nwchemformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Building CXX object src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpwscfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -MF CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o.d -o CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pwscfformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pwscfformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 43%] Linking CXX shared module ../../lib64/pwscfformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pwscfformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pwscfformat.so CMakeFiles/pwscfformat.dir/pwscfformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 43%] Built target pwscfformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Building CXX object src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dqchemformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/qchemformat.dir/qchemformat.cpp.o -MF CMakeFiles/qchemformat.dir/qchemformat.cpp.o.d -o CMakeFiles/qchemformat.dir/qchemformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/qchemformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/qchemformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Linking CXX shared module ../../lib64/qchemformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/qchemformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/qchemformat.so CMakeFiles/qchemformat.dir/qchemformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Built target qchemformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Building CXX object src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsiestaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/siestaformat.dir/siestaformat.cpp.o -MF CMakeFiles/siestaformat.dir/siestaformat.cpp.o.d -o CMakeFiles/siestaformat.dir/siestaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp:92:10: warning: variable 'coordsAreAngstrom' set but not used [-Wunused-but-set-variable] 92 | bool coordsAreAngstrom = false; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp:98:12: warning: variable 'size' set but not used [-Wunused-but-set-variable] 98 | size_t size; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/siestaformat.cpp:102:30: warning: unused variable 'numSpecies' [-Wunused-variable] 102 | int atomicNum, numAtoms, numSpecies; | ^~~~~~~~~~ 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Linking CXX shared module ../../lib64/siestaformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/siestaformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/siestaformat.so CMakeFiles/siestaformat.dir/siestaformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Built target siestaformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Building CXX object src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dturbomoleformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -MF CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o.d -o CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/turbomoleformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/turbomoleformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Linking CXX shared module ../../lib64/turbomoleformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/turbomoleformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/turbomoleformat.so CMakeFiles/turbomoleformat.dir/turbomoleformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Built target turbomoleformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Building CXX object src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxsfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xsfformat.dir/xsfformat.cpp.o -MF CMakeFiles/xsfformat.dir/xsfformat.cpp.o.d -o CMakeFiles/xsfformat.dir/xsfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xsfformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xsfformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Linking CXX shared module ../../lib64/xsfformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xsfformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/xsfformat.so CMakeFiles/xsfformat.dir/xsfformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Built target xsfformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Building CXX object src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dvaspformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/vaspformat.dir/vaspformat.cpp.o -MF CMakeFiles/vaspformat.dir/vaspformat.cpp.o.d -o CMakeFiles/vaspformat.dir/vaspformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp:451:17: warning: unused variable 'freqnum' [-Wunused-variable] 451 | int freqnum = atoi(vs[0].c_str()); | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp:535:28: warning: 'bind2nd, double>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 535 | std::bind2nd(std::not_equal_to(), 0.0)); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:170:5: note: 'bind2nd, double>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/vaspformat.cpp:589:29: warning: 'bind2nd, double>' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 589 | std::bind2nd(std::divides(), max / 100.0)); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/backward/binders.h:170:5: note: 'bind2nd, double>' has been explicitly marked deprecated here 170 | _GLIBCXX11_DEPRECATED_SUGGEST("std::bind") | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1955:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST' 1955 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT) | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1947:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST' 1947 | __attribute__ ((__deprecated__ ("use '" ALT "' instead"))) | ^ 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Building CXX object src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dzindoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/zindoformat.dir/zindoformat.cpp.o -MF CMakeFiles/zindoformat.dir/zindoformat.cpp.o.d -o CMakeFiles/zindoformat.dir/zindoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/zindoformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/zindoformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Linking CXX shared module ../../lib64/zindoformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/zindoformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/zindoformat.so CMakeFiles/zindoformat.dir/zindoformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target zindoformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Linking CXX shared module ../../lib64/vaspformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/vaspformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/vaspformat.so CMakeFiles/vaspformat.dir/vaspformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target vaspformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Building CXX object src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgamessukformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -MF CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o.d -o CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:787:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 787 | bool ok=false; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:853:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 853 | bool ok=false; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:900:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 900 | bool ok=false; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gamessukformat.cpp:1215:12: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 1215 | bool ok; | ^ 5 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Linking CXX shared module ../../lib64/gamessukformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessukformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gamessukformat.so CMakeFiles/gamessukformat.dir/gamessukformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target gamessukformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Building CXX object src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dorcaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/orcaformat.dir/orcaformat.cpp.o -MF CMakeFiles/orcaformat.dir/orcaformat.cpp.o.d -o CMakeFiles/orcaformat.dir/orcaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/orcaformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/orcaformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/orcaformat.cpp:131:12: warning: unused variable 'energy' [-Wunused-variable] 131 | double energy=0; | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/orcaformat.cpp:138:9: warning: variable 'nModeAll' set but not used [-Wunused-but-set-variable] 138 | int nModeAll = 0; | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Building CXX object src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DAPIInterface_EXPORTS -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/APIInterface.dir/APIInterface.cpp.o -MF CMakeFiles/APIInterface.dir/APIInterface.cpp.o.d -o CMakeFiles/APIInterface.dir/APIInterface.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/APIInterface.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/APIInterface.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Linking CXX shared module ../../lib64/APIInterface.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/APIInterface.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/APIInterface.so CMakeFiles/APIInterface.dir/APIInterface.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target APIInterface make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Building CXX object src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DCSRformat_EXPORTS -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/CSRformat.dir/CSRformat.cpp.o -MF CMakeFiles/CSRformat.dir/CSRformat.cpp.o.d -o CMakeFiles/CSRformat.dir/CSRformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/CSRformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/CSRformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Linking CXX shared module ../../lib64/orcaformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/orcaformat.so CMakeFiles/orcaformat.dir/orcaformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target orcaformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Linking CXX shared module ../../lib64/CSRformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/CSRformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/CSRformat.so CMakeFiles/CSRformat.dir/CSRformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target CSRformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Building CXX object src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DPQSformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/PQSformat.dir/PQSformat.cpp.o -MF CMakeFiles/PQSformat.dir/PQSformat.cpp.o.d -o CMakeFiles/PQSformat.dir/PQSformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/PQSformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/PQSformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 47%] Linking CXX shared module ../../lib64/PQSformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/PQSformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/PQSformat.so CMakeFiles/PQSformat.dir/PQSformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 47%] Built target PQSformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 47%] Building CXX object src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dalchemyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -MF CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o.d -o CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/alchemyformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/alchemyformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 48%] Linking CXX shared module ../../lib64/alchemyformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/alchemyformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/alchemyformat.so CMakeFiles/alchemyformat.dir/alchemyformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 48%] Built target alchemyformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Building CXX object src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dacrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/acrformat.dir/acrformat.cpp.o -MF CMakeFiles/acrformat.dir/acrformat.cpp.o.d -o CMakeFiles/acrformat.dir/acrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/acrformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/acrformat.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Linking CXX shared module ../../lib64/acrformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/acrformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/acrformat.so CMakeFiles/acrformat.dir/acrformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Built target acrformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 46%] Building CXX object src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DMCDLformat_EXPORTS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -MF CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o.d -o CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MCDLformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MCDLformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MCDLformat.cpp:287:13: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 287 | nt = 1; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/MCDLformat.cpp:283:9: note: previous statement is here 283 | if (jflag) | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Building CXX object src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Damberformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/amberformat.dir/amberformat.cpp.o -MF CMakeFiles/amberformat.dir/amberformat.cpp.o.d -o CMakeFiles/amberformat.dir/amberformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/amberformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/amberformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Linking CXX shared module ../../lib64/amberformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/amberformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/amberformat.so CMakeFiles/amberformat.dir/amberformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Built target amberformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Building CXX object src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbalstformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/balstformat.dir/balstformat.cpp.o -MF CMakeFiles/balstformat.dir/balstformat.cpp.o.d -o CMakeFiles/balstformat.dir/balstformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/balstformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/balstformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Linking CXX shared module ../../lib64/balstformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/balstformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/balstformat.so CMakeFiles/balstformat.dir/balstformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Built target balstformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Linking CXX shared module ../../lib64/MCDLformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/MCDLformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/MCDLformat.so CMakeFiles/MCDLformat.dir/MCDLformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Built target MCDLformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Building CXX object src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbgfformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/bgfformat.dir/bgfformat.cpp.o -MF CMakeFiles/bgfformat.dir/bgfformat.cpp.o.d -o CMakeFiles/bgfformat.dir/bgfformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/bgfformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/bgfformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Linking CXX shared module ../../lib64/bgfformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/bgfformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/bgfformat.so CMakeFiles/bgfformat.dir/bgfformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Built target bgfformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Building CXX object src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dboxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/boxformat.dir/boxformat.cpp.o -MF CMakeFiles/boxformat.dir/boxformat.cpp.o.d -o CMakeFiles/boxformat.dir/boxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/boxformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/boxformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Linking CXX shared module ../../lib64/boxformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/boxformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/boxformat.so CMakeFiles/boxformat.dir/boxformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Built target boxformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Building CXX object src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacaoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -MF CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o.d -o CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cacaoformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cacaoformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcacheformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cacheformat.dir/cacheformat.cpp.o -MF CMakeFiles/cacheformat.dir/cacheformat.cpp.o.d -o CMakeFiles/cacheformat.dir/cacheformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cacheformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cacheformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/cacheformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacheformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cacheformat.so CMakeFiles/cacheformat.dir/cacheformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/cacaoformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cacaoformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cacaoformat.so CMakeFiles/cacaoformat.dir/cacaoformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cacheformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cacaoformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcccformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cccformat.dir/cccformat.cpp.o -MF CMakeFiles/cccformat.dir/cccformat.cpp.o.d -o CMakeFiles/cccformat.dir/cccformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cccformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cccformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/cccformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cccformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cccformat.so CMakeFiles/cccformat.dir/cccformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cccformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/carformat.dir/carformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcarformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/carformat.dir/carformat.cpp.o -MF CMakeFiles/carformat.dir/carformat.cpp.o.d -o CMakeFiles/carformat.dir/carformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/carformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/carformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/carformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/carformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/carformat.so CMakeFiles/carformat.dir/carformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target carformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchem3dformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -MF CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o.d -o CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chem3dformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chem3dformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdrawct_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -MF CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o.d -o CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawct.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawct.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/chem3dformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chem3dformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chem3dformat.so CMakeFiles/chem3dformat.dir/chem3dformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target chem3dformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/chemdrawct.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawct.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemdrawct.so CMakeFiles/chemdrawct.dir/chemdrawct.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target chemdrawct make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemtoolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -MF CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o.d -o CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemtoolformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemtoolformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/chemtoolformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemtoolformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemtoolformat.so CMakeFiles/chemtoolformat.dir/chemtoolformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target chemtoolformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcofformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cofformat.dir/cofformat.cpp.o -MF CMakeFiles/cofformat.dir/cofformat.cpp.o.d -o CMakeFiles/cofformat.dir/cofformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cofformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cofformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cofformat.cpp:410:9: warning: unused variable 'nbonds' [-Wunused-variable] 410 | int nbonds = mol.NumBonds(); | ^~~~~~ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/cofformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cofformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cofformat.so CMakeFiles/cofformat.dir/cofformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cofformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcrkformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/crkformat.dir/crkformat.cpp.o -MF CMakeFiles/crkformat.dir/crkformat.cpp.o.d -o CMakeFiles/crkformat.dir/crkformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/crkformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/crkformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcifformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cifformat.dir/cifformat.cpp.o -MF CMakeFiles/cifformat.dir/cifformat.cpp.o.d -o CMakeFiles/cifformat.dir/cifformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:915:11: warning: variable 'aa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:915:14: warning: variable 'bb' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:915:27: warning: variable 'betaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:915:33: warning: variable 'gammaa' set but not used [-Wunused-but-set-variable] 915 | float aa,bb,cc,alphaa,betaa,gammaa;//reciprocal space parameters | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cifformat.cpp:1693:15: warning: unused label 'std' [-Wunused-label] 1693 | std:vector uc; | ^~~~ 6 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/crkformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/crkformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/crkformat.so CMakeFiles/crkformat.dir/crkformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target crkformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Building CXX object src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcssrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cssrformat.dir/cssrformat.cpp.o -MF CMakeFiles/cssrformat.dir/cssrformat.cpp.o.d -o CMakeFiles/cssrformat.dir/cssrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cssrformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/cssrformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/cssrformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cssrformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cssrformat.so CMakeFiles/cssrformat.dir/cssrformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cssrformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Linking CXX shared module ../../lib64/cifformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cifformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cifformat.so CMakeFiles/cifformat.dir/cifformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 52%] Built target cifformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 52%] Building CXX object src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Ddlpolyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -MF CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o.d -o CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dlpolyformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dlpolyformat.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/dlpolyformat.cpp:152:10: warning: variable 'ok' set but not used [-Wunused-but-set-variable] 152 | bool ok; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 52%] Linking CXX shared module ../../lib64/dlpolyformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/dlpolyformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/dlpolyformat.so CMakeFiles/dlpolyformat.dir/dlpolyformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 52%] Built target dlpolyformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 52%] Building CXX object src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dexyzformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/exyzformat.dir/exyzformat.cpp.o -MF CMakeFiles/exyzformat.dir/exyzformat.cpp.o.d -o CMakeFiles/exyzformat.dir/exyzformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/exyzformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/exyzformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/exyzformat.cpp:124:19: warning: variable 'virtualAtoms' set but not used [-Wunused-but-set-variable] 124 | bool unitCell,virtualAtoms; | ^ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Linking CXX shared module ../../lib64/exyzformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/exyzformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/exyzformat.so CMakeFiles/exyzformat.dir/exyzformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Built target exyzformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 52%] Building CXX object src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfastsearchformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -MF CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o.d -o CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fastsearchformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fastsearchformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Building CXX object src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfastaformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fastaformat.dir/fastaformat.cpp.o -MF CMakeFiles/fastaformat.dir/fastaformat.cpp.o.d -o CMakeFiles/fastaformat.dir/fastaformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fastaformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fastaformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Linking CXX shared module ../../lib64/fastsearchformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastsearchformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fastsearchformat.so CMakeFiles/fastsearchformat.dir/fastsearchformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Built target fastsearchformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Linking CXX shared module ../../lib64/fastaformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fastaformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fastaformat.so CMakeFiles/fastaformat.dir/fastaformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Built target fastaformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Building CXX object src/formats/CMakeFiles/featformat.dir/featformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfeatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/featformat.dir/featformat.cpp.o -MF CMakeFiles/featformat.dir/featformat.cpp.o.d -o CMakeFiles/featformat.dir/featformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/featformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/featformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Building CXX object src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfhformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fhformat.dir/fhformat.cpp.o -MF CMakeFiles/fhformat.dir/fhformat.cpp.o.d -o CMakeFiles/fhformat.dir/fhformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fhformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fhformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Linking CXX shared module ../../lib64/featformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/featformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/featformat.so CMakeFiles/featformat.dir/featformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 54%] Built target featformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 54%] Linking CXX shared module ../../lib64/fhformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fhformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fhformat.so CMakeFiles/fhformat.dir/fhformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 54%] Built target fhformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fpsformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 54%] Building CXX object src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfingerprintformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -MF CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o.d -o CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fingerprintformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fingerprintformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Building CXX object src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfpsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/fpsformat.dir/fpsformat.cpp.o -MF CMakeFiles/fpsformat.dir/fpsformat.cpp.o.d -o CMakeFiles/fpsformat.dir/fpsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fpsformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fpsformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/fpsformat.cpp:175:10: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 175 | size_t time_res; /* Result of strftime */ | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Linking CXX shared module ../../lib64/fingerprintformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fingerprintformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fingerprintformat.so CMakeFiles/fingerprintformat.dir/fingerprintformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Built target fingerprintformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Linking CXX shared module ../../lib64/fpsformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/fpsformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/fpsformat.so CMakeFiles/fpsformat.dir/fpsformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Built target fpsformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Building CXX object src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dfreefracformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/freefracformat.dir/freefracformat.cpp.o -MF CMakeFiles/freefracformat.dir/freefracformat.cpp.o.d -o CMakeFiles/freefracformat.dir/freefracformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/freefracformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/freefracformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Building CXX object src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dghemicalformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -MF CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o.d -o CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/ghemicalformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/ghemicalformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Linking CXX shared module ../../lib64/freefracformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/freefracformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/freefracformat.so CMakeFiles/freefracformat.dir/freefracformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Built target freefracformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Linking CXX shared module ../../lib64/ghemicalformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/ghemicalformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/ghemicalformat.so CMakeFiles/ghemicalformat.dir/ghemicalformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Built target ghemicalformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Building CXX object src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgromos96format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/gromos96format.dir/gromos96format.cpp.o -MF CMakeFiles/gromos96format.dir/gromos96format.cpp.o.d -o CMakeFiles/gromos96format.dir/gromos96format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gromos96format.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/gromos96format.cpp:54: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Linking CXX shared module ../../lib64/gromos96format.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/gromos96format.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/gromos96format.so CMakeFiles/gromos96format.dir/gromos96format.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Built target gromos96format make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Building CXX object src/formats/CMakeFiles/groformat.dir/groformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dgroformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/groformat.dir/groformat.cpp.o -MF CMakeFiles/groformat.dir/groformat.cpp.o.d -o CMakeFiles/groformat.dir/groformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/groformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/groformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Linking CXX shared module ../../lib64/groformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/groformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/groformat.so CMakeFiles/groformat.dir/groformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Built target groformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Building CXX object src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dlmpdatformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -MF CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o.d -o CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp:277:13: warning: unused variable 'length' [-Wunused-variable] 277 | double length=cmax-cmin; | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp:367:11: warning: unused variable 'atomid' [-Wunused-variable] 367 | int atomid=5; | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lmpdatformat.cpp:368:14: warning: unused variable 'charge' [-Wunused-variable] 368 | double charge=0.5; | ^~~~~~ 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Linking CXX shared module ../../lib64/lmpdatformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lmpdatformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/lmpdatformat.so CMakeFiles/lmpdatformat.dir/lmpdatformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Built target lmpdatformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Building CXX object src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dlpmdformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -MF CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o.d -o CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp:243:11: warning: unused variable 'FX' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp:243:32: warning: unused variable 'FY' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/lpmdformat.cpp:243:53: warning: unused variable 'FZ' [-Wunused-variable] 243 | double FX = AX/mass; double FY = AY/mass; double FZ = AZ/mass; | ^~ 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Linking CXX shared module ../../lib64/lpmdformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/lpmdformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/lpmdformat.so CMakeFiles/lpmdformat.dir/lpmdformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Built target lpmdformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Building CXX object src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmdffformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mdffformat.dir/mdffformat.cpp.o -MF CMakeFiles/mdffformat.dir/mdffformat.cpp.o.d -o CMakeFiles/mdffformat.dir/mdffformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdffformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdffformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdffformat.cpp:125:18: warning: variable 'totalAtoms' set but not used [-Wunused-but-set-variable] 125 | unsigned int totalAtoms = 0, atomCount = 0; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mdffformat.cpp:136:50: warning: variable 'path' is uninitialized when used within its own initialization [-Wuninitialized] 136 | string path = (found == string::npos) ? "" : path.substr(0, found); | ~~~~ ^~~~ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 58%] Linking CXX shared module ../../lib64/mdffformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdffformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mdffformat.so CMakeFiles/mdffformat.dir/mdffformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 58%] Built target mdffformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Building CXX object src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmmcifformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -MF CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o.d -o CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmcifformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmcifformat.cpp:19: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Building CXX object src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmmodformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mmodformat.dir/mmodformat.cpp.o -MF CMakeFiles/mmodformat.dir/mmodformat.cpp.o.d -o CMakeFiles/mmodformat.dir/mmodformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:95:14: warning: variable 'natoms' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 95 | if ( !vs.empty() && vs.size() > 0) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:98:13: note: uninitialized use occurs here 98 | if (natoms == 0) | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:95:9: note: remove the 'if' if its condition is always true 95 | if ( !vs.empty() && vs.size() > 0) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 | sscanf(buffer,"%i%*s",&natoms); /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:95:14: warning: variable 'natoms' is used uninitialized whenever '&&' condition is false [-Wsometimes-uninitialized] 95 | if ( !vs.empty() && vs.size() > 0) | ^~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:98:13: note: uninitialized use occurs here 98 | if (natoms == 0) | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:95:14: note: remove the '&&' if its condition is always true 95 | if ( !vs.empty() && vs.size() > 0) | ^~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mmodformat.cpp:87:15: note: initialize the variable 'natoms' to silence this warning 87 | int natoms; | ^ | = 0 3 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Linking CXX shared module ../../lib64/mmodformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmodformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mmodformat.so CMakeFiles/mmodformat.dir/mmodformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Built target mmodformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Linking CXX shared module ../../lib64/mmcifformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mmcifformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mmcifformat.so CMakeFiles/mmcifformat.dir/mmcifformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Built target mmcifformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Building CXX object src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmpdformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpdformat.dir/mpdformat.cpp.o -MF CMakeFiles/mpdformat.dir/mpdformat.cpp.o.d -o CMakeFiles/mpdformat.dir/mpdformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpdformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpdformat.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpdformat.cpp:210:42: warning: variable 'idx_true' set but not used [-Wunused-but-set-variable] 210 | bool xml_true=false, pre_true=false, idx_true=false; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Linking CXX shared module ../../lib64/mpdformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpdformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mpdformat.so CMakeFiles/mpdformat.dir/mpdformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Built target mpdformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Building CXX object src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmoldenformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/moldenformat.dir/moldenformat.cpp.o -MF CMakeFiles/moldenformat.dir/moldenformat.cpp.o.d -o CMakeFiles/moldenformat.dir/moldenformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/moldenformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/moldenformat.cpp:35: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Building CXX object src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmpqcformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -MF CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o.d -o CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpqcformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/mpqcformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 60%] Linking CXX shared module ../../lib64/moldenformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldenformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/moldenformat.so CMakeFiles/moldenformat.dir/moldenformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Built target moldenformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Linking CXX shared module ../../lib64/mpqcformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/mpqcformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/mpqcformat.so CMakeFiles/mpqcformat.dir/mpqcformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Built target mpqcformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Building CXX object src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmsmsformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msmsformat.dir/msmsformat.cpp.o -MF CMakeFiles/msmsformat.dir/msmsformat.cpp.o.d -o CMakeFiles/msmsformat.dir/msmsformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msmsformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msmsformat.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Building CXX object src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dmsiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/msiformat.dir/msiformat.cpp.o -MF CMakeFiles/msiformat.dir/msiformat.cpp.o.d -o CMakeFiles/msiformat.dir/msiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msiformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msiformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/msiformat.cpp:77:17: warning: unused variable 'title' [-Wunused-variable] 77 | const char* title = pConv->GetTitle(); | ^~~~~ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Linking CXX shared module ../../lib64/msmsformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msmsformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/msmsformat.so CMakeFiles/msmsformat.dir/msmsformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Built target msmsformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Linking CXX shared module ../../lib64/msiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/msiformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/msiformat.so CMakeFiles/msiformat.dir/msiformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Built target msiformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Building CXX object src/formats/CMakeFiles/outformat.dir/outformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Doutformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/outformat.dir/outformat.cpp.o -MF CMakeFiles/outformat.dir/outformat.cpp.o.d -o CMakeFiles/outformat.dir/outformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/outformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/outformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Building CXX object src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dopendxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/opendxformat.dir/opendxformat.cpp.o -MF CMakeFiles/opendxformat.dir/opendxformat.cpp.o.d -o CMakeFiles/opendxformat.dir/opendxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/opendxformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/opendxformat.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/opendxformat.cpp:29: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/opendxformat.cpp:29: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Linking CXX shared module ../../lib64/outformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/outformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/outformat.so CMakeFiles/outformat.dir/outformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target outformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Linking CXX shared module ../../lib64/opendxformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/opendxformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/opendxformat.so CMakeFiles/opendxformat.dir/opendxformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target opendxformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Building CXX object src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpcmodelformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -MF CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o.d -o CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pcmodelformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pcmodelformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Linking CXX shared module ../../lib64/pcmodelformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pcmodelformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pcmodelformat.so CMakeFiles/pcmodelformat.dir/pcmodelformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target pcmodelformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Building CXX object src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpointcloudformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -MF CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o.d -o CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pointcloudformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pointcloudformat.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pointcloudformat.cpp:191:9: warning: variable 'total_points' set but not used [-Wunused-but-set-variable] 191 | int total_points = 0; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Linking CXX shared module ../../lib64/pointcloudformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pointcloudformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pointcloudformat.so CMakeFiles/pointcloudformat.dir/pointcloudformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target pointcloudformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Building CXX object src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpdbqtformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -MF CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o.d -o CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp:24: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp:581:20: warning: unused variable 'child' [-Wunused-variable] 581 | unsigned int child=i; | ^~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp:797:9: warning: unused variable 'fragments' [-Wunused-variable] 797 | int fragments = 0; | ^~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pdbqtformat.cpp:750:16: warning: unused function 'AtomsSoFar' [-Wunused-function] 750 | unsigned int AtomsSoFar(const map & tree, unsigned int depth) | ^~~~~~~~~~ 4 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Building CXX object src/formats/CMakeFiles/posformat.dir/posformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dposformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/posformat.dir/posformat.cpp.o -MF CMakeFiles/posformat.dir/posformat.cpp.o.d -o CMakeFiles/posformat.dir/posformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/posformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/posformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Linking CXX shared module ../../lib64/posformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/posformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/posformat.so CMakeFiles/posformat.dir/posformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target posformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Linking CXX shared module ../../lib64/pdbqtformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pdbqtformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pdbqtformat.so CMakeFiles/pdbqtformat.dir/pdbqtformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target pdbqtformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Building CXX object src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dshelxformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/shelxformat.dir/shelxformat.cpp.o -MF CMakeFiles/shelxformat.dir/shelxformat.cpp.o.d -o CMakeFiles/shelxformat.dir/shelxformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/shelxformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/shelxformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Linking CXX shared module ../../lib64/shelxformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/shelxformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/shelxformat.so CMakeFiles/shelxformat.dir/shelxformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target shelxformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Building CXX object src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpqrformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pqrformat.dir/pqrformat.cpp.o -MF CMakeFiles/pqrformat.dir/pqrformat.cpp.o.d -o CMakeFiles/pqrformat.dir/pqrformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pqrformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pqrformat.cpp:16: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pqrformat.cpp:207:13: warning: unused variable 'atom' [-Wunused-variable] 207 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/pqrformat.cpp:222:13: warning: unused variable 'atom' [-Wunused-variable] 222 | OBAtom *atom = mol.GetAtom(mol.NumAtoms()); | ^~~~ 3 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Linking CXX shared module ../../lib64/pqrformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pqrformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pqrformat.so CMakeFiles/pqrformat.dir/pqrformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target pqrformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Building CXX object src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dstlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/stlformat.dir/stlformat.cpp.o -MF CMakeFiles/stlformat.dir/stlformat.cpp.o.d -o CMakeFiles/stlformat.dir/stlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/stlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/stlformat.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Building CXX object src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dsmileyformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/smileyformat.dir/smileyformat.cpp.o -MF CMakeFiles/smileyformat.dir/smileyformat.cpp.o.d -o CMakeFiles/smileyformat.dir/smileyformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp:158:15: warning: 58 enumeration values not handled in switch: 'NotChiral', 'TH1', 'TH2'... [-Wswitch] 158 | switch (chirality) { | ^~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp:26: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:977:13: warning: field 'isExplicit' will be initialized after field 'pos' [-Wreorder-ctor] 975 | bool isExplicit_, std::size_t pos_) : number(number_), | ~~~~~~~~~~~~~~ | pos(pos_ 976 | order(order_), isUp(isUp_), isDown(isDown_), | ~~~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~~~~~ | number(number_ order(order_ isUp(isUp_ 977 | isExplicit(isExplicit_), pos(pos_) | ^~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~ | isDown(isDown_ isExplicit(isExplicit_ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:2409:41: note: in instantiation of member function 'Smiley::Parser::RingBondInfo::RingBondInfo' requested here 2409 | m_ringBonds[m_prev].push_back(RingBondInfo(rnum, m_bondOrder, m_isUp, m_isDown, m_explicitBond, pos)); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:2429:11: note: in instantiation of member function 'Smiley::Parser::processRingBond' requested here 2429 | processRingBond(m_str[m_pos] - '0', m_pos); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:2507:13: note: in instantiation of member function 'Smiley::Parser::parseRingBond' requested here 2507 | parseRingBond(); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smiley.h:2698:9: note: in instantiation of member function 'Smiley::Parser::parseChain' requested here 2698 | parseChain(); | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/smileyformat.cpp:370:14: note: in instantiation of member function 'Smiley::Parser::parse' requested here 370 | parser.parse(smiles); | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Linking CXX shared module ../../lib64/stlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/stlformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/stlformat.so CMakeFiles/stlformat.dir/stlformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Built target stlformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Linking CXX shared module ../../lib64/smileyformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/smileyformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/smileyformat.so CMakeFiles/smileyformat.dir/smileyformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Built target smileyformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Building CXX object src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dthermoformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/thermoformat.dir/thermoformat.cpp.o -MF CMakeFiles/thermoformat.dir/thermoformat.cpp.o.d -o CMakeFiles/thermoformat.dir/thermoformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/thermoformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/thermoformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Linking CXX shared module ../../lib64/thermoformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/thermoformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/thermoformat.so CMakeFiles/thermoformat.dir/thermoformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Built target thermoformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Building CXX object src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dtinkerformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -MF CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o.d -o CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp:416:31: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] 416 | countNeighborC++; break; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp:415:11: note: previous statement is here 415 | if (b->GetHyb() == 2) // S=C | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/tinkerformat.cpp:259:20: warning: unused variable 'i' [-Wunused-variable] 259 | OBBondIterator i, j; | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Linking CXX shared module ../../lib64/tinkerformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinkerformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/tinkerformat.so CMakeFiles/tinkerformat.dir/tinkerformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Built target tinkerformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Building CXX object src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dunichemformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/unichemformat.dir/unichemformat.cpp.o -MF CMakeFiles/unichemformat.dir/unichemformat.cpp.o.d -o CMakeFiles/unichemformat.dir/unichemformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/unichemformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/unichemformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 64%] Linking CXX shared module ../../lib64/unichemformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/unichemformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/unichemformat.so CMakeFiles/unichemformat.dir/unichemformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 64%] Built target unichemformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Building CXX object src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dviewmolformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -MF CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o.d -o CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/viewmolformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/viewmolformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Linking CXX shared module ../../lib64/viewmolformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/viewmolformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/viewmolformat.so CMakeFiles/viewmolformat.dir/viewmolformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Built target viewmolformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dwlnformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wlnformat.cpp.o -MF CMakeFiles/wlnformat.dir/wlnformat.cpp.o.d -o CMakeFiles/wlnformat.dir/wlnformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/wlnformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/wlnformat.cpp:18: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/wlnformat.cpp:138:17: warning: unused variable 'title' [-Wunused-variable] 138 | const char* title = pConv->GetTitle(); | ^~~~~ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Building CXX object src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxedformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xedformat.dir/xedformat.cpp.o -MF CMakeFiles/xedformat.dir/xedformat.cpp.o.d -o CMakeFiles/xedformat.dir/xedformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xedformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xedformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Linking CXX shared module ../../lib64/xedformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xedformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/xedformat.so CMakeFiles/xedformat.dir/xedformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Built target xedformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Building CXX object src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dwlnformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -MF CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o.d -o CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/wln-nextmove.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Linking CXX shared module ../../lib64/wlnformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/wlnformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/wlnformat.so CMakeFiles/wlnformat.dir/wlnformat.cpp.o "CMakeFiles/wlnformat.dir/wln-nextmove.cpp.o" -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Built target wlnformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Building CXX object src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxyzformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xyzformat.dir/xyzformat.cpp.o -MF CMakeFiles/xyzformat.dir/xyzformat.cpp.o.d -o CMakeFiles/xyzformat.dir/xyzformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xyzformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xyzformat.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Linking CXX shared module ../../lib64/xyzformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xyzformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/xyzformat.so CMakeFiles/xyzformat.dir/xyzformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Built target xyzformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Building CXX object src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dyasaraformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -MF CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o.d -o CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/yasaraformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/yasaraformat.cpp:34: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/yasaraformat.cpp:374:21: warning: variable 'reslen' set but not used [-Wunused-but-set-variable] 374 | int /*samenames,*/reslen,charged; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/yasaraformat.cpp:497:29: warning: unused variable 'e' [-Wunused-variable] 497 | vector::iterator e; | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Linking CXX shared module ../../lib64/yasaraformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/yasaraformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/yasaraformat.so CMakeFiles/yasaraformat.dir/yasaraformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Built target yasaraformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Building CXX object src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Drxnformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rxnformat.dir/rxnformat.cpp.o -MF CMakeFiles/rxnformat.dir/rxnformat.cpp.o.d -o CMakeFiles/rxnformat.dir/rxnformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rxnformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rxnformat.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 67%] Linking CXX shared module ../../lib64/rxnformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/rxnformat.so CMakeFiles/rxnformat.dir/rxnformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 67%] Built target rxnformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 67%] Building CXX object src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdrawcdx_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -MF CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o.d -o CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:25: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:477:27: warning: variable 'hasElement' set but not used [-Wunused-but-set-variable] 477 | bool isAlias=false, hasElement=false; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemdrawcdx.cpp:47:34: warning: unused function 'bswap_64' [-Wunused-function] 47 | static inline unsigned long long bswap_64(unsigned long long x) { | ^~~~~~~~ 5 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 67%] Linking CXX shared module ../../lib64/chemdrawcdx.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdrawcdx.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemdrawcdx.so CMakeFiles/chemdrawcdx.dir/chemdrawcdx.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 67%] Built target chemdrawcdx make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/rinchiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 67%] Building CXX object src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemkinformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -MF CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o.d -o CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:31: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:911:12: warning: enumeration values 'ARRHENIUS' and 'THREEBODY' not handled in switch [-Wswitch] 911 | switch(pRD->ReactionType) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/chemkinformat.cpp:990:12: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] 990 | switch(pRD->ReactionType) | ^~~~~~~~~~~~~~~~~ 5 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 68%] Building CXX object src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Drinchiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -MF CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o.d -o CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rinchiformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rinchiformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 69%] Linking CXX shared module ../../lib64/rinchiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rinchiformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/rinchiformat.so CMakeFiles/rinchiformat.dir/rinchiformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 69%] Built target rinchiformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/rsmiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 69%] Linking CXX shared module ../../lib64/chemkinformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemkinformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemkinformat.so CMakeFiles/chemkinformat.dir/chemkinformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 69%] Built target chemkinformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 69%] Building CXX object src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Drsmiformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -MF CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o.d -o CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rsmiformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rsmiformat.cpp:23: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rsmiformat.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/rsmiformat.cpp:24: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 69%] Building CXX object src/formats/CMakeFiles/png2format.dir/png2format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpng2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/png2format.dir/png2format.cpp.o -MF CMakeFiles/png2format.dir/png2format.cpp.o.d -o CMakeFiles/png2format.dir/png2format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/png2format.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/png2format.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 70%] Linking CXX shared module ../../lib64/rsmiformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/rsmiformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/rsmiformat.so CMakeFiles/rsmiformat.dir/rsmiformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 70%] Built target rsmiformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 70%] Building CXX object src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpng2format_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -MF CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o.d -o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/depict/cairopainter.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 70%] Linking CXX shared module ../../lib64/png2format.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/png2format.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/png2format.so CMakeFiles/png2format.dir/png2format.cpp.o CMakeFiles/png2format.dir/__/depict/cairopainter.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 70%] Built target png2format make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 70%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cdxmlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cdxmlformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 71%] Building CXX object src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcdxmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 72%] Linking CXX shared module ../../lib64/cdxmlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cdxmlformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cdxmlformat.so CMakeFiles/cdxmlformat.dir/xml/cdxmlformat.cpp.o CMakeFiles/cdxmlformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 72%] Built target cdxmlformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pubchem.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 72%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpubchem_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -MF CMakeFiles/pubchem.dir/xml/pubchem.cpp.o.d -o CMakeFiles/pubchem.dir/xml/pubchem.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/pubchem.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/pubchem.cpp:17: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 71%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -MF CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:1269:26: warning: unused variable 'C_TITLE' [-Wunused-variable] 1269 | static const xmlChar C_TITLE[] = "title"; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:1319:12: warning: variable 'time_res' set but not used [-Wunused-but-set-variable] 1319 | size_t time_res; /* Result of strftime */ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:1366:26: warning: unused variable 'C_DESCRIPTION' [-Wunused-variable] 1366 | static const xmlChar C_DESCRIPTION[] = "description"; | ^~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:2308:26: warning: unused variable 'C_SCALAR' [-Wunused-variable] 2308 | static const xmlChar C_SCALAR[] = "scalar"; | ^~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlformat.cpp:201:54: warning: private field 'TransformsNeeded' is not used [-Wunused-private-field] 201 | int CrystalScalarsNeeded, PropertyScalarsNeeded, TransformsNeeded; | ^ 8 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 73%] Building CXX object src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpubchem_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchem.dir/xml/xml.cpp.o -MF CMakeFiles/pubchem.dir/xml/xml.cpp.o.d -o CMakeFiles/pubchem.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 73%] Linking CXX shared module ../../lib64/pubchem.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchem.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pubchem.so CMakeFiles/pubchem.dir/xml/pubchem.cpp.o CMakeFiles/pubchem.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 73%] Built target pubchem make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/xmlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xmlformat.dir/build.make src/formats/CMakeFiles/xmlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 73%] Building CXX object src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xmlformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xmlformat.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Building CXX object src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dxmlformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/xmlformat.dir/xml/xml.cpp.o -MF CMakeFiles/xmlformat.dir/xml/xml.cpp.o.d -o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Linking CXX shared module ../../lib64/xmlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/xmlformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/xmlformat.so CMakeFiles/xmlformat.dir/xml/xmlformat.cpp.o CMakeFiles/xmlformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Built target xmlformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cmlreactformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cmlreactformat.dir/build.make src/formats/CMakeFiles/cmlreactformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Linking CXX shared module ../../lib64/cmlformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cmlformat.so CMakeFiles/cmlformat.dir/xml/cmlformat.cpp.o CMakeFiles/cmlformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Built target cmlformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemdoodlejsonformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemdoodlejsonformat.dir/build.make src/formats/CMakeFiles/chemdoodlejsonformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:20: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:20: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:610:10: warning: variable 'mollistPos' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] 610 | if(reaclistPos!=string::npos) | ^~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:616:25: note: uninitialized use occurs here 616 | << s.substr(mollistPos, footerPos-mollistPos) //moleculeList | ^~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:610:7: note: remove the 'if' if its condition is always true 610 | if(reaclistPos!=string::npos) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 | mollistPos = s.find("ReactionType) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:734:10: warning: enumeration values 'ARRHENIUS' and 'SRI' not handled in switch [-Wswitch] 734 | switch(pRD->ReactionType) | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:773:26: warning: unused variable 'C_TITLE' [-Wunused-variable] 773 | static const xmlChar C_TITLE[] = "title"; | ^~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/cmlreactformat.cpp:111:8: warning: private field 'MolsHaveBeenAdded' is not used [-Wunused-private-field] 111 | bool MolsHaveBeenAdded; //separate OBMols during output | ^ 8 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Building CXX object src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dchemdoodlejsonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -MF CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o.d -o CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/json/chemdoodlejsonformat.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/json/chemdoodlejsonformat.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Building CXX object src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dcmlreactformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -MF CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o.d -o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/xml/xml.cpp:15: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/xml.h:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 74%] Linking CXX shared module ../../lib64/chemdoodlejsonformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdoodlejsonformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/chemdoodlejsonformat.so CMakeFiles/chemdoodlejsonformat.dir/json/chemdoodlejsonformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 75%] Built target chemdoodlejsonformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pubchemjsonformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pubchemjsonformat.dir/build.make src/formats/CMakeFiles/pubchemjsonformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 75%] Linking CXX shared module ../../lib64/cmlreactformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/cmlreactformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/cmlreactformat.so CMakeFiles/cmlreactformat.dir/xml/cmlreactformat.cpp.o CMakeFiles/cmlreactformat.dir/xml/xml.cpp.o -lm -ldl -lz -lcairo -linchi -lm -lxml2 ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 75%] Built target cmlreactformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obabel.dir/build.make tools/CMakeFiles/obabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 75%] Building CXX object tools/CMakeFiles/obabel.dir/obabel.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obabel.dir/obabel.cpp.o -MF CMakeFiles/obabel.dir/obabel.cpp.o.d -o CMakeFiles/obabel.dir/obabel.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obabel.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obabel.cpp:43: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 76%] Linking CXX executable ../bin/obabel cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obabel.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obabel.dir/obabel.cpp.o -o ../bin/obabel ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 76%] Built target obabel make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obconformer.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obconformer.dir/build.make tools/CMakeFiles/obconformer.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 76%] Building CXX object tools/CMakeFiles/obconformer.dir/obconformer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obconformer.dir/obconformer.cpp.o -MF CMakeFiles/obconformer.dir/obconformer.cpp.o.d -o CMakeFiles/obconformer.dir/obconformer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obconformer.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obconformer.cpp:25: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/forcefield.h:28: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 76%] Linking CXX executable ../bin/obconformer cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obconformer.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obconformer.dir/obconformer.cpp.o -o ../bin/obconformer ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 76%] Built target obconformer make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obenergy.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obenergy.dir/build.make tools/CMakeFiles/obenergy.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 75%] Building CXX object src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/clang++ -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dpubchemjsonformat_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/cairo -I/usr/include/inchi -I/usr/include/libxml2 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT src/formats/CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -MF CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o.d -o CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/json/pubchemjsonformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/json/pubchemjsonformat.cpp:21: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obmolecformat.h:36: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Building CXX object tools/CMakeFiles/obenergy.dir/obenergy.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obenergy.dir/obenergy.cpp.o -MF CMakeFiles/obenergy.dir/obenergy.cpp.o.d -o CMakeFiles/obenergy.dir/obenergy.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obenergy.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obenergy.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obenergy.cpp:117:12: warning: variable 'c' set but not used [-Wunused-but-set-variable] 117 | for (int c = 1;; c++) { | ^ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Linking CXX executable ../bin/obenergy cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obenergy.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obenergy.dir/obenergy.cpp.o -o ../bin/obenergy ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Built target obenergy make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obfit.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obfit.dir/build.make tools/CMakeFiles/obfit.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Building CXX object tools/CMakeFiles/obfit.dir/obfit.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obfit.dir/obfit.cpp.o -MF CMakeFiles/obfit.dir/obfit.cpp.o.d -o CMakeFiles/obfit.dir/obfit.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obfit.cpp:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Linking CXX shared module ../../lib64/pubchemjsonformat.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats && /usr/bin/cmake -E cmake_link_script CMakeFiles/pubchemjsonformat.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../../lib64/pubchemjsonformat.so CMakeFiles/pubchemjsonformat.dir/json/pubchemjsonformat.cpp.o -lm -ldl -lz -lcairo -linchi -lm ../../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Built target pubchemjsonformat make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obfitall.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obfitall.dir/build.make tools/CMakeFiles/obfitall.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Linking CXX executable ../bin/obfit cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfit.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obfit.dir/obfit.cpp.o -o ../bin/obfit ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Built target obfit make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obgen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obgen.dir/build.make tools/CMakeFiles/obgen.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Building CXX object tools/CMakeFiles/obfitall.dir/obfitall.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obfitall.dir/obfitall.cpp.o -MF CMakeFiles/obfitall.dir/obfitall.cpp.o.d -o CMakeFiles/obfitall.dir/obfitall.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obfitall.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obfitall.cpp:40: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obfitall.cpp:219:18: warning: unused variable 'best_rmsd' [-Wunused-variable] 219 | double best_rmsd = 999.999; | ^~~~~~~~~ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 77%] Building CXX object tools/CMakeFiles/obgen.dir/obgen.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obgen.dir/obgen.cpp.o -MF CMakeFiles/obgen.dir/obgen.cpp.o.d -o CMakeFiles/obgen.dir/obgen.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgen.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgen.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgen.cpp:47:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 47 | int c; | ^ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 78%] Linking CXX executable ../bin/obgen cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgen.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obgen.dir/obgen.cpp.o -o ../bin/obgen ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 78%] Built target obgen make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obminimize.dir/build.make tools/CMakeFiles/obminimize.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd 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CXX executable ../bin/obfitall cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obfitall.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obfitall.dir/obfitall.cpp.o -o ../bin/obfitall ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 78%] Built target obfitall make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obmm.dir/build.make tools/CMakeFiles/obmm.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obmm.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obmm.dir/build.make tools/CMakeFiles/obmm.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 78%] Building CXX object tools/CMakeFiles/obminimize.dir/obminimize.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obminimize.dir/obminimize.cpp.o -MF CMakeFiles/obminimize.dir/obminimize.cpp.o.d -o CMakeFiles/obminimize.dir/obminimize.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obminimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obminimize.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obminimize.cpp:41:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 41 | int c; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 78%] Building CXX object tools/CMakeFiles/obmm.dir/obmm.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obmm.dir/obmm.cpp.o -MF CMakeFiles/obmm.dir/obmm.cpp.o.d -o CMakeFiles/obmm.dir/obmm.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obmm.cpp:58: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 79%] Linking CXX executable ../bin/obminimize cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obminimize.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obminimize.dir/obminimize.cpp.o -o ../bin/obminimize ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 79%] Built target obminimize make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obprobe.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obprobe.dir/build.make tools/CMakeFiles/obprobe.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 79%] Linking CXX executable ../bin/obmm cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obmm.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obmm.dir/obmm.cpp.o -o ../bin/obmm ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 79%] Built target obmm make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obprop.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obprop.dir/build.make tools/CMakeFiles/obprop.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 79%] Building CXX object tools/CMakeFiles/obprobe.dir/obprobe.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obprobe.dir/obprobe.cpp.o -MF CMakeFiles/obprobe.dir/obprobe.cpp.o.d -o CMakeFiles/obprobe.dir/obprobe.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp:31: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp:31: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprobe.cpp:46:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 46 | int c; | ^ 4 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 80%] Building CXX object tools/CMakeFiles/obprop.dir/obprop.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obprop.dir/obprop.cpp.o -MF CMakeFiles/obprop.dir/obprop.cpp.o.d -o CMakeFiles/obprop.dir/obprop.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprop.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obprop.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/descriptor.h:27: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 80%] Linking CXX executable ../bin/obprobe cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprobe.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obprobe.dir/obprobe.cpp.o -o ../bin/obprobe ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 80%] Built target obprobe make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obrotamer.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obrotamer.dir/build.make tools/CMakeFiles/obrotamer.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 80%] Linking CXX executable ../bin/obprop cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obprop.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obprop.dir/obprop.cpp.o -o ../bin/obprop ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 80%] Built target obprop make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obrotate.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obrotate.dir/build.make tools/CMakeFiles/obrotate.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 80%] Building CXX object tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obrotamer.dir/obrotamer.cpp.o -MF CMakeFiles/obrotamer.dir/obrotamer.cpp.o.d -o CMakeFiles/obrotamer.dir/obrotamer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotamer.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotamer.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotamer.cpp:32: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/../src/rand.cpp:428:15: warning: unused function 'GenerateSequence' [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotamer.cpp:31: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/../src/rand.h:70:18: warning: private field 'i' is not used [-Wunused-private-field] 70 | unsigned int i; | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 80%] Building CXX object tools/CMakeFiles/obrotate.dir/obrotate.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obrotate.dir/obrotate.cpp.o -MF CMakeFiles/obrotate.dir/obrotate.cpp.o.d -o CMakeFiles/obrotate.dir/obrotate.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotate.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrotate.cpp:43: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 81%] Linking CXX executable ../bin/obrotamer cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotamer.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obrotamer.dir/obrotamer.cpp.o -o ../bin/obrotamer ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 81%] Built target obrotamer make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obsym.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obsym.dir/build.make tools/CMakeFiles/obsym.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 81%] Linking CXX executable ../bin/obrotate cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrotate.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obrotate.dir/obrotate.cpp.o -o ../bin/obrotate ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Built target obrotate make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obtautomer.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obtautomer.dir/build.make tools/CMakeFiles/obtautomer.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Building CXX object tools/CMakeFiles/obsym.dir/obsym.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obsym.dir/obsym.cpp.o -MF CMakeFiles/obsym.dir/obsym.cpp.o.d -o CMakeFiles/obsym.dir/obsym.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obsym.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obsym.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obsym.cpp:41:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 41 | int c; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Linking CXX executable ../bin/obsym cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obsym.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obsym.dir/obsym.cpp.o -o ../bin/obsym ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Building CXX object tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obtautomer.dir/obtautomer.cpp.o -MF CMakeFiles/obtautomer.dir/obtautomer.cpp.o.d -o CMakeFiles/obtautomer.dir/obtautomer.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obtautomer.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Built target obsym make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/depend In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obtautomer.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obtautomer.cpp:47:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 47 | int c; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obthermo.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obthermo.dir/build.make tools/CMakeFiles/obthermo.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Linking CXX executable ../bin/obtautomer cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obtautomer.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obtautomer.dir/obtautomer.cpp.o -o ../bin/obtautomer ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Built target obtautomer make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obdistgen.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obdistgen.dir/build.make tools/CMakeFiles/obdistgen.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Building CXX object tools/CMakeFiles/obthermo.dir/obthermo.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obthermo.dir/obthermo.cpp.o -MF CMakeFiles/obthermo.dir/obthermo.cpp.o.d -o CMakeFiles/obthermo.dir/obthermo.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obthermo.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obthermo.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obthermo.cpp:159:18: warning: unused variable 'Rgas' [-Wunused-variable] 159 | double Rgas = 1.9872041; // cal/mol K | ^~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obthermo.cpp:42:10: warning: variable 'bKJ' set but not used [-Wunused-but-set-variable] 42 | bool bKJ = false; | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Linking CXX executable ../bin/obthermo cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obthermo.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obthermo.dir/obthermo.cpp.o -o ../bin/obthermo ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Built target obthermo make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obgrep.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obgrep.dir/build.make tools/CMakeFiles/obgrep.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 82%] Building CXX object tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obdistgen.dir/obdistgen.cpp.o -MF CMakeFiles/obdistgen.dir/obdistgen.cpp.o.d -o CMakeFiles/obdistgen.dir/obdistgen.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obdistgen.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obdistgen.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obdistgen.cpp:44:7: warning: variable 'c' set but not used [-Wunused-but-set-variable] 44 | int c; | ^ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Linking CXX executable ../bin/obdistgen cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obdistgen.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obdistgen.dir/obdistgen.cpp.o -o ../bin/obdistgen ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Built target obdistgen make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obspectrophore.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obspectrophore.dir/build.make tools/CMakeFiles/obspectrophore.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Building CXX object tools/CMakeFiles/obgrep.dir/obgrep.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obgrep.dir/obgrep.cpp.o -MF CMakeFiles/obgrep.dir/obgrep.cpp.o.d -o CMakeFiles/obgrep.dir/obgrep.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgrep.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obgrep.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Linking CXX executable ../bin/obgrep cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgrep.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obgrep.dir/obgrep.cpp.o -o ../bin/obgrep ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Built target obgrep make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools/CMakeFiles/obrms.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f tools/CMakeFiles/obrms.dir/build.make tools/CMakeFiles/obrms.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Building CXX object tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -MF CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o.d -o CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obspectrophore.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obspectrophore.cpp:10: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Building CXX object tools/CMakeFiles/obrms.dir/obrms.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT tools/CMakeFiles/obrms.dir/obrms.cpp.o -MF CMakeFiles/obrms.dir/obrms.cpp.o.d -o CMakeFiles/obrms.dir/obrms.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrms.cpp:33: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrms.cpp:111:9: warning: suggest braces around initialization of subobject [-Wmissing-braces] 111 | { 0 }; | ^ | {} /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/tools/obrms.cpp:219:7: warning: unused variable 'help' [-Wunused-variable] 219 | bool help = false; | ^~~~ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Linking CXX executable ../bin/obspectrophore cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obspectrophore.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obspectrophore.dir/obspectrophore.cpp.o -o ../bin/obspectrophore ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Built target obspectrophore make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/GUI /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/GUI/CMakeFiles/obgui.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/GUI/CMakeFiles/obgui.dir/build.make src/GUI/CMakeFiles/obgui.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 83%] Linking CXX executable ../bin/obrms cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/obrms.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obrms.dir/obrms.cpp.o -o ../bin/obrms ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 84%] Built target obrms make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test/CMakeFiles/test_runner.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f test/CMakeFiles/test_runner.dir/build.make test/CMakeFiles/test_runner.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/test_runner.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/test_runner.cpp.o -MF CMakeFiles/test_runner.dir/test_runner.cpp.o.d -o CMakeFiles/test_runner.dir/test_runner.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test/test_runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 84%] Building CXX object test/CMakeFiles/test_runner.dir/aligntest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/aligntest.cpp.o -MF CMakeFiles/test_runner.dir/aligntest.cpp.o.d -o CMakeFiles/test_runner.dir/aligntest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aligntest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aligntest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/aliastest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/aliastest.cpp.o -MF CMakeFiles/test_runner.dir/aliastest.cpp.o.d -o CMakeFiles/test_runner.dir/aliastest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aliastest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aliastest.cpp:14: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aliastest.cpp:52:18: warning: unused variable 'ad' [-Wunused-variable] 52 | AliasData* ad = nullptr; | ^~ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/automorphismtest.cpp.o -MF CMakeFiles/test_runner.dir/automorphismtest.cpp.o.d -o CMakeFiles/test_runner.dir/automorphismtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/automorphismtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/automorphismtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 84%] Building CXX object src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/GUI && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/. -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/OBGUI.cpp.o -MF CMakeFiles/obgui.dir/OBGUI.cpp.o.d -o CMakeFiles/obgui.dir/OBGUI.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp:23: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp:129:21: warning: unused variable 'splash' [-Wunused-variable] 129 | wxSplashScreen* splash = new wxSplashScreen(bitmap, | ^~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/OBGUI.cpp:1005:11: warning: variable 'n' set but not used [-Wunused-but-set-variable] 1005 | int n; | ^ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/buildertest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/buildertest.cpp.o -MF CMakeFiles/test_runner.dir/buildertest.cpp.o.d -o CMakeFiles/test_runner.dir/buildertest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/buildertest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/buildertest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/buildertest.cpp:15:21: warning: unused variable 'failed' [-Wunused-variable] 15 | static unsigned int failed = 0; | ^~~~~~ 2 warnings generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -MF CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o.d -o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonconsistenttest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonconsistenttest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 85%] Building CXX object src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/GUI && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/. -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/stdwx.cpp.o -MF CMakeFiles/obgui.dir/stdwx.cpp.o.d -o CMakeFiles/obgui.dir/stdwx.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/stdwx.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 85%] Building CXX object test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o -MF CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o.d -o CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonfragmenttest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonfragmenttest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/canonstabletest.cpp.o -MF CMakeFiles/test_runner.dir/canonstabletest.cpp.o.d -o CMakeFiles/test_runner.dir/canonstabletest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonstabletest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/canonstabletest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -MF CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o.d -o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/carspacegrouptest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/carspacegrouptest.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 85%] Building CXX object src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/GUI && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/. -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT src/GUI/CMakeFiles/obgui.dir/optswx.cpp.o -MF CMakeFiles/obgui.dir/optswx.cpp.o.d -o CMakeFiles/obgui.dir/optswx.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/./optswx.h:22: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:223:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses] 223 | if(pdef=strcasestr(pCaption,"default")) | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:223:16: note: place parentheses around the assignment to silence this warning 223 | if(pdef=strcasestr(pCaption,"default")) | ^ | ( ) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:223:16: note: use '==' to turn this assignment into an equality comparison 223 | if(pdef=strcasestr(pCaption,"default")) | ^ | == /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/GUI/optswx.cpp:226:17: warning: unused variable 'tok' [-Wunused-variable] 226 | char* tok=strtok(pdef," :-\t' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/cistranstest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cistranstest.cpp.o -MF CMakeFiles/test_runner.dir/cistranstest.cpp.o.d -o CMakeFiles/test_runner.dir/cistranstest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cistranstest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cistranstest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 86%] Linking CXX executable ../../bin/obgui cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/GUI && /usr/bin/cmake -E cmake_link_script CMakeFiles/obgui.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/obgui.dir/OBGUI.cpp.o CMakeFiles/obgui.dir/stdwx.cpp.o CMakeFiles/obgui.dir/optswx.cpp.o -o ../../bin/obgui ../../lib64/libopenbabel.so.7.0.0 -pthread -lwx_baseu-3.2 -lwx_gtk3u_core-3.2 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 86%] Built target obgui make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test/CMakeFiles/test_inchiwrite.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f test/CMakeFiles/test_inchiwrite.dir/build.make test/CMakeFiles/test_inchiwrite.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 86%] Building CXX object test/CMakeFiles/test_runner.dir/conversiontest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/conversiontest.cpp.o -MF CMakeFiles/test_runner.dir/conversiontest.cpp.o.d -o CMakeFiles/test_runner.dir/conversiontest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/conversiontest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/conversiontest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 87%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -MF CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o.d -o CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/inchiwrite.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/inchiwrite.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Building CXX object test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -MF CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o.d -o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats/getinchi.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Linking CXX executable ../bin/test_inchiwrite cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_inchiwrite.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/test_inchiwrite.dir/inchiwrite.cpp.o CMakeFiles/test_inchiwrite.dir/__/src/formats/getinchi.cpp.o -o ../bin/test_inchiwrite ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Built target test_inchiwrite make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test/CMakeFiles/roundtrip.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f test/CMakeFiles/roundtrip.dir/build.make test/CMakeFiles/roundtrip.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/graphsymtest.cpp.o -MF CMakeFiles/test_runner.dir/graphsymtest.cpp.o.d -o CMakeFiles/test_runner.dir/graphsymtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/graphsymtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/graphsymtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Building CXX object test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/roundtrip.dir/roundtrip.cpp.o -MF CMakeFiles/roundtrip.dir/roundtrip.cpp.o.d -o CMakeFiles/roundtrip.dir/roundtrip.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/roundtrip.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/roundtrip.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Linking CXX executable ../bin/roundtrip cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/roundtrip.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/roundtrip.dir/roundtrip.cpp.o -o ../bin/roundtrip ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Built target roundtrip make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/gziptest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/gziptest.cpp.o -MF CMakeFiles/test_runner.dir/gziptest.cpp.o.d -o CMakeFiles/test_runner.dir/gziptest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/gziptest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/gziptest.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. /usr/bin/make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 88%] Building CXX object test/CMakeFiles/test_runner.dir/addhtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/addhtest.cpp.o -MF CMakeFiles/test_runner.dir/addhtest.cpp.o.d -o CMakeFiles/test_runner.dir/addhtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/addhtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/addhtest.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/implicitHtest.cpp.o -MF CMakeFiles/test_runner.dir/implicitHtest.cpp.o.d -o CMakeFiles/test_runner.dir/implicitHtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/implicitHtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/implicitHtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 89%] Building CXX object test/CMakeFiles/test_runner.dir/lssrtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/lssrtest.cpp.o -MF CMakeFiles/test_runner.dir/lssrtest.cpp.o.d -o CMakeFiles/test_runner.dir/lssrtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/lssrtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/lssrtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/lssrtest.cpp:173:8: warning: unused variable 'fail' [-Wunused-variable] 173 | bool fail = false; | ^~~~ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -MF CMakeFiles/test_runner.dir/isomorphismtest.cpp.o.d -o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/isomorphismtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/isomorphismtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 89%] Generating /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp, /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel.py cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/swig -python -c++ -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -o /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp -DHAVE_EIGEN -DHAVE_EIGEN3 -outdir /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/openbabel-python.i make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/spectrophore.h:571: Warning 312: Nested struct not currently supported (ignored). /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/spectrophore.h:578: Warning 312: Nested struct not currently supported (ignored). make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts/CMakeFiles/bindings_python.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f scripts/CMakeFiles/bindings_python.dir/build.make scripts/CMakeFiles/bindings_python.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/multicmltest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/multicmltest.cpp.o -MF CMakeFiles/test_runner.dir/multicmltest.cpp.o.d -o CMakeFiles/test_runner.dir/multicmltest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/multicmltest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/multicmltest.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/periodictest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/periodictest.cpp.o -MF CMakeFiles/test_runner.dir/periodictest.cpp.o.d -o CMakeFiles/test_runner.dir/periodictest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/periodictest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/periodictest.cpp:20: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/regressionstest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/regressionstest.cpp.o -MF CMakeFiles/test_runner.dir/regressionstest.cpp.o.d -o CMakeFiles/test_runner.dir/regressionstest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/regressionstest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/regressionstest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 90%] Building CXX object test/CMakeFiles/test_runner.dir/rotortest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/rotortest.cpp.o -MF CMakeFiles/test_runner.dir/rotortest.cpp.o.d -o CMakeFiles/test_runner.dir/rotortest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/rotortest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/rotortest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/shuffletest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/shuffletest.cpp.o -MF CMakeFiles/test_runner.dir/shuffletest.cpp.o.d -o CMakeFiles/test_runner.dir/shuffletest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/shuffletest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/shuffletest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/smilestest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smilestest.cpp.o -MF CMakeFiles/test_runner.dir/smilestest.cpp.o.d -o CMakeFiles/test_runner.dir/smilestest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smilestest.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smilestest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -MF CMakeFiles/test_runner.dir/spectrophoretest.cpp.o.d -o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/spectrophoretest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/spectrophoretest.cpp:3: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/squareplanartest.cpp.o -MF CMakeFiles/test_runner.dir/squareplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/squareplanartest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/squareplanartest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/squareplanartest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 91%] Building CXX object test/CMakeFiles/test_runner.dir/stereotest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/stereotest.cpp.o -MF CMakeFiles/test_runner.dir/stereotest.cpp.o.d -o CMakeFiles/test_runner.dir/stereotest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereotest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereotest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereotest.cpp:102:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] 102 | switch (units.at(i).type) { | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereotest.cpp:132:13: warning: 5 enumeration values not handled in switch: 'ExtendedCisTrans', 'SquarePlanar', 'ExtendedTetrahedral'... [-Wswitch] 132 | switch (units.at(i).type) { | ^~~~~~~~~~~~~~~~ 3 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -MF CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o.d -o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:255:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 255 | // / \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:270:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 270 | // / \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:285:16: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 285 | // \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:287:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 287 | // \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:310:21: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 310 | // \ | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/stereoperceptiontest.cpp:432:10: warning: backslash and newline separated by space [-Wbackslash-newline-escape] 432 | // \ | ^ 7 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tautomertest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tautomertest.cpp.o -MF CMakeFiles/test_runner.dir/tautomertest.cpp.o.d -o CMakeFiles/test_runner.dir/tautomertest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tautomertest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tautomertest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o -MF CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o.d -o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetrahedraltest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetrahedraltest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o -MF CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetranonplanartest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetranonplanartest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 92%] Building CXX object test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/tetraplanartest.cpp.o -MF CMakeFiles/test_runner.dir/tetraplanartest.cpp.o.d -o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetraplanartest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/tetraplanartest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/uniqueidtest.cpp.o -MF CMakeFiles/test_runner.dir/uniqueidtest.cpp.o.d -o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/uniqueidtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/uniqueidtest.cpp:1: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/aromatest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/aromatest.cpp.o -MF CMakeFiles/test_runner.dir/aromatest.cpp.o.d -o CMakeFiles/test_runner.dir/aromatest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aromatest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/aromatest.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/atom.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/atom.cpp.o -MF CMakeFiles/test_runner.dir/atom.cpp.o.d -o CMakeFiles/test_runner.dir/atom.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/atom.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/atom.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/bond.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/bond.cpp.o -MF CMakeFiles/test_runner.dir/bond.cpp.o.d -o CMakeFiles/test_runner.dir/bond.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/bond.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/bond.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 93%] Building CXX object test/CMakeFiles/test_runner.dir/cansmi.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cansmi.cpp.o -MF CMakeFiles/test_runner.dir/cansmi.cpp.o.d -o CMakeFiles/test_runner.dir/cansmi.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cansmi.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cansmi.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/charge_mmff94.cpp.o -MF CMakeFiles/test_runner.dir/charge_mmff94.cpp.o.d -o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/charge_mmff94.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/charge_mmff94.cpp:13: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o -MF CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o.d -o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/charge_gasteiger.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/charge_gasteiger.cpp:13: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/conversion.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/conversion.cpp.o -MF CMakeFiles/test_runner.dir/conversion.cpp.o.d -o CMakeFiles/test_runner.dir/conversion.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/conversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/conversion.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/datatest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/datatest.cpp.o -MF CMakeFiles/test_runner.dir/datatest.cpp.o.d -o CMakeFiles/test_runner.dir/datatest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/datatest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 94%] Building CXX object test/CMakeFiles/test_runner.dir/ffgaff.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffgaff.cpp.o -MF CMakeFiles/test_runner.dir/ffgaff.cpp.o.d -o CMakeFiles/test_runner.dir/ffgaff.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffgaff.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffgaff.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffghemical.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffghemical.cpp.o -MF CMakeFiles/test_runner.dir/ffghemical.cpp.o.d -o CMakeFiles/test_runner.dir/ffghemical.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffghemical.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffghemical.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffmmff94.cpp.o -MF CMakeFiles/test_runner.dir/ffmmff94.cpp.o.d -o CMakeFiles/test_runner.dir/ffmmff94.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffmmff94.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffmmff94.cpp:28: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.h:8: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/ffuff.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ffuff.cpp.o -MF CMakeFiles/test_runner.dir/ffuff.cpp.o.d -o CMakeFiles/test_runner.dir/ffuff.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ffuff.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/formalcharge.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/formalcharge.cpp.o -MF CMakeFiles/test_runner.dir/formalcharge.cpp.o.d -o CMakeFiles/test_runner.dir/formalcharge.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/formalcharge.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/formalcharge.cpp:29: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 95%] Building CXX object test/CMakeFiles/test_runner.dir/format.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/format.cpp.o -MF CMakeFiles/test_runner.dir/format.cpp.o.d -o CMakeFiles/test_runner.dir/format.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/format.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/format.cpp:27: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/formula.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/formula.cpp.o -MF CMakeFiles/test_runner.dir/formula.cpp.o.d -o CMakeFiles/test_runner.dir/formula.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/formula.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/formula.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/internalcoord.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/internalcoord.cpp.o -MF CMakeFiles/test_runner.dir/internalcoord.cpp.o.d -o CMakeFiles/test_runner.dir/internalcoord.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/internalcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/internalcoord.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/invalidsmarts.cpp.o -MF CMakeFiles/test_runner.dir/invalidsmarts.cpp.o.d -o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/invalidsmarts.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/invalidsmiles.cpp.o -MF CMakeFiles/test_runner.dir/invalidsmiles.cpp.o.d -o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/invalidsmiles.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/invalidsmiles.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 96%] Building CXX object test/CMakeFiles/test_runner.dir/iterators.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/iterators.cpp.o -MF CMakeFiles/test_runner.dir/iterators.cpp.o.d -o CMakeFiles/test_runner.dir/iterators.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/iterators.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/iterators.cpp:32: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/logp_psa.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/logp_psa.cpp.o -MF CMakeFiles/test_runner.dir/logp_psa.cpp.o.d -o CMakeFiles/test_runner.dir/logp_psa.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/logp_psa.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/logp_psa.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/math.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/math.cpp.o -MF CMakeFiles/test_runner.dir/math.cpp.o.d -o CMakeFiles/test_runner.dir/math.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/math.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/math.cpp:30: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/../src/rand.cpp:428:15: warning: unused function 'GenerateSequence' [-Wunused-function] 428 | static void GenerateSequence( unsigned int p, unsigned int m, | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/math.cpp:29: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/../src/rand.h:70:18: warning: private field 'i' is not used [-Wunused-private-field] 70 | unsigned int i; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/mol.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/mol.cpp.o -MF CMakeFiles/test_runner.dir/mol.cpp.o.d -o CMakeFiles/test_runner.dir/mol.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/mol.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/mol.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/pdbreadfile.cpp.o -MF CMakeFiles/test_runner.dir/pdbreadfile.cpp.o.d -o CMakeFiles/test_runner.dir/pdbreadfile.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/pdbreadfile.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/pdbreadfile.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 97%] Building CXX object test/CMakeFiles/test_runner.dir/phmodel.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/phmodel.cpp.o -MF CMakeFiles/test_runner.dir/phmodel.cpp.o.d -o CMakeFiles/test_runner.dir/phmodel.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/phmodel.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/phmodel.cpp:25: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/residue.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/residue.cpp.o -MF CMakeFiles/test_runner.dir/residue.cpp.o.d -o CMakeFiles/test_runner.dir/residue.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/residue.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/residue.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/ringtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/ringtest.cpp.o -MF CMakeFiles/test_runner.dir/ringtest.cpp.o.d -o CMakeFiles/test_runner.dir/ringtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ringtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/ringtest.cpp:33: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartstest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smartstest.cpp.o -MF CMakeFiles/test_runner.dir/smartstest.cpp.o.d -o CMakeFiles/test_runner.dir/smartstest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smartstest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smartstest.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smartstest.cpp:129:16: warning: variable 'res_line' set but not used [-Wunused-but-set-variable] 129 | unsigned int res_line = 0; | ^ 2 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smartsparse.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smartsparse.cpp.o -MF CMakeFiles/test_runner.dir/smartsparse.cpp.o.d -o CMakeFiles/test_runner.dir/smartsparse.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smartsparse.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 98%] Building CXX object test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/smilesmatch.cpp.o -MF CMakeFiles/test_runner.dir/smilesmatch.cpp.o.d -o CMakeFiles/test_runner.dir/smilesmatch.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smilesmatch.cpp In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/smilesmatch.cpp:30: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/unitcell.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/unitcell.cpp.o -MF CMakeFiles/test_runner.dir/unitcell.cpp.o.d -o CMakeFiles/test_runner.dir/unitcell.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/unitcell.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/cmlreadfile.cpp.o -MF CMakeFiles/test_runner.dir/cmlreadfile.cpp.o.d -o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cmlreadfile.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/cmlreadfile.cpp:26: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 1 warning generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Building CXX object test/CMakeFiles/test_runner.dir/obtest.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/clang++ -DFORMATDIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/lib64//\" -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DTESTDATADIR=\"/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/files/\" -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIE -MD -MT test/CMakeFiles/test_runner.dir/obtest.cpp.o -MF CMakeFiles/test_runner.dir/obtest.cpp.o.d -o CMakeFiles/test_runner.dir/obtest.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/test/obtest.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 90%] Building CXX object scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbindings_python_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/python3.13 -I/usr/lib64/perl5/CORE -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT scripts/CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -MF CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o.d -o CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:202: In file included from /usr/include/python3.13/Python.h:14: In file included from /usr/include/python3.13/pyconfig.h:6: /usr/include/python3.13/pyconfig-64.h:1943:9: warning: '_LARGEFILE_SOURCE' macro redefined [-Wmacro-redefined] 1943 | #define _LARGEFILE_SOURCE 1 | ^ :11:9: note: previous definition is here 11 | #define _LARGEFILE_SOURCE | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3602: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3602: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3609: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3609: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:3616: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22485:8: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22485 | std::binary_function< char const *,char const *,bool > *result = 0 ; (void)self; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22487:18: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22487 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22487:79: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22487 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22491:8: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22491 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *) 0 ; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22491:72: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22491 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *) 0 ; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:22496:34: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 22496 | arg1 = reinterpret_cast< std::binary_function< char const *,char const *,bool > * >(argp1); delete arg1; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/openbabel-python.cpp:50801:27: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 50801 | return (void *)((std::binary_function< char const *,char const *,bool > *) ((OpenBabel::CharPtrLess *) x)); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 13 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Linking CXX executable ../bin/test_runner cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/test && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_runner.dir/link.txt --verbose=1 /usr/bin/clang++ -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -rdynamic CMakeFiles/test_runner.dir/test_runner.cpp.o CMakeFiles/test_runner.dir/aligntest.cpp.o CMakeFiles/test_runner.dir/aliastest.cpp.o CMakeFiles/test_runner.dir/automorphismtest.cpp.o CMakeFiles/test_runner.dir/buildertest.cpp.o CMakeFiles/test_runner.dir/canonconsistenttest.cpp.o CMakeFiles/test_runner.dir/canonfragmenttest.cpp.o CMakeFiles/test_runner.dir/canonstabletest.cpp.o CMakeFiles/test_runner.dir/carspacegrouptest.cpp.o CMakeFiles/test_runner.dir/cifspacegrouptest.cpp.o CMakeFiles/test_runner.dir/cistranstest.cpp.o CMakeFiles/test_runner.dir/conversiontest.cpp.o CMakeFiles/test_runner.dir/graphsymtest.cpp.o CMakeFiles/test_runner.dir/gziptest.cpp.o CMakeFiles/test_runner.dir/addhtest.cpp.o CMakeFiles/test_runner.dir/implicitHtest.cpp.o CMakeFiles/test_runner.dir/lssrtest.cpp.o CMakeFiles/test_runner.dir/isomorphismtest.cpp.o CMakeFiles/test_runner.dir/multicmltest.cpp.o CMakeFiles/test_runner.dir/periodictest.cpp.o CMakeFiles/test_runner.dir/regressionstest.cpp.o CMakeFiles/test_runner.dir/rotortest.cpp.o CMakeFiles/test_runner.dir/shuffletest.cpp.o CMakeFiles/test_runner.dir/smilestest.cpp.o CMakeFiles/test_runner.dir/spectrophoretest.cpp.o CMakeFiles/test_runner.dir/squareplanartest.cpp.o CMakeFiles/test_runner.dir/stereotest.cpp.o CMakeFiles/test_runner.dir/stereoperceptiontest.cpp.o CMakeFiles/test_runner.dir/tautomertest.cpp.o CMakeFiles/test_runner.dir/tetrahedraltest.cpp.o CMakeFiles/test_runner.dir/tetranonplanartest.cpp.o CMakeFiles/test_runner.dir/tetraplanartest.cpp.o CMakeFiles/test_runner.dir/uniqueidtest.cpp.o CMakeFiles/test_runner.dir/aromatest.cpp.o CMakeFiles/test_runner.dir/atom.cpp.o CMakeFiles/test_runner.dir/bond.cpp.o CMakeFiles/test_runner.dir/cansmi.cpp.o CMakeFiles/test_runner.dir/charge_mmff94.cpp.o CMakeFiles/test_runner.dir/charge_gasteiger.cpp.o CMakeFiles/test_runner.dir/conversion.cpp.o CMakeFiles/test_runner.dir/datatest.cpp.o CMakeFiles/test_runner.dir/ffgaff.cpp.o CMakeFiles/test_runner.dir/ffghemical.cpp.o CMakeFiles/test_runner.dir/ffmmff94.cpp.o CMakeFiles/test_runner.dir/ffuff.cpp.o CMakeFiles/test_runner.dir/formalcharge.cpp.o CMakeFiles/test_runner.dir/format.cpp.o CMakeFiles/test_runner.dir/formula.cpp.o CMakeFiles/test_runner.dir/internalcoord.cpp.o CMakeFiles/test_runner.dir/invalidsmarts.cpp.o CMakeFiles/test_runner.dir/invalidsmiles.cpp.o CMakeFiles/test_runner.dir/iterators.cpp.o CMakeFiles/test_runner.dir/logp_psa.cpp.o CMakeFiles/test_runner.dir/math.cpp.o CMakeFiles/test_runner.dir/mol.cpp.o CMakeFiles/test_runner.dir/pdbreadfile.cpp.o CMakeFiles/test_runner.dir/phmodel.cpp.o CMakeFiles/test_runner.dir/residue.cpp.o CMakeFiles/test_runner.dir/ringtest.cpp.o CMakeFiles/test_runner.dir/smartstest.cpp.o CMakeFiles/test_runner.dir/smartsparse.cpp.o CMakeFiles/test_runner.dir/smilesmatch.cpp.o CMakeFiles/test_runner.dir/unitcell.cpp.o CMakeFiles/test_runner.dir/cmlreadfile.cpp.o CMakeFiles/test_runner.dir/obtest.cpp.o -o ../bin/test_runner ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Built target test_runner make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Generating /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/swig -perl5 -c++ -small -O -templatereduce -naturalvar -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -o /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp -outdir /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/openbabel-perl.i /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts/CMakeFiles/bindings_perl.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f scripts/CMakeFiles/bindings_perl.dir/build.make scripts/CMakeFiles/bindings_perl.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Linking CXX shared module /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/python/openbabel/_openbabel.so cd 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"CMakeFiles/bindings_python.dir/python/openbabel/openbabel-python.cpp.o" -lpython3.13 ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Built target bindings_python make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f scripts/CMakeFiles/bindings_ruby.dir/build.make scripts/CMakeFiles/bindings_ruby.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Generating /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/swig -ruby -c++ -small -O -templatereduce -naturalvar -autorename -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -o /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.txt /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/openbabel-ruby.i cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && sed -e 's/rb_define_module("Openbabel")/rb_define_module("OpenBabel")/' -e's/void Init_OpenBabel/void Init_openbabel/' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/cmake -E remove /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.txt make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:368: Warning 325: Nested struct not currently supported (StreamState ignored) /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/isomorphism.h:160: Warning 325: Nested class not currently supported (Functor ignored) make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts/CMakeFiles/bindings_ruby.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f scripts/CMakeFiles/bindings_ruby.dir/build.make scripts/CMakeFiles/bindings_ruby.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Building CXX object scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbindings_perl_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/python3.13 -I/usr/lib64/perl5/CORE -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT scripts/CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -MF CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o.d -o CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:1789: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:1789: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:1799: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:1986:58: warning: implicit conversion from 'unsigned long' to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion] 1986 | if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, 0, ULONG_MAX)) { | ~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~~ /usr/bin/../lib/clang/19/include/limits.h:65:37: note: expanded from macro 'ULONG_MAX' 65 | #define ULONG_MAX (__LONG_MAX__ *2UL+1UL) | ~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:2050:65: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion] 2050 | if (SWIG_IsOK(res) && SWIG_CanCastAsInteger(&d, LONG_MIN, LONG_MAX)) { | ~~~~~~~~~~~~~~~~~~~~~ ^~~~~~~~ /usr/bin/../lib/clang/19/include/limits.h:51:19: note: expanded from macro 'LONG_MAX' 51 | #define LONG_MAX __LONG_MAX__ | ^~~~~~~~~~~~ :97:22: note: expanded from macro '__LONG_MAX__' 97 | #define __LONG_MAX__ 9223372036854775807L | ^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11190:45: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11190 | XS(_wrap_new_Dummy) { { int argvi = 0; std::binary_function< char const *,char const *,bool > *result = 0 ; dXSARGS; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11192:20: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11192 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11192:81: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11192 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11196:10: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11196 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *) 0 ; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11196:74: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11196 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *) 0 ; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:11202:36: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 11202 | arg1 = reinterpret_cast< std::binary_function< char const *,char const *,bool > * >(argp1); delete arg1; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/perl/openbabel-perl.cpp:41459:27: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41459 | return (void *)((std::binary_function< char const *,char const *,bool > *) ((OpenBabel::CharPtrLess *) x)); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 12 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Building CXX object scripts/CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/clang++ -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_RADPIJSON -DHAVE_SHARED_POINTER -DHAVE_WXWIDGETS -DUSING_DYNAMIC_LIBS -DWXUSINGDLL -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE="" -D__WXGTK__ -Dbindings_ruby_EXPORTS -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/include -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/data -I/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include -I/usr/include/eigen3 -I/usr/include/python3.13 -I/usr/lib64/perl5/CORE -isystem /usr/lib64/wx/include/gtk3-unicode-3.2 -isystem /usr/include/wx-3.2 -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -std=gnu++11 -fPIC -MD -MT scripts/CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o -MF CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o.d -o CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o -c /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2211: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:74:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 74 | double GetValue(int i, int j, int k) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 3) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2211: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/griddata.h:76:12: warning: 'OpenBabel::OBGridData::GetValue' hides overloaded virtual function [-Woverloaded-virtual] 76 | double GetValue (vector3 pos) const; | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:228:32: note: hidden overloaded virtual function 'OpenBabel::OBGenericData::GetValue' declared here: different number of parameters (0 vs 1) 228 | virtual const std::string &GetValue() const | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2218: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:99:15: warning: 'OpenBabel::OBReaction::GetTitle' hides overloaded virtual function [-Woverloaded-virtual] 99 | std::string GetTitle() const { return _title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:286:28: note: hidden overloaded virtual function 'OpenBabel::OBBase::GetTitle' declared here: different number of parameters (1 vs 0) 286 | virtual const char *GetTitle(bool UNUSED(replaceNewlines) = true) const { return "";} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2218: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/reaction.h:101:8: warning: 'OpenBabel::OBReaction::SetTitle' hides overloaded virtual function [-Woverloaded-virtual] 101 | void SetTitle(const std::string& title) { _title=title; } | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/base.h:287:21: note: hidden overloaded virtual function 'OpenBabel::OBBase::SetTitle' declared here: type mismatch at 1st parameter ('const char *' vs 'const std::string &' (aka 'const basic_string &')) 287 | virtual void SetTitle(const char *) {} | ^ In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:2223: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/obconversion.h:37: In file included from /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/format.h:22: /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/include/openbabel/plugin.h:41:42: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct OBERROR CharPtrLess : public std::binary_function | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21585:8: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21585 | std::binary_function< char const *,char const *,bool > *result = 0 ; if ((argc < 0) || (argc > 0)) { | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21587:18: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21587 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21587:79: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21587 | result = (std::binary_function< char const *,char const *,bool > *)new std::binary_function< char const *,char const *,bool >(); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21591:10: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21591 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *)self; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:21591:74: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 21591 | std::binary_function< char const *,char const *,bool > *arg1 = (std::binary_function< char const *,char const *,bool > *)self; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/scripts/ruby/openbabel-ruby.cpp:53287:27: warning: 'binary_function' is deprecated [-Wdeprecated-declarations] 53287 | return (void *)((std::binary_function< char const *,char const *,bool > *) ((OpenBabel::CharPtrLess *) x)); | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/bits/stl_function.h:141:7: note: 'binary_function' has been explicitly marked deprecated here 141 | } _GLIBCXX11_DEPRECATED; | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1954:32: note: expanded from macro '_GLIBCXX11_DEPRECATED' 1954 | # define _GLIBCXX11_DEPRECATED _GLIBCXX_DEPRECATED | ^ /usr/bin/../lib/gcc/x86_64-redhat-linux/14/../../../../include/c++/14/x86_64-redhat-linux/bits/c++config.h:1945:46: note: expanded from macro '_GLIBCXX_DEPRECATED' 1945 | # define _GLIBCXX_DEPRECATED __attribute__ ((__deprecated__)) | ^ 11 warnings generated. make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 99%] Linking CXX shared module ../lib64/OpenBabel.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_perl.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/OpenBabel.so "CMakeFiles/bindings_perl.dir/perl/openbabel-perl.cpp.o" -lperl ../lib64/libopenbabel.so.7.0.0 -lpthread -lresolv -ldl -lm -lcrypt -lutil -lc -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [100%] Built target bindings_perl make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [100%] Linking CXX shared module ../lib64/openbabel.so cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/scripts && /usr/bin/cmake -E cmake_link_script CMakeFiles/bindings_ruby.dir/link.txt --verbose=1 /usr/bin/clang++ -fPIC -O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -pthread -DNDEBUG -Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 -shared -o ../lib64/openbabel.so "CMakeFiles/bindings_ruby.dir/ruby/openbabel-ruby.cpp.o" -lruby ../lib64/libopenbabel.so.7.0.0 -lm -ldl -lz make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [100%] Built target bindings_ruby make[1]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/CMakeFiles 0 make: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.OOMdSX + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + '[' /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build + mkdir /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT + CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=clang + export CC + CXX=clang++ + export CXX + cd openbabel-openbabel-3-1-1 + /usr/bin/make install DESTDIR=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT 'INSTALL=/usr/bin/install -p' -C x86_64-redhat-linux-gnu make: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/cmake -S/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 -B/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/CMakeFiles /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/openbabel.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/CMakeFiles/openbabel.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 14%] Built target openbabel /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_descriptors.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_descriptors.dir/build.make src/CMakeFiles/plugin_descriptors.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/CMakeFiles/plugin_descriptors.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 15%] Built target plugin_descriptors /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_fingerprints.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_fingerprints.dir/build.make src/CMakeFiles/plugin_fingerprints.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/CMakeFiles/plugin_fingerprints.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 16%] Built target plugin_fingerprints /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_forcefields.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_forcefields.dir/build.make src/CMakeFiles/plugin_forcefields.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/CMakeFiles/plugin_forcefields.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 17%] Built target plugin_forcefields /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_ops.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_ops.dir/build.make src/CMakeFiles/plugin_ops.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/CMakeFiles/plugin_ops.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 23%] Built target plugin_ops /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/CMakeFiles/plugin_charges.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/CMakeFiles/plugin_charges.dir/build.make src/CMakeFiles/plugin_charges.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/CMakeFiles/plugin_charges.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Built target plugin_charges /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/smilesformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/smilesformat.dir/build.make src/formats/CMakeFiles/smilesformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/smilesformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Built target smilesformat /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mdlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mdlformat.dir/build.make src/formats/CMakeFiles/mdlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/mdlformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Built target mdlformat /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mol2format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mol2format.dir/build.make src/formats/CMakeFiles/mol2format.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/mol2format.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 25%] Built target mol2format /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pdbformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pdbformat.dir/build.make src/formats/CMakeFiles/pdbformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/pdbformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 26%] Built target pdbformat /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/inchiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/inchiformat.dir/build.make src/formats/CMakeFiles/inchiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/inchiformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 27%] Built target inchiformat /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/asciiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/asciiformat.dir/build.make src/formats/CMakeFiles/asciiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/asciiformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 28%] Built target asciiformat /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/copyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/copyformat.dir/build.make src/formats/CMakeFiles/copyformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/copyformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Built target copyformat /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/MNAformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/MNAformat.dir/build.make src/formats/CMakeFiles/MNAformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/MNAformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Built target MNAformat /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/molreport.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/molreport.dir/build.make src/formats/CMakeFiles/molreport.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/molreport.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 29%] Built target molreport /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/nulformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/nulformat.dir/build.make src/formats/CMakeFiles/nulformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/nulformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 30%] Built target nulformat /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/painterformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/painterformat.dir/build.make src/formats/CMakeFiles/painterformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/painterformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 31%] Built target painterformat /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/povrayformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/povrayformat.dir/build.make src/formats/CMakeFiles/povrayformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/povrayformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Built target povrayformat /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/reportformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/reportformat.dir/build.make src/formats/CMakeFiles/reportformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/reportformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Built target reportformat /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/svgformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/svgformat.dir/build.make src/formats/CMakeFiles/svgformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/svgformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 32%] Built target svgformat /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/textformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/textformat.dir/build.make src/formats/CMakeFiles/textformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/textformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 33%] Built target textformat /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/titleformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/titleformat.dir/build.make src/formats/CMakeFiles/titleformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/titleformat.dir/build'. make[2]: Leaving directory 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/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pngformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pngformat.dir/build.make src/formats/CMakeFiles/pngformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/pngformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target pngformat /usr/bin/make -f src/formats/CMakeFiles/acesformat.dir/build.make src/formats/CMakeFiles/acesformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu 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'/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/abinitformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/abinitformat.dir/build.make src/formats/CMakeFiles/abinitformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/abinitformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target abinitformat /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/adfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/adfformat.dir/build.make src/formats/CMakeFiles/adfformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/adfformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target adfformat /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/aoforceformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/aoforceformat.dir/build.make src/formats/CMakeFiles/aoforceformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/aoforceformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 35%] Built target aoforceformat /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/castepformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/castepformat.dir/build.make src/formats/CMakeFiles/castepformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/castepformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 36%] Built target castepformat /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/crystal09format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/crystal09format.dir/build.make src/formats/CMakeFiles/crystal09format.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/crystal09format.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 37%] Built target crystal09format /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/daltonformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/daltonformat.dir/build.make src/formats/CMakeFiles/daltonformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/daltonformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 37%] Built target daltonformat /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/dmolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/dmolformat.dir/build.make src/formats/CMakeFiles/dmolformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/dmolformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 37%] Built target dmolformat /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fchkformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fchkformat.dir/build.make src/formats/CMakeFiles/fchkformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/fchkformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Built target fchkformat /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fhiaimsformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fhiaimsformat.dir/build.make src/formats/CMakeFiles/fhiaimsformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/fhiaimsformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 38%] Built target fhiaimsformat /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gamessformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gamessformat.dir/build.make src/formats/CMakeFiles/gamessformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/gamessformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 39%] Built target gamessformat /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gaussformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gaussformat.dir/build.make src/formats/CMakeFiles/gaussformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/gaussformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Built target gaussformat /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gausscubeformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gausscubeformat.dir/build.make src/formats/CMakeFiles/gausscubeformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/gausscubeformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Built target gausscubeformat /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gausszmatformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gausszmatformat.dir/build.make src/formats/CMakeFiles/gausszmatformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/gausszmatformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 40%] Built target gausszmatformat /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gulpformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gulpformat.dir/build.make src/formats/CMakeFiles/gulpformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/gulpformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Built target gulpformat /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/hinformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/hinformat.dir/build.make src/formats/CMakeFiles/hinformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/hinformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Built target hinformat /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/jaguarformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/jaguarformat.dir/build.make src/formats/CMakeFiles/jaguarformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/jaguarformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Built target jaguarformat /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/molproformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/molproformat.dir/build.make src/formats/CMakeFiles/molproformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/molproformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 41%] Built target molproformat /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mopacformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mopacformat.dir/build.make src/formats/CMakeFiles/mopacformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/mopacformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Built target mopacformat /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/nwchemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/nwchemformat.dir/build.make src/formats/CMakeFiles/nwchemformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/nwchemformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 42%] Built target nwchemformat /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pwscfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pwscfformat.dir/build.make src/formats/CMakeFiles/pwscfformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/pwscfformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 43%] Built target pwscfformat /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/qchemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/qchemformat.dir/build.make src/formats/CMakeFiles/qchemformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/qchemformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 43%] Built target qchemformat /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/siestaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/siestaformat.dir/build.make src/formats/CMakeFiles/siestaformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/siestaformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Built target siestaformat /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/turbomoleformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/turbomoleformat.dir/build.make src/formats/CMakeFiles/turbomoleformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/turbomoleformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Built target turbomoleformat /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/vaspformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/vaspformat.dir/build.make src/formats/CMakeFiles/vaspformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/vaspformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Built target vaspformat /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/xsfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xsfformat.dir/build.make src/formats/CMakeFiles/xsfformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/xsfformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 44%] Built target xsfformat /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/zindoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/zindoformat.dir/build.make src/formats/CMakeFiles/zindoformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/zindoformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target zindoformat /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gamessukformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gamessukformat.dir/build.make src/formats/CMakeFiles/gamessukformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/gamessukformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target gamessukformat /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/orcaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/orcaformat.dir/build.make src/formats/CMakeFiles/orcaformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/orcaformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target orcaformat /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/APIInterface.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/APIInterface.dir/build.make src/formats/CMakeFiles/APIInterface.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/APIInterface.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target APIInterface /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/CSRformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/CSRformat.dir/build.make src/formats/CMakeFiles/CSRformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/CSRformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 45%] Built target CSRformat /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/PQSformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/PQSformat.dir/build.make src/formats/CMakeFiles/PQSformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/PQSformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 46%] Built target PQSformat /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/MCDLformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/MCDLformat.dir/build.make src/formats/CMakeFiles/MCDLformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/MCDLformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 47%] Built target MCDLformat /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/alchemyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/alchemyformat.dir/build.make src/formats/CMakeFiles/alchemyformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/alchemyformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 48%] Built target alchemyformat /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/acrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/acrformat.dir/build.make src/formats/CMakeFiles/acrformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/acrformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Built target acrformat /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/amberformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/amberformat.dir/build.make src/formats/CMakeFiles/amberformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/amberformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Built target amberformat /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/balstformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/balstformat.dir/build.make src/formats/CMakeFiles/balstformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/balstformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 49%] Built target balstformat /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/bgfformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/bgfformat.dir/build.make src/formats/CMakeFiles/bgfformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/bgfformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Built target bgfformat /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/boxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/boxformat.dir/build.make src/formats/CMakeFiles/boxformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/boxformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Built target boxformat /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cacaoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cacaoformat.dir/build.make src/formats/CMakeFiles/cacaoformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/cacaoformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 50%] Built target cacaoformat /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cacheformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cacheformat.dir/build.make src/formats/CMakeFiles/cacheformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/cacheformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cacheformat /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/carformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/carformat.dir/build.make src/formats/CMakeFiles/carformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/carformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target carformat /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cccformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cccformat.dir/build.make src/formats/CMakeFiles/cccformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/cccformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cccformat /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chem3dformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chem3dformat.dir/build.make src/formats/CMakeFiles/chem3dformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/chem3dformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target chem3dformat /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemdrawct.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemdrawct.dir/build.make src/formats/CMakeFiles/chemdrawct.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/chemdrawct.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target chemdrawct /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemtoolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemtoolformat.dir/build.make src/formats/CMakeFiles/chemtoolformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/chemtoolformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target chemtoolformat /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cifformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cifformat.dir/build.make src/formats/CMakeFiles/cifformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/cifformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cifformat /usr/bin/make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cofformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cofformat.dir/build.make src/formats/CMakeFiles/cofformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/cofformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cofformat /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/crkformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/crkformat.dir/build.make src/formats/CMakeFiles/crkformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/crkformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target crkformat /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cssrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cssrformat.dir/build.make src/formats/CMakeFiles/cssrformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/cssrformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 51%] Built target cssrformat /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/dlpolyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/dlpolyformat.dir/build.make src/formats/CMakeFiles/dlpolyformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/dlpolyformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 52%] Built target dlpolyformat /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/exyzformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/exyzformat.dir/build.make src/formats/CMakeFiles/exyzformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/exyzformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Built target exyzformat /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fastsearchformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fastsearchformat.dir/build.make src/formats/CMakeFiles/fastsearchformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/fastsearchformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Built target fastsearchformat /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fastaformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fastaformat.dir/build.make src/formats/CMakeFiles/fastaformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/fastaformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Built target fastaformat /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/featformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/featformat.dir/build.make src/formats/CMakeFiles/featformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/featformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 53%] Built target featformat /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fhformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fhformat.dir/build.make src/formats/CMakeFiles/fhformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/fhformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 54%] Built target fhformat /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/fingerprintformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/fingerprintformat.dir/build.make src/formats/CMakeFiles/fingerprintformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/fingerprintformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 54%] Built target fingerprintformat /usr/bin/make -f src/formats/CMakeFiles/fpsformat.dir/build.make src/formats/CMakeFiles/fpsformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats 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src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/freefracformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/freefracformat.dir/build.make src/formats/CMakeFiles/freefracformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/freefracformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 55%] Built target freefracformat /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/ghemicalformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/ghemicalformat.dir/build.make src/formats/CMakeFiles/ghemicalformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/ghemicalformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Built target ghemicalformat /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/gromos96format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/gromos96format.dir/build.make src/formats/CMakeFiles/gromos96format.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/gromos96format.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Built target gromos96format /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/groformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/groformat.dir/build.make src/formats/CMakeFiles/groformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/groformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 56%] Built target groformat /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/lmpdatformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/lmpdatformat.dir/build.make src/formats/CMakeFiles/lmpdatformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/lmpdatformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Built target lmpdatformat /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/lpmdformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/lpmdformat.dir/build.make src/formats/CMakeFiles/lpmdformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/lpmdformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 57%] Built target lpmdformat /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mdffformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mdffformat.dir/build.make src/formats/CMakeFiles/mdffformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/mdffformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 58%] Built target mdffformat /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mmcifformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mmcifformat.dir/build.make src/formats/CMakeFiles/mmcifformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/mmcifformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 58%] Built target mmcifformat /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mmodformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mmodformat.dir/build.make src/formats/CMakeFiles/mmodformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/mmodformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 59%] Built target mmodformat /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/moldenformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/moldenformat.dir/build.make src/formats/CMakeFiles/moldenformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/moldenformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 60%] Built target moldenformat /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mpdformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mpdformat.dir/build.make src/formats/CMakeFiles/mpdformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/mpdformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 60%] Built target mpdformat /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/mpqcformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/mpqcformat.dir/build.make src/formats/CMakeFiles/mpqcformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/mpqcformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Built target mpqcformat /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/msiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/msiformat.dir/build.make src/formats/CMakeFiles/msiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/msiformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Built target msiformat /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/msmsformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/msmsformat.dir/build.make src/formats/CMakeFiles/msmsformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/msmsformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 61%] Built target msmsformat /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/opendxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/opendxformat.dir/build.make src/formats/CMakeFiles/opendxformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/opendxformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target opendxformat /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/outformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/outformat.dir/build.make src/formats/CMakeFiles/outformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/outformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target outformat /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pcmodelformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pcmodelformat.dir/build.make src/formats/CMakeFiles/pcmodelformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/pcmodelformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target pcmodelformat /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pdbqtformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pdbqtformat.dir/build.make src/formats/CMakeFiles/pdbqtformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/pdbqtformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target pdbqtformat /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pointcloudformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pointcloudformat.dir/build.make src/formats/CMakeFiles/pointcloudformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/pointcloudformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target pointcloudformat /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/posformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/posformat.dir/build.make src/formats/CMakeFiles/posformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/posformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target posformat /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/pqrformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/pqrformat.dir/build.make src/formats/CMakeFiles/pqrformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/pqrformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target pqrformat /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/shelxformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/shelxformat.dir/build.make src/formats/CMakeFiles/shelxformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/shelxformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 62%] Built target shelxformat /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/smileyformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/smileyformat.dir/build.make src/formats/CMakeFiles/smileyformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/smileyformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Built target smileyformat /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/stlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/stlformat.dir/build.make src/formats/CMakeFiles/stlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/stlformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Built target stlformat /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/thermoformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/thermoformat.dir/build.make src/formats/CMakeFiles/thermoformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/thermoformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Built target thermoformat /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/tinkerformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/tinkerformat.dir/build.make src/formats/CMakeFiles/tinkerformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/tinkerformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 63%] Built target tinkerformat /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/unichemformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/unichemformat.dir/build.make src/formats/CMakeFiles/unichemformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/unichemformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 64%] Built target unichemformat /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/viewmolformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/viewmolformat.dir/build.make src/formats/CMakeFiles/viewmolformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/viewmolformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 64%] Built target viewmolformat /usr/bin/make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/wlnformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/wlnformat.dir/build.make src/formats/CMakeFiles/wlnformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/wlnformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Built target wlnformat /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/xedformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xedformat.dir/build.make src/formats/CMakeFiles/xedformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/xedformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 65%] Built target xedformat /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/xyzformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/xyzformat.dir/build.make src/formats/CMakeFiles/xyzformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/xyzformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Built target xyzformat /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/yasaraformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/yasaraformat.dir/build.make src/formats/CMakeFiles/yasaraformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/yasaraformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Built target yasaraformat /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/rxnformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/rxnformat.dir/build.make src/formats/CMakeFiles/rxnformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/rxnformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 66%] Built target rxnformat /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemdrawcdx.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemdrawcdx.dir/build.make src/formats/CMakeFiles/chemdrawcdx.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/chemdrawcdx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 67%] Built target chemdrawcdx /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/chemkinformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/chemkinformat.dir/build.make src/formats/CMakeFiles/chemkinformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/chemkinformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 68%] Built target chemkinformat /usr/bin/make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/rinchiformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/rinchiformat.dir/build.make src/formats/CMakeFiles/rinchiformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/rinchiformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 69%] Built target rinchiformat /usr/bin/make -f src/formats/CMakeFiles/rsmiformat.dir/build.make src/formats/CMakeFiles/rsmiformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats 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src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/png2format.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/png2format.dir/build.make src/formats/CMakeFiles/png2format.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/png2format.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 70%] Built target png2format /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cdxmlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cdxmlformat.dir/build.make src/formats/CMakeFiles/cdxmlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/cdxmlformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 71%] Built target cdxmlformat /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu/src/formats/CMakeFiles/cmlformat.dir/DependInfo.cmake "--color=" make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' /usr/bin/make -f src/formats/CMakeFiles/cmlformat.dir/build.make src/formats/CMakeFiles/cmlformat.dir/build make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' make[2]: Nothing to be done for 'src/formats/CMakeFiles/cmlformat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' [ 72%] Built target cmlformat /usr/bin/make -f src/formats/CMakeFiles/pubchem.dir/build.make src/formats/CMakeFiles/pubchem.dir/depend make[2]: Entering directory '/builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu' cd 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--dir=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/applications /builddir/build/SOURCES/obgui.desktop + install -Dpm644 babel.png /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/pixmaps/babel.png + mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/etc/profile.d + cat + cat + /usr/bin/find-debuginfo -j2 --strict-build-id -m -i --build-id-seed 3.1.1-29.fc41 --unique-debug-suffix -3.1.1-29.fc41.x86_64 --unique-debug-src-base openbabel-3.1.1-29.fc41.x86_64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 110000000 -S debugsourcefiles.list /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 find-debuginfo: starting Extracting debug info from 151 files DWARF-compressing 151 files dwz: ./usr/bin/obabel-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obconformer-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obdistgen-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obenergy-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obfit-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obfitall-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obgen-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obgrep-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obgui-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obminimize-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obmm-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obprobe-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obprop-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/bin/obrms-3.1.1-29.fc41.x86_64.debug: Unknown debugging section 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./usr/lib64/openbabel3/fingerprintformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/fpsformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/freefracformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gamessformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gamessukformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gausscubeformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gaussformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gausszmatformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/ghemicalformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/groformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gromos96format.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/gulpformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/hinformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/inchiformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/jaguarformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/lmpdatformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/lpmdformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mdffformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mdlformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mmcifformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mmodformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mol2format.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/moldenformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/molproformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/molreport.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mopacformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mpdformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/mpqcformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/msiformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/msmsformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/nulformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/nwchemformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/opendxformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/orcaformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/outformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/painterformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pcmodelformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pdbformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pdbqtformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_charges.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_descriptors.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_fingerprints.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_forcefields.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/plugin_ops.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/png2format.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pngformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pointcloudformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/posformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/povrayformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pqrformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pubchem.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pubchemjsonformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/pwscfformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/qchemformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/reportformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/rinchiformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/rsmiformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/rxnformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/shelxformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/siestaformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/smilesformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/smileyformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/stlformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/svgformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/textformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/thermoformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/tinkerformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/titleformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/turbomoleformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/unichemformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/vaspformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/viewmolformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/wlnformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/xedformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/xmlformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/xsfformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/xyzformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/yasaraformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/openbabel3/zindoformat.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/perl5/vendor_perl/auto/Chemistry/OpenBabel/OpenBabel.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/python3.13/site-packages/openbabel/_openbabel.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: ./usr/lib64/ruby/vendor_ruby/openbabel.so-3.1.1-29.fc41.x86_64.debug: Unknown debugging section .debug_addr dwz: Too few files for multifile optimization sepdebugcrcfix: Updated 0 CRC32s, 151 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/openbabel-3.1.1-29.fc41.x86_64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j2 Bytecompiling .py files below /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j2 /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/openbabel/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/openbabel/__pycache__/pybel.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/openbabel/__pycache__/openbabel.cpython-313.pyc: rewriting with normalized contents Scanned 91 directories and 886 files, processed 3 inodes, 3 modified (0 replaced + 3 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/openbabel-3.1.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.a48ZzG ~/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu ~/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1 + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + CFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -flto=thin -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS --config=/usr/lib/rpm/redhat/redhat-hardened-clang.cfg -fstack-protector-strong -m64 -march=x86-64 -mtune=generic -fasynchronous-unwind-tables -fstack-clash-protection -fcf-protection -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,pack-relative-relocs -Wl,-z,now --config=/usr/lib/rpm/redhat/redhat-hardened-clang-ld.cfg -flto=thin -ffat-lto-objects -Wl,--build-id=sha1 ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=clang + export CC + CXX=clang++ + export CXX + cd openbabel-openbabel-3-1-1 + pushd x86_64-redhat-linux-gnu + rm -f lib64/openbabel.so + export CTEST_OUTPUT_ON_FAILURE=1 + CTEST_OUTPUT_ON_FAILURE=1 + export PYTHONPATH=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.13/site-packages + PYTHONPATH=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/lib64/python3.13/site-packages + ctest3 -j1 --force-new-ctest-process Test project /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/x86_64-redhat-linux-gnu Start 1: test_align_1 1/227 Test #1: test_align_1 ..................... Passed 0.01 sec Start 2: test_align_2 2/227 Test #2: test_align_2 ..................... Passed 0.01 sec Start 3: test_align_3 3/227 Test #3: test_align_3 ..................... Passed 0.01 sec Start 4: test_align_4 4/227 Test #4: test_align_4 ..................... Passed 0.08 sec Start 5: test_align_5 5/227 Test #5: test_align_5 ..................... Passed 0.08 sec Start 6: test_alias_1 6/227 Test #6: test_alias_1 ..................... Passed 0.04 sec Start 7: test_automorphism_1 7/227 Test #7: test_automorphism_1 .............. Passed 0.03 sec Start 8: test_automorphism_2 8/227 Test #8: test_automorphism_2 .............. Passed 0.03 sec Start 9: test_automorphism_3 9/227 Test #9: test_automorphism_3 .............. Passed 0.04 sec Start 10: test_automorphism_4 10/227 Test #10: test_automorphism_4 .............. Passed 0.03 sec Start 11: test_automorphism_5 11/227 Test #11: test_automorphism_5 .............. Passed 0.03 sec Start 12: test_automorphism_6 12/227 Test #12: test_automorphism_6 .............. Passed 0.04 sec Start 13: test_automorphism_7 13/227 Test #13: test_automorphism_7 .............. Passed 0.03 sec Start 14: test_automorphism_8 14/227 Test #14: test_automorphism_8 .............. Passed 0.03 sec Start 15: test_automorphism_9 15/227 Test #15: test_automorphism_9 .............. Passed 0.03 sec Start 16: test_automorphism_10 16/227 Test #16: test_automorphism_10 ............. Passed 0.03 sec Start 17: test_builder_1 17/227 Test #17: test_builder_1 ................... Passed 2.16 sec Start 18: test_builder_2 18/227 Test #18: test_builder_2 ................... Passed 0.22 sec Start 19: test_builder_3 19/227 Test #19: test_builder_3 ................... Passed 0.08 sec Start 20: test_builder_4 20/227 Test #20: test_builder_4 ................... Passed 0.09 sec Start 21: test_builder_5 21/227 Test #21: test_builder_5 ................... Passed 0.08 sec Start 22: test_builder_6 22/227 Test #22: test_builder_6 ................... Passed 0.08 sec Start 23: test_canonconsistent_1 23/227 Test #23: test_canonconsistent_1 ........... Passed 0.13 sec Start 24: test_canonconsistent_2 24/227 Test #24: test_canonconsistent_2 ........... Passed 0.04 sec Start 25: test_canonconsistent_3 25/227 Test #25: test_canonconsistent_3 ........... Passed 0.05 sec Start 26: test_canonfragment_1 26/227 Test #26: test_canonfragment_1 ............. Passed 0.03 sec Start 27: test_canonstable_1 27/227 Test #27: test_canonstable_1 ............... Passed 3.78 sec Start 28: test_carspacegroup_1 28/227 Test #28: test_carspacegroup_1 ............. Passed 0.03 sec Start 29: test_carspacegroup_2 29/227 Test #29: test_carspacegroup_2 ............. Passed 0.18 sec Start 30: test_carspacegroup_3 30/227 Test #30: test_carspacegroup_3 ............. Passed 0.18 sec Start 31: test_carspacegroup_4 31/227 Test #31: test_carspacegroup_4 ............. Passed 0.18 sec Start 32: test_cifspacegroup_1 32/227 Test #32: test_cifspacegroup_1 ............. Passed 0.18 sec Start 33: test_cifspacegroup_2 33/227 Test #33: test_cifspacegroup_2 ............. Passed 0.18 sec Start 34: test_cifspacegroup_3 34/227 Test #34: test_cifspacegroup_3 ............. Passed 0.01 sec Start 35: test_cifspacegroup_4 35/227 Test #35: test_cifspacegroup_4 ............. Passed 0.19 sec Start 36: test_cifspacegroup_5 36/227 Test #36: test_cifspacegroup_5 ............. Passed 0.18 sec Start 37: test_cifspacegroup_6 37/227 Test #37: test_cifspacegroup_6 ............. Passed 0.18 sec Start 38: test_cifspacegroup_7 38/227 Test #38: test_cifspacegroup_7 ............. Passed 0.18 sec Start 39: test_cifspacegroup_8 39/227 Test #39: test_cifspacegroup_8 ............. Passed 0.19 sec Start 40: test_cifspacegroup_9 40/227 Test #40: test_cifspacegroup_9 ............. Passed 0.18 sec Start 41: test_cifspacegroup_10 41/227 Test #41: test_cifspacegroup_10 ............ Passed 0.18 sec Start 42: test_cifspacegroup_11 42/227 Test #42: test_cifspacegroup_11 ............ Passed 0.19 sec Start 43: test_cifspacegroup_12 43/227 Test #43: test_cifspacegroup_12 ............ Passed 0.18 sec Start 44: test_cifspacegroup_13 44/227 Test #44: test_cifspacegroup_13 ............ Passed 0.06 sec Start 45: test_cistrans_1 45/227 Test #45: test_cistrans_1 .................. Passed 0.01 sec Start 46: test_cistrans_2 46/227 Test #46: test_cistrans_2 .................. Passed 0.01 sec Start 47: test_cistrans_3 47/227 Test #47: test_cistrans_3 .................. Passed 0.01 sec Start 48: test_cistrans_4 48/227 Test #48: test_cistrans_4 .................. Passed 0.01 sec Start 49: test_cistrans_5 49/227 Test #49: test_cistrans_5 .................. Passed 0.01 sec Start 50: test_cistrans_6 50/227 Test #50: test_cistrans_6 .................. Passed 0.04 sec Start 51: test_cistrans_7 51/227 Test #51: test_cistrans_7 .................. Passed 0.03 sec Start 52: test_cistrans_8 52/227 Test #52: test_cistrans_8 .................. Passed 0.03 sec Start 53: test_cistrans_9 53/227 Test #53: test_cistrans_9 .................. Passed 0.03 sec Start 54: test_conversion_1 54/227 Test #54: test_conversion_1 ................ Passed 0.03 sec Start 55: test_graphsym_1 55/227 Test #55: test_graphsym_1 .................. Passed 0.04 sec Start 56: test_graphsym_2 56/227 Test #56: test_graphsym_2 .................. Passed 0.03 sec Start 57: test_graphsym_3 57/227 Test #57: test_graphsym_3 .................. Passed 0.04 sec Start 58: test_graphsym_4 58/227 Test #58: test_graphsym_4 .................. Passed 0.04 sec Start 59: test_graphsym_5 59/227 Test #59: test_graphsym_5 .................. Passed 0.04 sec Start 60: test_gzip_1 60/227 Test #60: test_gzip_1 ...................... Passed 0.12 sec Start 61: test_addh_1 61/227 Test #61: test_addh_1 ...................... Passed 3.68 sec Start 62: test_implicitH_1 62/227 Test #62: test_implicitH_1 ................. Passed 0.04 sec Start 63: test_lssr_1 63/227 Test #63: test_lssr_1 ...................... Passed 0.07 sec Start 64: test_lssr_2 64/227 Test #64: test_lssr_2 ...................... Passed 1.26 sec Start 65: test_lssr_3 65/227 Test #65: test_lssr_3 ...................... Passed 0.41 sec Start 66: test_lssr_4 66/227 Test #66: test_lssr_4 ...................... Passed 0.45 sec Start 67: test_lssr_5 67/227 Test #67: test_lssr_5 ...................... Passed 0.04 sec Start 68: test_isomorphism_1 68/227 Test #68: test_isomorphism_1 ............... Passed 0.03 sec Start 69: test_isomorphism_2 69/227 Test #69: test_isomorphism_2 ............... Passed 0.03 sec Start 70: test_isomorphism_3 70/227 Test #70: test_isomorphism_3 ............... Passed 0.03 sec Start 71: test_isomorphism_4 71/227 Test #71: test_isomorphism_4 ............... Passed 0.03 sec Start 72: test_isomorphism_5 72/227 Test #72: test_isomorphism_5 ............... Passed 0.03 sec Start 73: test_isomorphism_6 73/227 Test #73: test_isomorphism_6 ............... Passed 0.03 sec Start 74: test_isomorphism_7 74/227 Test #74: test_isomorphism_7 ............... Passed 0.03 sec Start 75: test_isomorphism_8 75/227 Test #75: test_isomorphism_8 ............... Passed 0.04 sec Start 76: test_isomorphism_9 76/227 Test #76: test_isomorphism_9 ............... Passed 0.03 sec Start 77: test_multicml_1 77/227 Test #77: test_multicml_1 .................. Passed 0.04 sec Start 78: test_periodic_1 78/227 Test #78: test_periodic_1 .................. Passed 0.01 sec Start 79: test_periodic_2 79/227 Test #79: test_periodic_2 .................. Passed 0.01 sec Start 80: test_periodic_3 80/227 Test #80: test_periodic_3 .................. Passed 0.04 sec Start 81: test_periodic_4 81/227 Test #81: test_periodic_4 .................. Passed 0.01 sec Start 82: test_regressions_1 82/227 Test #82: test_regressions_1 ............... Passed 0.04 sec Start 83: test_regressions_221 83/227 Test #83: test_regressions_221 ............. Passed 0.04 sec Start 84: test_regressions_222 84/227 Test #84: test_regressions_222 ............. Passed 0.03 sec Start 85: test_regressions_223 85/227 Test #85: test_regressions_223 ............. Passed 0.03 sec Start 86: test_regressions_224 86/227 Test #86: test_regressions_224 ............. Passed 0.03 sec Start 87: test_regressions_225 87/227 Test #87: test_regressions_225 ............. Passed 0.03 sec Start 88: test_regressions_226 88/227 Test #88: test_regressions_226 ............. Passed 0.04 sec Start 89: test_regressions_227 89/227 Test #89: test_regressions_227 ............. Passed 0.03 sec Start 90: test_regressions_228 90/227 Test #90: test_regressions_228 ............. Passed 0.03 sec Start 91: test_regressions_240 91/227 Test #91: test_regressions_240 ............. Passed 0.03 sec Start 92: test_regressions_241 92/227 Test #92: test_regressions_241 ............. Passed 0.03 sec Start 93: test_regressions_242 93/227 Test #93: test_regressions_242 ............. Passed 0.03 sec Start 94: test_regressions_1794 94/227 Test #94: test_regressions_1794 ............ Passed 0.03 sec Start 95: test_regressions_2111 95/227 Test #95: test_regressions_2111 ............ Passed 0.03 sec Start 96: test_rotor_1 96/227 Test #96: test_rotor_1 ..................... Passed 0.01 sec Start 97: test_rotor_2 97/227 Test #97: test_rotor_2 ..................... Passed 0.03 sec Start 98: test_rotor_3 98/227 Test #98: test_rotor_3 ..................... Passed 0.03 sec Start 99: test_rotor_4 99/227 Test #99: test_rotor_4 ..................... Passed 0.04 sec Start 100: test_shuffle_1 100/227 Test #100: test_shuffle_1 ................... Passed 0.16 sec Start 101: test_shuffle_2 101/227 Test #101: test_shuffle_2 ................... Passed 0.19 sec Start 102: test_shuffle_3 102/227 Test #102: test_shuffle_3 ................... Passed 0.08 sec Start 103: test_shuffle_4 103/227 Test #103: test_shuffle_4 ................... Passed 0.05 sec Start 104: test_shuffle_5 104/227 Test #104: test_shuffle_5 ................... Passed 0.09 sec Start 105: test_smiles_1 105/227 Test #105: test_smiles_1 .................... Passed 0.03 sec Start 106: test_smiles_2 106/227 Test #106: test_smiles_2 .................... Passed 0.03 sec Start 107: test_smiles_3 107/227 Test #107: test_smiles_3 .................... Passed 0.04 sec Start 108: test_spectrophore_1 108/227 Test #108: test_spectrophore_1 .............. Passed 0.18 sec Start 109: test_spectrophore_2 109/227 Test #109: test_spectrophore_2 .............. Passed 0.01 sec Start 110: test_spectrophore_3 110/227 Test #110: test_spectrophore_3 .............. Passed 0.01 sec Start 111: test_spectrophore_4 111/227 Test #111: test_spectrophore_4 .............. Passed 0.02 sec Start 112: test_spectrophore_5 112/227 Test #112: test_spectrophore_5 .............. Passed 0.01 sec Start 113: test_squareplanar_1 113/227 Test #113: test_squareplanar_1 .............. Passed 0.01 sec Start 114: test_squareplanar_2 114/227 Test #114: test_squareplanar_2 .............. Passed 0.01 sec Start 115: test_squareplanar_3 115/227 Test #115: test_squareplanar_3 .............. Passed 0.01 sec Start 116: test_squareplanar_4 116/227 Test #116: test_squareplanar_4 .............. Passed 0.01 sec Start 117: test_squareplanar_5 117/227 Test #117: test_squareplanar_5 .............. Passed 0.01 sec Start 118: test_stereo_1 118/227 Test #118: test_stereo_1 .................... Passed 0.01 sec Start 119: test_stereo_2 119/227 Test #119: test_stereo_2 .................... Passed 0.01 sec Start 120: test_stereo_3 120/227 Test #120: test_stereo_3 .................... Passed 0.01 sec Start 121: test_stereo_4 121/227 Test #121: test_stereo_4 .................... Passed 0.01 sec Start 122: test_stereo_5 122/227 Test #122: test_stereo_5 .................... Passed 0.01 sec Start 123: test_stereo_6 123/227 Test #123: test_stereo_6 .................... Passed 0.10 sec Start 124: test_stereoperception_1 124/227 Test #124: test_stereoperception_1 .......... Passed 0.04 sec Start 125: test_stereoperception_2 125/227 Test #125: test_stereoperception_2 .......... Passed 0.04 sec Start 126: test_stereoperception_3 126/227 Test #126: test_stereoperception_3 .......... Passed 0.03 sec Start 127: test_stereoperception_4 127/227 Test #127: test_stereoperception_4 .......... Passed 0.03 sec Start 128: test_tautomer_1 128/227 Test #128: test_tautomer_1 .................. Passed 0.03 sec Start 129: test_tautomer_2 129/227 Test #129: test_tautomer_2 .................. Passed 0.04 sec Start 130: test_tautomer_3 130/227 Test #130: test_tautomer_3 .................. Passed 0.06 sec Start 131: test_tautomer_4 131/227 Test #131: test_tautomer_4 .................. Passed 0.03 sec Start 132: test_tautomer_5 132/227 Test #132: test_tautomer_5 .................. Passed 0.03 sec Start 133: test_tautomer_6 133/227 Test #133: test_tautomer_6 .................. Passed 0.03 sec Start 134: test_tautomer_7 134/227 Test #134: test_tautomer_7 .................. Passed 0.03 sec Start 135: test_tautomer_8 135/227 Test #135: test_tautomer_8 .................. Passed 0.03 sec Start 136: test_tautomer_9 136/227 Test #136: test_tautomer_9 .................. Passed 0.04 sec Start 137: test_tautomer_10 137/227 Test #137: test_tautomer_10 ................. Passed 0.03 sec Start 138: test_tautomer_11 138/227 Test #138: test_tautomer_11 ................. Passed 0.03 sec Start 139: test_tautomer_12 139/227 Test #139: test_tautomer_12 ................. Passed 0.03 sec Start 140: test_tautomer_13 140/227 Test #140: test_tautomer_13 ................. Passed 0.03 sec Start 141: test_tautomer_14 141/227 Test #141: test_tautomer_14 ................. Passed 0.03 sec Start 142: test_tautomer_15 142/227 Test #142: test_tautomer_15 ................. Passed 0.04 sec Start 143: test_tautomer_16 143/227 Test #143: test_tautomer_16 ................. Passed 0.03 sec Start 144: test_tautomer_17 144/227 Test #144: test_tautomer_17 ................. Passed 0.03 sec Start 145: test_tautomer_18 145/227 Test #145: test_tautomer_18 ................. Passed 0.03 sec Start 146: test_tautomer_19 146/227 Test #146: test_tautomer_19 ................. Passed 0.03 sec Start 147: test_tautomer_20 147/227 Test #147: test_tautomer_20 ................. Passed 0.03 sec Start 148: test_tautomer_21 148/227 Test #148: test_tautomer_21 ................. Passed 0.04 sec Start 149: test_tautomer_22 149/227 Test #149: test_tautomer_22 ................. Passed 0.04 sec Start 150: test_tautomer_23 150/227 Test #150: test_tautomer_23 ................. Passed 0.04 sec Start 151: test_tautomer_24 151/227 Test #151: test_tautomer_24 ................. Passed 0.03 sec Start 152: test_tautomer_25 152/227 Test #152: test_tautomer_25 ................. Passed 0.03 sec Start 153: test_tautomer_26 153/227 Test #153: test_tautomer_26 ................. Passed 0.04 sec Start 154: test_tautomer_27 154/227 Test #154: test_tautomer_27 ................. Passed 0.03 sec Start 155: test_tautomer_28 155/227 Test #155: test_tautomer_28 ................. Passed 0.03 sec Start 156: test_tetrahedral_1 156/227 Test #156: test_tetrahedral_1 ............... Passed 0.01 sec Start 157: test_tetrahedral_2 157/227 Test #157: test_tetrahedral_2 ............... Passed 0.01 sec Start 158: test_tetrahedral_3 158/227 Test #158: test_tetrahedral_3 ............... Passed 0.01 sec Start 159: test_tetrahedral_4 159/227 Test #159: test_tetrahedral_4 ............... Passed 0.01 sec Start 160: test_tetrahedral_5 160/227 Test #160: test_tetrahedral_5 ............... Passed 0.01 sec Start 161: test_tetranonplanar_1 161/227 Test #161: test_tetranonplanar_1 ............ Passed 0.01 sec Start 162: test_tetraplanar_1 162/227 Test #162: test_tetraplanar_1 ............... Passed 0.01 sec Start 163: test_uniqueid_1 163/227 Test #163: test_uniqueid_1 .................. Passed 0.01 sec Start 164: test_uniqueid_2 164/227 Test #164: test_uniqueid_2 .................. Passed 0.01 sec Start 165: test_aromatest_1 165/227 Test #165: test_aromatest_1 ................. Passed 0.04 sec Start 166: test_atom_1 166/227 Test #166: test_atom_1 ...................... Passed 0.01 sec Start 167: test_atom_2 167/227 Test #167: test_atom_2 ...................... Passed 0.01 sec Start 168: test_atom_3 168/227 Test #168: test_atom_3 ...................... Passed 0.01 sec Start 169: test_atom_4 169/227 Test #169: test_atom_4 ...................... Passed 0.01 sec Start 170: test_bond_1 170/227 Test #170: test_bond_1 ...................... Passed 0.01 sec Start 171: test_cansmi_1 171/227 Test #171: test_cansmi_1 .................... Passed 0.19 sec Start 172: test_charge_mmff94_1 172/227 Test #172: test_charge_mmff94_1 ............. Passed 0.10 sec Start 173: test_charge_gasteiger_1 173/227 Test #173: test_charge_gasteiger_1 .......... Passed 0.06 sec Start 174: test_datatest_1 174/227 Test #174: test_datatest_1 .................. Passed 0.01 sec Start 175: test_ffgaff_1 175/227 Test #175: test_ffgaff_1 .................... Passed 0.37 sec Start 176: test_ffghemical_1 176/227 Test #176: test_ffghemical_1 ................ Passed 0.53 sec Start 177: test_ffmmff94_1 177/227 Test #177: test_ffmmff94_1 .................. Passed 0.40 sec Start 178: test_ffmmff94_2 178/227 Test #178: test_ffmmff94_2 .................. Passed 0.08 sec Start 179: test_ffmmff94_3 179/227 Test #179: test_ffmmff94_3 .................. Passed 0.40 sec Start 180: test_ffmmff94_4 180/227 Test #180: test_ffmmff94_4 .................. Passed 0.08 sec Start 181: test_ffmmff94_5 181/227 Test #181: test_ffmmff94_5 .................. Passed 0.40 sec Start 182: test_ffmmff94_6 182/227 Test #182: test_ffmmff94_6 .................. Passed 0.01 sec Start 183: test_ffuff_1 183/227 Test #183: test_ffuff_1 ..................... Passed 0.33 sec Start 184: test_formalcharge_1 184/227 Test #184: test_formalcharge_1 .............. Passed 0.04 sec Start 185: test_format_1 185/227 Test #185: test_format_1 .................... Passed 0.03 sec Start 186: test_formula_1 186/227 Test #186: test_formula_1 ................... Passed 0.05 sec Start 187: test_internalcoord_1 187/227 Test #187: test_internalcoord_1 ............. Passed 0.01 sec Start 188: test_invalidsmarts_1 188/227 Test #188: test_invalidsmarts_1 ............. Passed 0.01 sec Start 189: test_invalidsmiles_1 189/227 Test #189: test_invalidsmiles_1 ............. Passed 0.01 sec Start 190: test_iterators_1 190/227 Test #190: test_iterators_1 ................. Passed 0.04 sec Start 191: test_logp_psa_1 191/227 Test #191: test_logp_psa_1 .................. Passed 0.03 sec Start 192: test_math_1 192/227 Test #192: test_math_1 ...................... Passed 0.02 sec Start 193: test_math_2 193/227 Test #193: test_math_2 ...................... Passed 0.01 sec Start 194: test_math_3 194/227 Test #194: test_math_3 ...................... Passed 0.01 sec Start 195: test_math_4 195/227 Test #195: test_math_4 ...................... Passed 0.01 sec Start 196: test_mol_1 196/227 Test #196: test_mol_1 ....................... Passed 0.04 sec Start 197: test_pdbreadfile_1 197/227 Test #197: test_pdbreadfile_1 ............... Passed 0.03 sec Start 198: test_pdbreadfile_2 198/227 Test #198: test_pdbreadfile_2 ............... Passed 0.04 sec Start 199: test_pdbreadfile_3 199/227 Test #199: test_pdbreadfile_3 ............... Passed 0.04 sec Start 200: test_pdbreadfile_4 200/227 Test #200: test_pdbreadfile_4 ............... Passed 0.03 sec Start 201: test_phmodel_1 201/227 Test #201: test_phmodel_1 ................... Passed 0.04 sec Start 202: test_residue_1 202/227 Test #202: test_residue_1 ................... Passed 0.03 sec Start 203: test_ringtest_1 203/227 Test #203: test_ringtest_1 .................. Passed 0.04 sec Start 204: test_smartstest_1 204/227 Test #204: test_smartstest_1 ................ Passed 0.08 sec Start 205: test_smartsparse_1 205/227 Test #205: test_smartsparse_1 ............... Passed 0.01 sec Start 206: test_smilesmatch_1 206/227 Test #206: test_smilesmatch_1 ............... Passed 0.29 sec Start 207: test_unitcell_1 207/227 Test #207: test_unitcell_1 .................. Passed 0.01 sec Start 208: test_cmlreadfile_1 208/227 Test #208: test_cmlreadfile_1 ............... Passed 0.03 sec Start 209: inchiSamples.sdf_Test 209/227 Test #209: inchiSamples.sdf_Test ............ Passed 0.08 sec Start 210: inchiSamplesTechMan.sdf_Test 210/227 Test #210: inchiSamplesTechMan.sdf_Test ..... Passed 0.06 sec Start 211: inchiSteffen_PubChem.smi_Test 211/227 Test #211: inchiSteffen_PubChem.smi_Test .... Passed 0.05 sec Start 212: pytest_babel 212/227 Test #212: pytest_babel ..................... Passed 3.53 sec Start 213: pytest_sym 213/227 Test #213: pytest_sym ....................... Passed 5.30 sec Start 214: pytest_smartssym 214/227 Test #214: pytest_smartssym ................. Passed 1.39 sec Start 215: pytest_fastsearch 215/227 Test #215: pytest_fastsearch ................ Passed 0.16 sec Start 216: pytest_distgeom 216/227 Test #216: pytest_distgeom .................. Passed 67.18 sec Start 217: pytest_unique 217/227 Test #217: pytest_unique .................... Passed 0.38 sec Start 218: pytest_kekule 218/227 Test #218: pytest_kekule .................... Passed 0.77 sec Start 219: pytest_pdbformat 219/227 Test #219: pytest_pdbformat ................. Passed 0.09 sec Start 220: pytest_RInChI 220/227 Test #220: pytest_RInChI .................... Passed 1.40 sec Start 221: pybindtest_bindings 221/227 Test #221: pybindtest_bindings .............. Passed 0.29 sec Start 222: pybindtest__pybel 222/227 Test #222: pybindtest__pybel ................ Passed 0.38 sec Start 223: pybindtest_example 223/227 Test #223: pybindtest_example ............... Passed 0.12 sec Start 224: pybindtest_obconv_writers 224/227 Test #224: pybindtest_obconv_writers ........ Passed 0.18 sec Start 225: pybindtest_cdjsonformat 225/227 Test #225: pybindtest_cdjsonformat .......... Passed 0.12 sec Start 226: pybindtest_pcjsonformat 226/227 Test #226: pybindtest_pcjsonformat .......... Passed 0.13 sec Start 227: pybindtest_roundtrip 227/227 Test #227: pybindtest_roundtrip ............. Passed 86.79 sec 100% tests passed, 0 tests failed out of 227 Total Test time (real) = 192.12 sec + RPM_EC=0 ++ jobs -p + exit 0 Processing files: openbabel-3.1.1-29.fc41.x86_64 warning: File listed twice: /usr/lib/.build-id/23/b75f9af32d532b75b56ff5c5c7f5927a863ed4 Provides: config(openbabel) = 3.1.1-29.fc41 openbabel = 3.1.1-29.fc41 openbabel(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libopenbabel.so.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: openbabel-devel-3.1.1-29.fc41.x86_64 Provides: cmake(OpenBabel3) = 3.1.1 cmake(openbabel3) = 3.1.1 openbabel-devel = 3.1.1-29.fc41 openbabel-devel(x86-64) = 3.1.1-29.fc41 pkgconfig(openbabel-3) = 3.1.1 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/pkg-config cmake-filesystem(x86-64) libopenbabel.so.7()(64bit) Processing files: openbabel-doc-3.1.1-29.fc41.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.tNHzmr + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + cd openbabel-openbabel-3-1-1 + DOCDIR=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/FAQ.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/OBTwoMigration.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/OpenBabelGUI.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/api-footer.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/api-header.html /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/README.dioxin.pov /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/README.povray /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/dioxin.inc /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/dioxin.mol2 /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/dioxin.png /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/doc/dioxin.pov /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: openbabel-doc = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: openbabel-gui-3.1.1-29.fc41.x86_64 Provides: application() application(obgui.desktop) openbabel-gui = 3.1.1-29.fc41 openbabel-gui(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libopenbabel.so.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libwx_baseu-3.2.so.0()(64bit) libwx_baseu-3.2.so.0(WXU_3.2)(64bit) libwx_gtk3u_core-3.2.so.0()(64bit) libwx_gtk3u_core-3.2.so.0(WXU_3.2)(64bit) rtld(GNU_HASH) Processing files: openbabel-libs-3.1.1-29.fc41.x86_64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.NTP7Lw + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + cd openbabel-openbabel-3-1-1 + DOCDIR=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/THANKS /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/AUTHORS /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/authors.txt /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/README.md /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/doc/openbabel-libs + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.S6PUVB + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + cd openbabel-openbabel-3-1-1 + LICENSEDIR=/builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/licenses/openbabel-libs + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/licenses/openbabel-libs + cp -pr /builddir/build/BUILD/openbabel-3.1.1-build/openbabel-openbabel-3-1-1/COPYING /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT/usr/share/licenses/openbabel-libs + RPM_EC=0 ++ jobs -p + exit 0 Provides: libopenbabel.so.7()(64bit) openbabel-libs = 3.1.1-29.fc41 openbabel-libs(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libcairo.so.2()(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libinchi.so.1()(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.38)(64bit) libopenbabel.so.7()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.1)(64bit) libstdc++.so.6(CXXABI_1.3.7)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.10)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.26)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.5)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libxml2.so.2()(64bit) libxml2.so.2(LIBXML2_2.4.30)(64bit) libxml2.so.2(LIBXML2_2.5.0)(64bit) libxml2.so.2(LIBXML2_2.6.0)(64bit) libxml2.so.2(LIBXML2_2.6.5)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: perl-openbabel-3.1.1-29.fc41.x86_64 Provides: perl(Chemistry::OpenBabel) perl(Chemistry::OpenBabel::AliasData) perl(Chemistry::OpenBabel::CharPtrLess) perl(Chemistry::OpenBabel::Dummy) perl(Chemistry::OpenBabel::LineSearchType) perl(Chemistry::OpenBabel::OBAngle) perl(Chemistry::OpenBabel::OBAngleData) perl(Chemistry::OpenBabel::OBAtom) perl(Chemistry::OpenBabel::OBAtomAtomIter) perl(Chemistry::OpenBabel::OBAtomBondIter) perl(Chemistry::OpenBabel::OBAtomHOF) perl(Chemistry::OpenBabel::OBAtomicHeatOfFormationTable) perl(Chemistry::OpenBabel::OBBase) perl(Chemistry::OpenBabel::OBBitVec) perl(Chemistry::OpenBabel::OBBond) perl(Chemistry::OpenBabel::OBBuilder) perl(Chemistry::OpenBabel::OBCommentData) perl(Chemistry::OpenBabel::OBConformerData) perl(Chemistry::OpenBabel::OBConversion) perl(Chemistry::OpenBabel::OBDOSData) perl(Chemistry::OpenBabel::OBDescriptor) perl(Chemistry::OpenBabel::OBElectronicTransitionData) perl(Chemistry::OpenBabel::OBError) perl(Chemistry::OpenBabel::OBExternalBond) perl(Chemistry::OpenBabel::OBExternalBondData) perl(Chemistry::OpenBabel::OBFFCalculation2) perl(Chemistry::OpenBabel::OBFFCalculation3) perl(Chemistry::OpenBabel::OBFFCalculation4) perl(Chemistry::OpenBabel::OBFFConstraint) perl(Chemistry::OpenBabel::OBFFConstraints) perl(Chemistry::OpenBabel::OBFFParameter) perl(Chemistry::OpenBabel::OBFingerprintIter) perl(Chemistry::OpenBabel::OBForceField) perl(Chemistry::OpenBabel::OBFormat) perl(Chemistry::OpenBabel::OBFreeGrid) perl(Chemistry::OpenBabel::OBFreeGridPoint) perl(Chemistry::OpenBabel::OBGenericData) perl(Chemistry::OpenBabel::OBGlobalDataBase) perl(Chemistry::OpenBabel::OBGridData) perl(Chemistry::OpenBabel::OBInternalCoord) perl(Chemistry::OpenBabel::OBMatrixData) perl(Chemistry::OpenBabel::OBMessageHandler) perl(Chemistry::OpenBabel::OBMol) perl(Chemistry::OpenBabel::OBMolAngleIter) perl(Chemistry::OpenBabel::OBMolAtomBFSIter) perl(Chemistry::OpenBabel::OBMolAtomDFSIter) perl(Chemistry::OpenBabel::OBMolAtomIter) perl(Chemistry::OpenBabel::OBMolBondBFSIter) perl(Chemistry::OpenBabel::OBMolBondIter) perl(Chemistry::OpenBabel::OBMolPairIter) perl(Chemistry::OpenBabel::OBMolRingIter) perl(Chemistry::OpenBabel::OBMolTorsionIter) perl(Chemistry::OpenBabel::OBOp) perl(Chemistry::OpenBabel::OBOrbital) perl(Chemistry::OpenBabel::OBOrbitalData) perl(Chemistry::OpenBabel::OBPairData) perl(Chemistry::OpenBabel::OBPcharge) perl(Chemistry::OpenBabel::OBPlugin) perl(Chemistry::OpenBabel::OBRTree) perl(Chemistry::OpenBabel::OBResidue) perl(Chemistry::OpenBabel::OBResidueAtomIter) perl(Chemistry::OpenBabel::OBResidueData) perl(Chemistry::OpenBabel::OBResidueIter) perl(Chemistry::OpenBabel::OBRing) perl(Chemistry::OpenBabel::OBRingData) perl(Chemistry::OpenBabel::OBRingSearch) perl(Chemistry::OpenBabel::OBRotamerList) perl(Chemistry::OpenBabel::OBRotationData) perl(Chemistry::OpenBabel::OBRotor) perl(Chemistry::OpenBabel::OBRotorKeys) perl(Chemistry::OpenBabel::OBRotorList) perl(Chemistry::OpenBabel::OBRotorRule) perl(Chemistry::OpenBabel::OBRotorRules) perl(Chemistry::OpenBabel::OBSSMatch) perl(Chemistry::OpenBabel::OBSerialNums) perl(Chemistry::OpenBabel::OBSetData) perl(Chemistry::OpenBabel::OBSmartsMatcher) perl(Chemistry::OpenBabel::OBSmartsPattern) perl(Chemistry::OpenBabel::OBSqrtTbl) perl(Chemistry::OpenBabel::OBStopwatch) perl(Chemistry::OpenBabel::OBSymmetryData) perl(Chemistry::OpenBabel::OBTorsion) perl(Chemistry::OpenBabel::OBTorsionData) perl(Chemistry::OpenBabel::OBTypeTable) perl(Chemistry::OpenBabel::OBUnitCell) perl(Chemistry::OpenBabel::OBVectorData) perl(Chemistry::OpenBabel::OBVibrationData) perl(Chemistry::OpenBabel::OBVirtualBond) perl(Chemistry::OpenBabel::VectorDouble) perl(Chemistry::OpenBabel::VectorInt) perl(Chemistry::OpenBabel::VectorOBBond) perl(Chemistry::OpenBabel::VectorOBMol) perl(Chemistry::OpenBabel::VectorOBResidue) perl(Chemistry::OpenBabel::VectorOBRing) perl(Chemistry::OpenBabel::VectorString) perl(Chemistry::OpenBabel::VectorUnsignedInt) perl(Chemistry::OpenBabel::VectorVInt) perl(Chemistry::OpenBabel::VectorVector3) perl(Chemistry::OpenBabel::VectorpOBGenericData) perl(Chemistry::OpenBabel::VectorpOBRing) perl(Chemistry::OpenBabel::_OBAtomAtomIter) perl(Chemistry::OpenBabel::_OBAtomBondIter) perl(Chemistry::OpenBabel::_OBMolAngleIter) perl(Chemistry::OpenBabel::_OBMolAtomBFSIter) perl(Chemistry::OpenBabel::_OBMolAtomDFSIter) perl(Chemistry::OpenBabel::_OBMolAtomIter) perl(Chemistry::OpenBabel::_OBMolBondIter) perl(Chemistry::OpenBabel::_OBMolPairIter) perl(Chemistry::OpenBabel::_OBMolRingIter) perl(Chemistry::OpenBabel::_OBMolTorsionIter) perl(Chemistry::OpenBabel::_OBResidueAtomIter) perl(Chemistry::OpenBabel::matrix3x3) perl(Chemistry::OpenBabel::obLogBuf) perl(Chemistry::OpenBabel::rotor_digit) perl(Chemistry::OpenBabel::stringbuf) perl(Chemistry::OpenBabel::vector3) perl(Chemistry::OpenBabelc) perl-openbabel = 3.1.1-29.fc41 perl-openbabel(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libopenbabel.so.7()(64bit) libperl.so.5.40()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) perl(:MODULE_COMPAT_5.40.1) perl(DynaLoader) perl(Exporter) perl(base) perl(overload) perl(vars) perl-libs rtld(GNU_HASH) Processing files: python3-openbabel-3.1.1-29.fc41.x86_64 Provides: python-openbabel = 3.1.1-29.fc41 python3-openbabel = 3.1.1-29.fc41 python3-openbabel(x86-64) = 3.1.1-29.fc41 python3.13-openbabel = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-x86-64.so.2()(64bit) ld-linux-x86-64.so.2(GLIBC_2.3)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libopenbabel.so.7()(64bit) libpython3.13.so.1.0()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) python(abi) = 3.13 rtld(GNU_HASH) Obsoletes: python-openbabel < 3.1.1-29.fc41 python2-openbabel < 0:3.1.1-29.fc41 Processing files: ruby-openbabel-3.1.1-29.fc41.x86_64 Provides: ruby-openbabel = 3.1.1-29.fc41 ruby-openbabel(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: libc.so.6()(64bit) libc.so.6(GLIBC_2.14)(64bit) libc.so.6(GLIBC_2.2.5)(64bit) libc.so.6(GLIBC_2.3.4)(64bit) libc.so.6(GLIBC_2.4)(64bit) libc.so.6(GLIBC_ABI_DT_RELR)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.2.5)(64bit) libopenbabel.so.7()(64bit) libruby.so.3.3()(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.29)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH) Processing files: openbabel-debugsource-3.1.1-29.fc41.x86_64 Provides: openbabel-debugsource = 3.1.1-29.fc41 openbabel-debugsource(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: openbabel-debuginfo-3.1.1-29.fc41.x86_64 Provides: debuginfo(build-id) = 0f8878ee51b76f7091a66f67090371c33d60c140 debuginfo(build-id) = 15f21a389963ff3b33d6f64f2991482d1e3850be debuginfo(build-id) = 18edf2e61dd6107169bc0dc8f149a6613167102d debuginfo(build-id) = 23b75f9af32d532b75b56ff5c5c7f5927a863ed4 debuginfo(build-id) = 2d70794e1d6fb898eb6cf0b1ea5a02ad18dea1b6 debuginfo(build-id) = 519b5697d14a40be337f13d8320d7483c204ae98 debuginfo(build-id) = 55f053d756f6b651faf477b4de2e85add413628f debuginfo(build-id) = 6fd16a65beb75130f6607d6487718b6ccc8fdcab debuginfo(build-id) = 88215ba3812c0716329f69f2b4568fcaa08e4cbe debuginfo(build-id) = 8fa8e47f81ff8122b45a85fab807ad21ef65d7d1 debuginfo(build-id) = 9ae1ac57739cb50183bbd52c9d8186129b29bc72 debuginfo(build-id) = a3c5dd5752c4bcd5416cdddf4a8f51e920240baf debuginfo(build-id) = ac1026b93918b4ca2f086b750aec4040470abfb8 debuginfo(build-id) = af97e1cbb4cf561f6a5fc4e18e7baeaf5325bd80 debuginfo(build-id) = b11b018e4ae0b9b2d6161b791a64433bc2bdb0e6 debuginfo(build-id) = b90195994d12725bb2ad581c394d6dabde957489 debuginfo(build-id) = bf17a31c26099c5a86111235f8af4ce0967178fb debuginfo(build-id) = c1a56e716f968ca9e5b00f73dfe1a7a08b0e925d debuginfo(build-id) = c1dbf1834a8e00051f2ecd3d2056a00e0265a94d debuginfo(build-id) = ca78daceb67f4d0e9d16d34504d9ea73600d71cc debuginfo(build-id) = e95474fd154b5569e7f00258497e7a3eef566f04 openbabel-debuginfo = 3.1.1-29.fc41 openbabel-debuginfo(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(x86-64) = 3.1.1-29.fc41 Processing files: openbabel-gui-debuginfo-3.1.1-29.fc41.x86_64 Provides: debuginfo(build-id) = 23b75f9af32d532b75b56ff5c5c7f5927a863ed4 openbabel-gui-debuginfo = 3.1.1-29.fc41 openbabel-gui-debuginfo(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(x86-64) = 3.1.1-29.fc41 Processing files: openbabel-libs-debuginfo-3.1.1-29.fc41.x86_64 Provides: debuginfo(build-id) = 00f9be4516be5032080cb8a03f2969052ba5f50f debuginfo(build-id) = 021bc9a56b417dc46210c6d966f78bb5385a9240 debuginfo(build-id) = 02ea3e4a045409e0ea04f7f9c432e659ea5a9437 debuginfo(build-id) = 043b0a4f34ece287d972124729e3c72960c7ca66 debuginfo(build-id) = 04f9b25089b02d630249042b28906b656d5dd680 debuginfo(build-id) = 072dda1c896d3037fb935c724a60c47dc427b102 debuginfo(build-id) = 08cf0239090c10364eb96637637c13bce7220649 debuginfo(build-id) = 0a24ad479134e894046c5c09e094104d22bccf3c debuginfo(build-id) = 0b345d761a18ec3f5ceef6e4d27b71ec10f3ce09 debuginfo(build-id) = 0b78c1e966fb4ce8a09ae769045e2436706c65c3 debuginfo(build-id) = 0caabc5bae86c62da2d16145f825a679dbb38efd debuginfo(build-id) = 0e2b9406197ec32a7482e81186c76b0a8f9910a5 debuginfo(build-id) = 1162b61ce11d4b604cd26fb5e1a22e1e723f6286 debuginfo(build-id) = 1542ce0b71f89306c85f2e1df6693710585beca0 debuginfo(build-id) = 18c1519cd8366bb2a431acde98e564fe762296c0 debuginfo(build-id) = 1b7e2a02ce81288cda33dd5e43996926e948fb6a debuginfo(build-id) = 1c298dc4225e23f2d6b851253bf670715a677389 debuginfo(build-id) = 1d116af4d85acb64b5b6e30ad963a8a5c6e9fb0a debuginfo(build-id) = 1e902adfe1c00b930874247790c833668828c953 debuginfo(build-id) = 21577a3f70b367346d612489f2201037ee643d29 debuginfo(build-id) = 2356c589ba31a4ac18350760c213ada08eeb4bd5 debuginfo(build-id) = 23aee7c57f87d014b2f6a8c907af59429c22db8f debuginfo(build-id) = 25f7c8d4220bda63a9c8618b2e24e1d5ed75470b debuginfo(build-id) = 2a3389abd649b3cee5086056359e3805d1d1952f debuginfo(build-id) = 2a34d1c40a940411e85bcbd03a2eab590c358fe9 debuginfo(build-id) = 2ae3424b72e95c62ecd49b2fa3ed0295574bbf05 debuginfo(build-id) = 2dc0b110e83ee9dd1811023979e84ea17987bf49 debuginfo(build-id) = 2e465553c22496189aed019fa7ed8cd8e0e630bf debuginfo(build-id) = 301a9f5533e500788f3e24faabd45824eda141f8 debuginfo(build-id) = 32aba31c0da89923dc4bb0ffa2dac35cb70870be debuginfo(build-id) = 34bbe8e76f70f9e73d2f01e4d628658da4c5fcba debuginfo(build-id) = 390e88b53232c7aba766058be7a614d510e9eb8d debuginfo(build-id) = 3cd6ad0d7e447a62ef0b7b56a59ce387e9e64e32 debuginfo(build-id) = 3dbb073e4cf0998938b5f39aa609e6cfa78b3d37 debuginfo(build-id) = 3dd0c954cff4bf6ea9cd683dba5a840f73ac1592 debuginfo(build-id) = 43153e64e901fbf577f4a7f0b4d75ab17175c2d2 debuginfo(build-id) = 43281c4b1040a1ba47eaea04e63397e68e006689 debuginfo(build-id) = 4d4be141e92496a5a29173b0b2fcf67651547b9e debuginfo(build-id) = 4fb30335440841466dd01c47945dbc81097f4647 debuginfo(build-id) = 524745ae2868a6c3721156e8c63a1d4a224ab534 debuginfo(build-id) = 53a1eaadbe971f915e48ee586d9f24e103f85b57 debuginfo(build-id) = 580b84cea4ad492d93145f7d7f5b47348246aaf7 debuginfo(build-id) = 590d2f9cd5ce3f1aaba8b56a6149c712834b593c debuginfo(build-id) = 5ad70e7fa22bdcf4b4d8769a73194abd01b5dd60 debuginfo(build-id) = 5cfea53592e8394db77428d8f231db524dccc128 debuginfo(build-id) = 5daa81f70b76b7de115cbc2831c4aabb25267117 debuginfo(build-id) = 61d948d91b71f26e0f4df4fe510a3e19f3bc2622 debuginfo(build-id) = 64c7ec7803c57aa28d071a462153c6fff70190ae debuginfo(build-id) = 685c01cfdd3fa281f250c5ffd8145ca786467702 debuginfo(build-id) = 6a1f6f82540bdde5e432a0d1e574eaac20efa0b1 debuginfo(build-id) = 6bab37a567b21b7221ab1e1c4e6976491b4fe64a debuginfo(build-id) = 6c18e839519b8ae637fc61275e4d42d435f35e32 debuginfo(build-id) = 709427df87d3ddbd5467198eebcb99d28666829b debuginfo(build-id) = 713a4c7b66a6666b4deae5f8a2593c2d376338e5 debuginfo(build-id) = 7503d966d181cc4483293644a57b451f256c5bc8 debuginfo(build-id) = 770f85499740d2a78fbe581b35be2847729926e6 debuginfo(build-id) = 7c467536d20c436a7010677ff39d50a1b19e2465 debuginfo(build-id) = 7ff3f5b74be01e7264b6113e6f61524f00f3e078 debuginfo(build-id) = 81a2d7f844afc6ee23ad9afe15124b72275e258c debuginfo(build-id) = 826036638a2303f8bcf7ea1808a00fa4be0233c2 debuginfo(build-id) = 83638aa71c3f9320ecd15dc0491a3e6dee73e64f debuginfo(build-id) = 837f6a1326db1a8a04899e0e5351ecc1fdddaa1c debuginfo(build-id) = 87ac6c5c4a87df29405f756d7fa3e22dd895c224 debuginfo(build-id) = 8a82289eb7350432ec0b2c202bbfff67e6bc381e debuginfo(build-id) = 8d3c02405ecf68bd66ee633a0a8108e92627b11e debuginfo(build-id) = 8d7929fe8163f23f0b2bd94701320a979afb720c debuginfo(build-id) = 8f53a12cbf3d75d8f8139d646ce1d81357501c46 debuginfo(build-id) = 91f41beebe8d67962955f6123bf12c6601dbb326 debuginfo(build-id) = 9367d697bacd65632e79038247ed20d048232744 debuginfo(build-id) = 93903b080e5a807ccf00ca21d7b18641e0a24acf debuginfo(build-id) = 94b6b97b93655a2d09121b1a559f46c9d8673d61 debuginfo(build-id) = 94dbe60df4c775355ed1bd63a6c95d5e6b1389a4 debuginfo(build-id) = 951d347cda996b24f1e876f3c62211ef46ee2fc3 debuginfo(build-id) = 955f409ec0cde0fd49b4be949b3bbeb23fd01d20 debuginfo(build-id) = 97eeb8ed6e2028887809a2ebb5ae344df4d9daaa debuginfo(build-id) = 9b2e09680d3ae77229c4741e0fc85043c270a4ba debuginfo(build-id) = 9b59b49892e7c2372aec8fd942e0cc3cdb1e2bc3 debuginfo(build-id) = 9b5e7e0857363248b4668ee361a542187a956bdf debuginfo(build-id) = 9b6a6b1ad57d11883fd6fdae637a0ba55d6aea21 debuginfo(build-id) = 9c13f3f184c758fbbcae1c154fcc63aef731e6d4 debuginfo(build-id) = 9cc3222321495b1326217169fcb98f9da83c4436 debuginfo(build-id) = aa316278dad4af230b83d0da73ce954047f38f25 debuginfo(build-id) = aae35b6364bee6b1705dc3767417173e76fa2977 debuginfo(build-id) = ab600849acd5c627ad300f22aedb9e449fb16892 debuginfo(build-id) = acaab28ab1894e98a09272a3565850b97db976b9 debuginfo(build-id) = b117d0a214bf91269e1e0e463e25bc755487927b debuginfo(build-id) = b43ca1c7ae564924e22eaf2dc2b6cc92559cebab debuginfo(build-id) = b4cc9da7f6f57ea806fa8db9dedfa690cbce83bb debuginfo(build-id) = b79e67fc51751ab6506456cc02acfc6e4d46e982 debuginfo(build-id) = ba1136ba1ce3a828076fff452d30493af63f5396 debuginfo(build-id) = bdbb4a7064f919520dee62287691dacf8b32bce6 debuginfo(build-id) = bf3e5f6e442d2e0bfd6023411272ae3f38b8417a debuginfo(build-id) = bf6476940806ef024889e8f8c28a899a0ec767c1 debuginfo(build-id) = c3de2eec12a76cf2f30cca444811c57c7ef39af4 debuginfo(build-id) = c4ba668adac338620f7b3a73c34bd5f20318ea04 debuginfo(build-id) = c917d8ded5035e271a2abea688d4ac57e86123a0 debuginfo(build-id) = ca3ecd35a4b4597992be50664f7fc8b8db88a380 debuginfo(build-id) = ce81de94c3723a0af2441058bc9e75b1c25682d9 debuginfo(build-id) = d00ffb20a3062d2d9019e0eeffb7cba8cd9c2e20 debuginfo(build-id) = d35bc0122c5b9839f98134936ad654a9a24f8a9b debuginfo(build-id) = d396d4ec05a1312b5cbe9a6d5e7eb4d1e1bd9af7 debuginfo(build-id) = d5d7c56d5eb9a8103e65faf9fe9f5c687fa9ef36 debuginfo(build-id) = d774e8b3838a84bcd5cdb899a74587b32b161761 debuginfo(build-id) = d8a6464ea34a88577a773c3a30a7a51d4b47cef1 debuginfo(build-id) = dc18487d9660204bbc1980a92bd3355da3753e04 debuginfo(build-id) = dd081f9993b78c0155f601d9e7401f685c4cbfc1 debuginfo(build-id) = ddcabd76aa1cd388ccc0fb7c26aa2a259f272590 debuginfo(build-id) = de24a01a5ec9e5bb331cab4ece7e0de215ec4c09 debuginfo(build-id) = df824f74e0843299aef96fccf9760d0f5992d57f debuginfo(build-id) = e31c7726baf5dad194ffad0f0ed8c425f1c92ef0 debuginfo(build-id) = e334fdfdb8b378616d9d32bbbee3c030b8a55114 debuginfo(build-id) = e4f486ddfff1f21983e32c50b8690e84b6b54599 debuginfo(build-id) = e54f6fd96518ea0d3993e4e9edf4c85c010479f9 debuginfo(build-id) = e559b5549660dbfc4df6f230caed420378c4c4ed debuginfo(build-id) = e5aad82ffedf49b617873d50c091858f6b5601b8 debuginfo(build-id) = e8b707e45c2911778403835c6352eb27bf6e2eac debuginfo(build-id) = eb7e999d5a4e2f7102935d3cad93b86805bf4488 debuginfo(build-id) = ed365e14cc62e77e040ea692a6735a0c79eb9e1e debuginfo(build-id) = f01976080fa25fea7b7d78fd8b95aa6690d9efd9 debuginfo(build-id) = f3d7757717d042fe0dd7f1ac57135094c99d0627 debuginfo(build-id) = f70e632a15955cc4bd996a92e73e6d38fd16586e debuginfo(build-id) = f8661f50a750c9e84ead5ec409423c25b9e095d5 debuginfo(build-id) = f9cc8f521b8dafdf8eacf04f4ba08186d57def6a debuginfo(build-id) = fa341b90667c6a20b9146bf7ec28233c76ff2bb5 debuginfo(build-id) = fea466ec0f4f92918cffef7e436c0bffb23a8836 debuginfo(build-id) = ffbbd42d24baf33e1618d0e1371abcb9150d7db0 debuginfo(build-id) = ffbc27ebf97eb24428c2bd383c56a858e6d77c23 libopenbabel.so.7.0.0-3.1.1-29.fc41.x86_64.debug()(64bit) openbabel-libs-debuginfo = 3.1.1-29.fc41 openbabel-libs-debuginfo(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(x86-64) = 3.1.1-29.fc41 Processing files: perl-openbabel-debuginfo-3.1.1-29.fc41.x86_64 Provides: debuginfo(build-id) = 6242b1b03d779bedd3132982e333c590e9dcb180 perl-openbabel-debuginfo = 3.1.1-29.fc41 perl-openbabel-debuginfo(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(x86-64) = 3.1.1-29.fc41 Processing files: python3-openbabel-debuginfo-3.1.1-29.fc41.x86_64 Provides: debuginfo(build-id) = 628fe979b3cf3c73391ce60ac5311dac8d329bd7 python-openbabel-debuginfo = 3.1.1-29.fc41 python3-openbabel-debuginfo = 3.1.1-29.fc41 python3-openbabel-debuginfo(x86-64) = 3.1.1-29.fc41 python3.13-openbabel-debuginfo = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(x86-64) = 3.1.1-29.fc41 Processing files: ruby-openbabel-debuginfo-3.1.1-29.fc41.x86_64 Provides: debuginfo(build-id) = d7160dc4bcae8d34823cc7bf7bb954e3f2d6e09b ruby-openbabel-debuginfo = 3.1.1-29.fc41 ruby-openbabel-debuginfo(x86-64) = 3.1.1-29.fc41 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: openbabel-debugsource(x86-64) = 3.1.1-29.fc41 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/openbabel-3.1.1-build/BUILDROOT Wrote: /builddir/build/RPMS/openbabel-debugsource-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/openbabel-libs-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/python3-openbabel-debuginfo-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/ruby-openbabel-debuginfo-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/perl-openbabel-debuginfo-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/perl-openbabel-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/openbabel-debuginfo-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/python3-openbabel-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/ruby-openbabel-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/openbabel-gui-debuginfo-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/openbabel-devel-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/openbabel-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/openbabel-gui-3.1.1-29.fc41.x86_64.rpm Wrote: /builddir/build/RPMS/openbabel-doc-3.1.1-29.fc41.noarch.rpm Wrote: /builddir/build/RPMS/openbabel-libs-debuginfo-3.1.1-29.fc41.x86_64.rpm Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.Wd4pUe + umask 022 + cd /builddir/build/BUILD/openbabel-3.1.1-build + test -d /builddir/build/BUILD/openbabel-3.1.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/openbabel-3.1.1-build + rm -rf /builddir/build/BUILD/openbabel-3.1.1-build + RPM_EC=0 ++ jobs -p + exit 0 RPM build warnings: File listed twice: /usr/lib/.build-id/23/b75f9af32d532b75b56ff5c5c7f5927a863ed4 Finish: rpmbuild openbabel-3.1.1-29.fc41.src.rpm Finish: build phase for openbabel-3.1.1-29.fc41.src.rpm INFO: chroot_scan: 1 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-41-x86_64-1739594052.998728/root/var/log/dnf5.log INFO: chroot_scan: creating tarball /var/lib/copr-rpmbuild/results/chroot_scan.tar.gz /bin/tar: Removing leading `/' from member names INFO: Done(/var/lib/copr-rpmbuild/results/openbabel-3.1.1-29.fc41.src.rpm) Config(child) 12 minutes 47 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool Package info: { "packages": [ { "name": "openbabel-gui", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "ruby-openbabel-debuginfo", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "python3-openbabel-debuginfo", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "openbabel-gui-debuginfo", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "ruby-openbabel", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "openbabel-doc", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "noarch" }, { "name": "openbabel-libs", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "python3-openbabel", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "openbabel-libs-debuginfo", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "openbabel-debuginfo", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "openbabel", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "src" }, { "name": "perl-openbabel-debuginfo", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "perl-openbabel", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "openbabel-devel", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "openbabel", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" }, { "name": "openbabel-debugsource", "epoch": null, "version": "3.1.1", "release": "29.fc41", "arch": "x86_64" } ] } RPMResults finished